View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21267_low_1 (Length: 667)
Name: NF21267_low_1
Description: NF21267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21267_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 532; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 101 - 648
Target Start/End: Original strand, 29503616 - 29504163
Alignment:
| Q |
101 |
gttgttttgttgttgggagattacaagaaaaaggcatacaaaagaacaaaatctaggcctgcacttgtcgaggcgatgttacttgtgaagaaagaaaacg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
29503616 |
gttgttttgttgttgggagattacaagaaaaaggcatacaaaagaacaaaatctaggcctgcacttgtcgaggcgatgttacttgttaagaaagaaaacg |
29503715 |
T |
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| Q |
201 |
tctttgggaagaaaagtttctctacgaaggcgaggtttgatgagaagagaaaagagaatgagattgttgttgatagtttaacaggtaatagtactaatga |
300 |
Q |
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| T |
29503716 |
tttttgggaagaaaagtttctctacgaaggcgaggtttgatgagaagagaaaagagaatgagattgttgttgatagtttaacaggtaatagtactaatga |
29503815 |
T |
|
| Q |
301 |
tcctgaaatgtggattagcattgatggaattgttttgattcatgttaagaatttgcagtggaagtttagagggaatcaaacagttatggttaataaacaa |
400 |
Q |
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| T |
29503816 |
tcctgaaatgtggattagcattgatggaattgttttgattcatgttaagaatttgcagtggaaatttagagggaatcaaactgttatggttaataaacaa |
29503915 |
T |
|
| Q |
401 |
cctgtgcaagttttttgggatgttcatgattggttgtttagtggttctggttcaggacctggacttttcatttttaaaccagggcctgttgaagatgaaa |
500 |
Q |
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| T |
29503916 |
cctgtgcaagttttttgggatgttcatgattggttgtttagtggttctggttcaggacctggacttttcatttttaaaccagggcctgttgaagatgaaa |
29504015 |
T |
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| Q |
501 |
gtgaaaaggaaggtagtgctgttcaaagttgcgaaagtgatgatggtagtcttggttatcattcaactcttaataatgctacttttgagttttgtcttgt |
600 |
Q |
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| T |
29504016 |
gtgaaaaggaaggtagtgctgttcaaagttgcgaaagtgatgatggtagtcttggttatcattcaactcttaataatgctacttttgagttttgtcttgt |
29504115 |
T |
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| Q |
601 |
tctatatgcttataagattgagtaatagagttaagaaaccaaaaatgt |
648 |
Q |
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| T |
29504116 |
tctatatgcttataagattgagtaatagagttaagaaaccaaaaatgt |
29504163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 101 - 247
Target Start/End: Original strand, 29493224 - 29493370
Alignment:
| Q |
101 |
gttgttttgttgttgggagattacaagaaaaaggcatacaaaagaacaaaatctaggcctgcacttgtcgaggcgatgttacttgtgaagaaagaaaacg |
200 |
Q |
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| T |
29493224 |
gttgttttgttgttgggagattacaagaaaaaggcatacaaaagaacaaaatctaggcctgcacttgtcgaggcgatgttacttctgaagaaagaaaaca |
29493323 |
T |
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| Q |
201 |
tctttgggaagaaaagtttctctacgaaggcgaggtttgatgagaag |
247 |
Q |
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| T |
29493324 |
tttttgggaagaaaagtttctctacgaaggcgaggtttgatgagaag |
29493370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 124 - 301
Target Start/End: Original strand, 29509658 - 29509835
Alignment:
| Q |
124 |
caagaaaaaggcatacaaaagaacaaaatctaggcctgcacttgtcgaggcgatgttacttgtgaagaaagaaaacgtctttgggaagaaaagtttctct |
223 |
Q |
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| T |
29509658 |
caagaaaaaggcatagaaaagaacaaaatctaggcctgcacttgtcaaggcgatgtttcttgtgaagaaagtaaacattttctggaagaaaagtttctct |
29509757 |
T |
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| Q |
224 |
acgaaggcgaggtttgatgagaagagaaaagagaatgagattgttgttgatagtttaacaggtaatagtactaatgat |
301 |
Q |
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| T |
29509758 |
acaaaggcaaggtttaatgagaagaaaagacataatgagattgttgttgataggttaacaggtaatagtactaatgat |
29509835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 29503092 - 29503001
Alignment:
| Q |
18 |
ttaacttgcaatggcgatggtattggnnnnnnnacagagaaaaatttgtttggctgaattttggggtgagaaagagaaagtttgttgttttg |
109 |
Q |
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| T |
29503092 |
ttaacttgcaatggcgatggtattggtttttttacagagaaaaatttgtttggctgaattttggggtgagaaagagaaagtttgttgttttg |
29503001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 359 - 438
Target Start/End: Complemental strand, 42230095 - 42230016
Alignment:
| Q |
359 |
tggaagtttagagggaatcaaacagttatggttaataaacaacctgtgcaagttttttgggatgttcatgattggttgtt |
438 |
Q |
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| T |
42230095 |
tggaaatttagaggaaatgaaatagtaatggtgaataatttacctgtgcaaatcttttgggatgtgcatgattggttgtt |
42230016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 5e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 188 - 486
Target Start/End: Original strand, 37208784 - 37209079
Alignment:
| Q |
188 |
aagaaagaaaacgtctttgggaagaaaagtttctctacgaaggcgaggtttgatgagaagagaaaagagaatgagattgttgttgatagtttaacaggta |
287 |
Q |
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|||| |||||| || |||| |||||||||||||| || ||||| | |||||||||||||||||||||| ||| ||||||||||| |||| ||| | | |
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| T |
37208784 |
aagagagaaaatgtttttgcaaagaaaagtttctcaacaaaggctaaatttgatgagaagagaaaagagagtgatattgttgttgaaagttcaactgctg |
37208883 |
T |
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| Q |
288 |
atagtactaatgatcctgaaatgtggattagcattgatggaattgttttgattcatgttaagaatttgcagtggaagtttagagggaatcaaacagttat |
387 |
Q |
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| | || |||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
37208884 |
---gcaacaaagatcctgaaatgtggattagtattgatgggattgttttgattcatattaagaatttgcagtggaagtttagagggaaccaaactgttat |
37208980 |
T |
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| Q |
388 |
ggttaataaacaacctgtgcaagttttttgggatgttcatgattggttgtttagtggttctggttcaggacctggacttttcatttttaaaccagggcc |
486 |
Q |
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| T |
37208981 |
ggttaataaacaacctgtgcatgtgttttgggatgtatatgattggttgtttagtgtgtctgggtctggtcctgggctttttatcttcaaacctgggcc |
37209079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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