View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21266_low_8 (Length: 522)
Name: NF21266_low_8
Description: NF21266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21266_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 482; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Complemental strand, 35665458 - 35664948
Alignment:
| Q |
1 |
gaaacttgaaaacataatccttgccacccattatcagtaatgctggaactttgactacaggatccggtaagttaaagtcttcaccaaacgacctacaaat |
100 |
Q |
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| T |
35665458 |
gaaacttgaaaacataatccttgccacccattatcagtaatgctggaactttgactacaggatccggcaagttaaagtcttcaccaaacgacctacaaat |
35665359 |
T |
|
| Q |
101 |
gcaaacaaaacaatcactaataagaattcacatcagaaaaattgaaaggtggagggatcatgcttcactggcnnnnnnntatgggaacaaaagaaaaatg |
200 |
Q |
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| T |
35665358 |
gcaaacaaaacaatcactaataagaattcacatcagaaaaattgaaaggtggagggatcatgcttcactggcaaaaaaatatgggaacaaaagaaaaatg |
35665259 |
T |
|
| Q |
201 |
gcagcacctgtatggaacctgcaatgcagtttggaatccagatttttcatacaaagctccatatgctgcaagatcctcttcagagaaccaagatggaaga |
300 |
Q |
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| T |
35665258 |
gcagcacctgtatggaacctgcaatgcagtttggaatccagatttttcatacaaagctccatatgctgcaagatcctcttcagagaaccaagatggaaga |
35665159 |
T |
|
| Q |
301 |
ggagtaccaggttccaccaaatccatgatttcctggttttcatcagctattggtacttcactttttgagaaaaggatgtaaacgtttcgcacgacagtct |
400 |
Q |
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| T |
35665158 |
ggagtaccaggttccaccaaatccatgatttcctggttttcatcagctattggtacttcactttttgagaaaaggatgtaaacgtttcgcacgacagtct |
35665059 |
T |
|
| Q |
401 |
tggcatcaaaacgtccaaaatcagcctctgcccttcctggtttctgatatgtacatacatatagacaaaaacaaagttgtttgttagtaattataatgat |
500 |
Q |
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| T |
35665058 |
tggcatcaaaacgtccaaaatcagcctctgcccttcctggtttctgatatgtacatacatatagacaaaaacaaagttgtttgttagtaattataatgat |
35664959 |
T |
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| Q |
501 |
tatattcttgg |
511 |
Q |
| |
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|||||| |||| |
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| T |
35664958 |
tatattattgg |
35664948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 204 - 476
Target Start/End: Complemental strand, 35681240 - 35680969
Alignment:
| Q |
204 |
gcacctgtatggaacctgcaatgcagtttggaatccagatttttcatacaaagctccatatgctgcaagatcctcttcagagaaccaagatggaagagga |
303 |
Q |
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|||||| ||||||||||||||||| ||| ||||||||||||| |||||||| || ||||| | || |||||| || |||| |||||||| |||||||| |
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| T |
35681240 |
gcacctatatggaacctgcaatgcggttcggaatccagatttctcatacaaggccccataagttgaaagatcatcctcagtaaaccaagagggaagaggg |
35681141 |
T |
|
| Q |
304 |
gtaccaggttccaccaaatccatgatttcctggttttcatcagctattggtacttcactttttgagaaaaggatgtaaacgtttcgcacgacagtcttgg |
403 |
Q |
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| T |
35681140 |
gtatcaggttccactaaatccatgatctcttggttttcattagctattggtaattcacttcttgagaaaaggatataaacttttcgcacaacagtttttg |
35681041 |
T |
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| Q |
404 |
catcaaaacgtccaaaatcagcctctgcccttcctggtttctgatatgtacatacatatagacaaaaacaaag |
476 |
Q |
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| T |
35681040 |
catcaaagcgtccaaaatcagcctctgctcttcctggttcctgatacata-atacatataaacaaatacaaag |
35680969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 35681485 - 35681407
Alignment:
| Q |
1 |
gaaacttgaaaacataatccttgccacccattatcagtaatgctggaactttgactacaggatccggtaagttaaagtc |
79 |
Q |
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|||||||||||||||||||||| |||||||||||||| | || ||||||||||||||||||||| || ||||| ||||| |
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| T |
35681485 |
gaaacttgaaaacataatcctttccacccattatcagcagtgttggaactttgactacaggatctggcaagttcaagtc |
35681407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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