View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21267_high_3 (Length: 391)
Name: NF21267_high_3
Description: NF21267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21267_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 19 - 374
Target Start/End: Complemental strand, 37300865 - 37300510
Alignment:
| Q |
19 |
ccaaatgcgtgaattacgaaattcccttctagaattctaaattcaaatatcttaatgatgtttgactaaactagatttgttatattaaattattttatgt |
118 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37300865 |
ccaaatgcgtgaattacggaattccctactagaattctaaattcaaatatcttaatgatgtttgactaaactagatttgttatattaaattattttatgt |
37300766 |
T |
|
| Q |
119 |
agagtgcaaattcaagccaaagcaacatgttgatattgcaagagagctgtacggatacaacagggtcatttgtgatatatgcacctgtagacatagttgc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37300765 |
agagtgcaaattcaagccaaagcaacatgttgatattgcaagagagttgtacggatacaacagggtcatttgtgatatatgcacctgtagacatagttgc |
37300666 |
T |
|
| Q |
219 |
aatgaatgtggttctaaatggaggggatccagattatgtagcacttcttccatctggatttgctatactaccagatgggacaaccacaaatggaggaggt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37300665 |
aatgaatgtggttctaaatggaggggatccagattatgtagcacttcttccatctggatttgctatactaccagatgggacaaccacaaatggaggaggt |
37300566 |
T |
|
| Q |
319 |
gttggtgaaactggacatggtggtggatctctattgactgttgcatttcaaatatt |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37300565 |
gttggtgaaactggacatggtggtggatctctattgactgttgcatttcaaatatt |
37300510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 114 - 284
Target Start/End: Original strand, 16828902 - 16829072
Alignment:
| Q |
114 |
tatgtagagtgcaaattcaagccaaagcaacatgttgatattgcaagagagctgta-cggatacaacagggtcatttgtgatatatgcacctgtagacat |
212 |
Q |
| |
|
|||| ||||| ||||||| ||||| ||||||||||| ||| | |||||||| |||| | ||| ||||||| |||||||| || ||||| || ||||| || |
|
|
| T |
16828902 |
tatgcagagtccaaattcgagccagagcaacatgttaatactacaagagag-tgtaacagatgcaacaggctcatttgttatctatgcgccagtagatat |
16829000 |
T |
|
| Q |
213 |
agttgcaatgaatgtggttctaaatggaggggatccagattatgtagcacttcttccatctggatttgctat |
284 |
Q |
| |
|
||||| |||||||| |||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
16829001 |
ggttgctatgaatgtagttctaaatggaggagatccagattatgttgcacttcttccatcaggatttgctat |
16829072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University