View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21267_high_5 (Length: 343)
Name: NF21267_high_5
Description: NF21267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21267_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 94; Significance: 8e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 204 - 325
Target Start/End: Original strand, 1356589 - 1356710
Alignment:
| Q |
204 |
tgatccgccatttccgaagttttctccacctccacctaccccacttcaacttctcctcctgctgagatcctacaatcccataaccataccnnnnnnnnaa |
303 |
Q |
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| T |
1356589 |
tgatccgccatttccaaagttttctccacctccacctaccccacttcaacttctcctcctgctgagatcctacaatcccataaccataccttttttttaa |
1356688 |
T |
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| Q |
304 |
cataaacatcaaccttttcatt |
325 |
Q |
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|||||||||||||||||||||| |
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| T |
1356689 |
cataaacatcaaccttttcatt |
1356710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 97 - 198
Target Start/End: Original strand, 1356429 - 1356529
Alignment:
| Q |
97 |
acaacacatcttacctcagttctctttttcaaaactatataatttccttttctcaaactctgactcattcacaaacttggcattatgttgctgctagtta |
196 |
Q |
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|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1356429 |
acaacacatctttcctcagttctctttt-caaaactatataatttccttttctcaaactctcactcattcacaaacttggcattatgttgctgctagtta |
1356527 |
T |
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| Q |
197 |
tg |
198 |
Q |
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|| |
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| T |
1356528 |
tg |
1356529 |
T |
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