View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21266_low_9 (Length: 509)
Name: NF21266_low_9
Description: NF21266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21266_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Complemental strand, 2434620 - 2434238
Alignment:
| Q |
18 |
catgacatacagaaccaggggtgagagcaccaagtcctgcagtagtgtccttggtcatcaggagtctcatgtaaggatcacaagacaagtacagattttt |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2434620 |
catgacatacagaaccaggggtgagagcaccaagtcctgcagtagtgtccttggtcatcaggagtctcatgtaaggatcacaagacaagtacagattttt |
2434521 |
T |
|
| Q |
118 |
gagcaaaacaacatcattggaaccttgtggaagcttgagtgttatggtactgtcaacaatgttgaggtctgattctttaggaaaaccagacacatagtcc |
217 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2434520 |
gagcaaaaccacatcattggaaccttgtggaagcttgagtgttatggtactgtcaacaatgttgaggtctgattctttaggaaaaccagacacatagtcc |
2434421 |
T |
|
| Q |
218 |
ttcagaatcacttgcttgttcctcacttccgccatctcacgaattgtgtcacaaaaatctttgtggtgtttgtgttgtacatgtacgtctaatacaactg |
317 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||| ||||| |
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| T |
2434420 |
ttcagaatcacttgcttgttcctcacttccgccatctcaggaattgtgtcactaaaatctttgtggtgtttgtgttgtacat---------atagaactg |
2434330 |
T |
|
| Q |
318 |
gccacacattggtttgtacatttatctaacgtatttgtatgaaacaaattgccaaaattgttcgtttaatttaatttcaagtaaggatttag |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2434329 |
gccacacattggtttgtacatttatctaacgtatttgtatgaaacaaattgccaaaattgttcgtttaatttaatttcaagtaacgatttag |
2434238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 347
Target Start/End: Complemental strand, 2431040 - 2430712
Alignment:
| Q |
18 |
catgacatacagaaccaggggtgagagcaccaagtcctgcagtagtgtccttggtcatcaggagtctcatgtaaggatcacaagacaagtacagattttt |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
2431040 |
catgacatacaaaaccaggggtgagagcaccaagttctgcagtagtgtctttggtcatgcggattctcatgtaaggatcacaagacaagtacagattttt |
2430941 |
T |
|
| Q |
118 |
gagcaaaacaacatcattggaaccttgtggaagcttgagtgttatggtactgtcaacaatgttgaggtctgattctttaggaaaaccagacacatagtcc |
217 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||| ||||| |||||||| ||||| || | |||||||||||||||||||||||||||||||||| |
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| T |
2430940 |
tagcagaacaacatcatttgaaccttgtggaagcttgagagttatagtactgtctacaatattcatgtctgattctttaggaaaaccagacacatagtcc |
2430841 |
T |
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| Q |
218 |
ttcagaatcacttgcttgttcctcacttccgccatctcacgaattgtgtcacaaaaatctttgtggtgtttgtgttgtacatgt--acgtctaatacaac |
315 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
2430840 |
ttcagaatcacttgcttgttcctcatttccgccatctcaggaattgtgttgcaaaaatctttgtggtgtttgtgttgtacatgtacacatctaatacaac |
2430741 |
T |
|
| Q |
316 |
tggccacacattggtttgtacatttatctaac |
347 |
Q |
| |
|
|||||||| |||| |||||||| ||||||| |
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|
| T |
2430740 |
tggccaca---tggtctgtacattcatctaac |
2430712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 2427786 - 2427552
Alignment:
| Q |
18 |
catgacatacagaaccaggggtgagagcaccaagtcctgcagtagtgtccttggtcatcaggagtctcatgtaaggatcacaagacaagtacagattttt |
117 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||| | | ||||| |||||||||||| || ||||| |||||||| |
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|
| T |
2427786 |
catgacatacagaaccaggggtgagaccaccaagtcctgcaatagtgtccttggccatgaaaattctcaggtaaggatcacaggataagtagagattttt |
2427687 |
T |
|
| Q |
118 |
gagcaaaacaacatcattggaaccttgtggaagcttgagtgttatggtactgtcaacaatgttgaggtctgattctttaggaaaaccagacacatagtcc |
217 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||| | || ||||| ||||||| || | ||||||||| ||||||||||||||||||||||| |
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|
| T |
2427686 |
gagcagaacaacatcattggaaccttgtggaaggttgagaataattgtactatcaacaacattcatgtctgattccttaggaaaaccagacacatagtct |
2427587 |
T |
|
| Q |
218 |
ttcagaatcacttgcttgttcctcacttccgccat |
252 |
Q |
| |
|
||| ||||||||||||||| ||||||| |||||| |
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|
| T |
2427586 |
ctcaaaatcacttgcttgtttctcacttgcgccat |
2427552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 1458079 - 1457845
Alignment:
| Q |
18 |
catgacatacagaaccaggggtgagagcaccaagtcctgcagtagtgtccttggtcatcaggagtctcatgtaaggatcacaagacaagtacagattttt |
117 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||| | | ||||| |||||||||||| || ||||| |||||||| |
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|
| T |
1458079 |
catgacatacagaaccaggggtgagaccaccaagtcctgcaatagtgtccttggccatgaaaattctcaggtaaggatcacaggataagtagagattttt |
1457980 |
T |
