View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21267_high_4 (Length: 373)
Name: NF21267_high_4
Description: NF21267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21267_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 15082065 - 15082441
Alignment:
| Q |
1 |
tttttgttaatatcgcttagaatgaatgtcgtgccttgtgttaacattgtcaaagagtttgtttaa-------------------caattattcagccat |
81 |
Q |
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| T |
15082065 |
tttttgttaatatcgcttagaatgaatgtcgtgccttgtgttaacattgtcaaagagtttgtttaattggcaatgggatgttgaacaattattcagccat |
15082164 |
T |
|
| Q |
82 |
ctcttaataatca-attttgtatctcatgtaaatgctttatnnnnnnnngtttccttgaagaatttaaaaaacctgtcctatttgttgctatagacgaag |
180 |
Q |
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| T |
15082165 |
ctcttaataatcataatttgaatctcatgtaaatgctttataaaaaaaagtttcctggaagaatttaaaaaacctgtcctatttgttgctatagacgaag |
15082264 |
T |
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| Q |
181 |
gacaaagacttatttgagggcattaatagcttcttactagatatttggctaacagcattatttgctcgtctgtttccaacacaatgttaatgtgaactac |
280 |
Q |
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| T |
15082265 |
gacaaagacttatttgagggcattaatagctttttactagattttttgctaacagcattatttgctcgtctgtttccaacacaatgttaatgtgaactac |
15082364 |
T |
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| Q |
281 |
tatactgctgttttcacaacttatttggcgttttgaggtttttattgactctgaaaacaatcttgttatgcaggtgt |
357 |
Q |
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| T |
15082365 |
tatactgctgttttcacatcttatttggcgttttgaggtttttattgactctgaaaacaatcttgttatgcaggtgt |
15082441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 18661802 - 18661439
Alignment:
| Q |
1 |
tttttgttaatatcgcttagaatgaatgtcgtgccttgtgttaacattgtcaaagagtttgtttaa-------------------caattattcagccat |
81 |
Q |
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|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
18661802 |
tttttgttaatatcgcttagaatgaatgccgtgccttgtgttaacattgtcaaagagtttgtttaattggcaatgggatgttgaacaattattcagccat |
18661703 |
T |
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| Q |
82 |
ctcttaataatca-attttgtatctcatgtaaatgctttatnnnnnnnngtttccttgaagaatttaaaaaacctgtcctatttgttgctatagacgaag |
180 |
Q |
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||||||||||||| | |||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
18661702 |
ctcttaataatcataatttgaatctcatgtaaatgctttataaaaaaaagtttcctggaagaatttaaaaaacctgtcctatttgttgctatagac---- |
18661607 |
T |
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| Q |
181 |
gacaaagacttatttgagggcattaatagcttcttactagatatttggctaacagcattatttgctcgtctgtttccaacacaatgttaatgtgaactac |
280 |
Q |
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||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18661606 |
---------ttatttgagggcattaatagctttttactagattttttgctaacagcattatttgctcgtctgtttccaacacaatgttaatgtgaactac |
18661516 |
T |
|
| Q |
281 |
tatactgctgttttcacaacttatttggcgttttgaggtttttattgactctgaaaacaatcttgttatgcaggtgt |
357 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18661515 |
tatactgctgttttcacatcttatttggcgttttgaggtttttattgactctgaaaacaatcttgttatgcaggtgt |
18661439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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