|
| Q |
118 |
gagcaaaacaacatcattggaaccttgtggaagcttgagtgttatggtactgtcaacaatgttgaggtctgattctttaggaaaaccagacacatagtcc |
217 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||| | || ||||| ||||||| || | ||||||||| ||||||||||||||||||||||| |
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|
| T |
1457979 |
tagcagaacaacatcattggaaccttgtggaaggttgagaataattgtactatcaacaacattcatgtctgattccttaggaaaaccagacacatagtct |
1457880 |
T |
|
| Q |
218 |
ttcagaatcacttgcttgttcctcacttccgccat |
252 |
Q |
| |
|
||| ||||||||||||||| ||||||| |||||| |
|
|
| T |
1457879 |
ctcaaaatcacttgcttgtttctcacttgcgccat |
1457845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 83 - 238
Target Start/End: Original strand, 2519215 - 2519370
Alignment:
| Q |
83 |
ctcatgtaaggatcacaagacaagtacagatttttgagcaaaacaacatcattggaaccttgtggaagcttgagtgttatggtactgtcaacaatgttga |
182 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| || ||||||||||||| |||||||||||||||| |||||||||||||||| ||||| | |
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|
| T |
2519215 |
ctcatgtaaggatcacaagacaagtagagatttttgagcagaagaacatcattggaagcttgtggaagcttgagagttatggtactgtcaatgatgttca |
2519314 |
T |
|
| Q |
183 |
ggtctgattctttaggaaaaccagacacatagtccttcagaatcacttgcttgttc |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
2519315 |
tgtctgattctttaggaaaaccagacacatagtgtttcagaattacttgcttgttc |
2519370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 83 - 238
Target Start/End: Original strand, 2507413 - 2507568
Alignment:
| Q |
83 |
ctcatgtaaggatcacaagacaagtacagatttttgagcaaaacaacatcattggaaccttgtggaagcttgagtgttatggtactgtcaacaatgttga |
182 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| | ||| ||| |||||||||||||| ||||||||| || |||| ||||| ||||||||||||| |
|
|
| T |
2507413 |
ctcatgtaaggatcacaagacaagtaaagatttttaaccaatacagtatcattggaaccttctggaagcttaagatttatagtactatcaacaatgttga |
2507512 |
T |
|
| Q |
183 |
ggtctgattctttaggaaaaccagacacatagtccttcagaatcacttgcttgttc |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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|
| T |
2507513 |
ggtctgattctttaggaaaaccagacacatagtgtttcagaagcacttgcttgttc |
2507568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 83 - 245
Target Start/End: Original strand, 2498881 - 2499040
Alignment:
| Q |
83 |
ctcatgtaaggatcacaagacaagtacagatttttgagcaaaacaacatcattggaaccttgtggaagcttgagtgttatggtactgtcaacaatgttga |
182 |
Q |
| |
|
|||||| | ||||||||||||||||| | |||||| |||| |||| ||||||||||||||||||||||| || || || |||| |||| |||||| | |
|
|
| T |
2498881 |
ctcatgaatggatcacaagacaagtataaattttttagcagaaca---tcattggaaccttgtggaagcttaagagtaattatactttcaataatgttca |
2498977 |
T |
|
| Q |
183 |
ggtctgattctttaggaaaaccagacacatagtccttcagaatcacttgcttgttcctcactt |
245 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2498978 |
tgtctgattctttaggaaaaccagatacatagtccttcagaatcacttgcttgttcctcactt |
2499040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 83 - 238
Target Start/End: Original strand, 2514503 - 2514658
Alignment:
| Q |
83 |
ctcatgtaaggatcacaagacaagtacagatttttgagcaaaacaacatcattggaaccttgtggaagcttgagtgttatggtactgtcaacaatgttga |
182 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| | ||| ||| |||||||||||||| ||||||||| || |||| ||||| ||||||||||||| |
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|
| T |
2514503 |
ctcatttaaggatcacaagacaagtaaagatttttaaccaatacagtatcattggaaccttctggaagcttaagatttatagtactatcaacaatgttga |
2514602 |
T |
|
| Q |
183 |
ggtctgattctttaggaaaaccagacacatagtccttcagaatcacttgcttgttc |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||| |||||||| |||| |
|
|
| T |
2514603 |
ggtctgattctttaggaaaaccagacacataatgtttcagaagcacttgctggttc |
2514658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 192
Target Start/End: Complemental strand, 11845990 - 11845932
Alignment:
| Q |
134 |
ttggaaccttgtggaagcttgagtgttatggtactgtcaacaatgttgaggtctgattc |
192 |
Q |
| |
|
||||| |||||||||| |||| |||||||||||||||||||||||| | ||||||||| |
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|
| T |
11845990 |
ttggagccttgtggaattttgaatgttatggtactgtcaacaatgttcatgtctgattc |
11845932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 192
Target Start/End: Complemental strand, 23925020 - 23924962
Alignment:
| Q |
134 |
ttggaaccttgtggaagcttgagtgttatggtactgtcaacaatgttgaggtctgattc |
192 |
Q |
| |
|
||||| |||||||||| |||| |||||||||||| ||||||||||| | ||||||||| |
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|
| T |
23925020 |
ttggagccttgtggaattttgaatgttatggtactatcaacaatgttcatgtctgattc |
23924962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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