View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21267_low_2 (Length: 451)

Name: NF21267_low_2
Description: NF21267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21267_low_2
NF21267_low_2
[»] chr8 (31 HSPs)
chr8 (133-433)||(3417355-3417655)
chr8 (1-87)||(3417196-3417282)
chr8 (154-246)||(39205494-39205586)
chr8 (133-201)||(38576288-38576356)
chr8 (133-187)||(37732824-37732878)
chr8 (138-191)||(27441469-27441522)
chr8 (138-187)||(32414524-32414573)
chr8 (134-183)||(37064815-37064864)
chr8 (133-189)||(9197818-9197874)
chr8 (133-189)||(11686962-11687018)
chr8 (133-201)||(26654364-26654432)
chr8 (133-189)||(31602014-31602070)
chr8 (133-201)||(41974638-41974706)
chr8 (133-188)||(15198289-15198344)
chr8 (133-191)||(3043240-3043298)
chr8 (137-187)||(8372915-8372965)
chr8 (133-183)||(9197093-9197143)
chr8 (133-183)||(26652291-26652341)
chr8 (133-189)||(3043963-3044019)
chr8 (133-189)||(8373691-8373747)
chr8 (137-201)||(17725640-17725704)
chr8 (133-201)||(22320372-22320440)
chr8 (133-189)||(31641509-31641565)
chr8 (133-189)||(31642085-31642141)
chr8 (133-184)||(3165125-3165176)
chr8 (137-183)||(17724767-17724813)
chr8 (133-183)||(27442145-27442195)
chr8 (133-183)||(32979828-32979878)
chr8 (133-183)||(39778916-39778966)
chr8 (133-183)||(39779845-39779895)
chr8 (362-426)||(39205724-39205788)
[»] chr5 (30 HSPs)
chr5 (133-433)||(4084877-4085177)
chr5 (138-191)||(1554079-1554132)
chr5 (133-189)||(19128767-19128823)
chr5 (133-189)||(19360474-19360530)
chr5 (133-189)||(234698-234754)
chr5 (133-189)||(237819-237875)
chr5 (137-197)||(6476781-6476841)
chr5 (133-189)||(19359701-19359757)
chr5 (133-184)||(29046026-29046077)
chr5 (133-183)||(13306273-13306323)
chr5 (134-188)||(22799759-22799813)
chr5 (138-191)||(7632097-7632150)
chr5 (145-197)||(10554556-10554608)
chr5 (133-189)||(17071221-17071277)
chr5 (133-189)||(28705877-28705933)
chr5 (136-184)||(34709040-34709088)
chr5 (146-220)||(1281846-1281921)
chr5 (133-184)||(29087922-29087973)
chr5 (138-189)||(33471087-33471138)
chr5 (138-189)||(34600263-34600314)
chr5 (145-187)||(1283500-1283542)
chr5 (133-183)||(17071798-17071848)
chr5 (137-191)||(27364483-27364537)
chr5 (133-211)||(28705162-28705240)
chr5 (133-211)||(33005518-33005596)
chr5 (133-166)||(31081996-31082029)
chr5 (133-189)||(235589-235645)
chr5 (133-189)||(236927-236983)
chr5 (133-197)||(25858207-25858271)
chr5 (138-182)||(38056796-38056840)
[»] chr1 (32 HSPs)
chr1 (173-426)||(33504113-33504366)
chr1 (133-197)||(13262830-13262894)
chr1 (133-189)||(25469085-25469141)
chr1 (133-201)||(28182059-28182127)
chr1 (133-189)||(30663975-30664031)
chr1 (138-189)||(28181535-28181586)
chr1 (134-183)||(37852521-37852570)
chr1 (133-205)||(4135527-4135599)
chr1 (133-189)||(7406242-7406298)
chr1 (133-201)||(49680808-49680876)
chr1 (133-188)||(50271783-50271838)
chr1 (138-184)||(4439210-4439256)
chr1 (133-191)||(8987787-8987845)
chr1 (133-191)||(25671167-25671225)
chr1 (137-211)||(34309207-34309281)
chr1 (349-422)||(22420180-22420253)
chr1 (133-206)||(32038474-32038547)
chr1 (133-189)||(13263515-13263571)
chr1 (138-182)||(17171933-17171977)
chr1 (133-189)||(30663355-30663411)
chr1 (137-201)||(49681660-49681724)
chr1 (133-219)||(9778940-9779027)
chr1 (146-201)||(30931898-30931953)
chr1 (134-201)||(36389773-36389840)
chr1 (138-184)||(4433851-4433897)
chr1 (133-171)||(12760773-12760811)
chr1 (133-183)||(19172580-19172630)
chr1 (133-183)||(36390372-36390422)
chr1 (138-191)||(169624-169677)
chr1 (133-189)||(10121551-10121607)
chr1 (133-197)||(19171775-19171839)
chr1 (133-189)||(25468507-25468563)
[»] chr6 (18 HSPs)
chr6 (186-330)||(12345885-12346029)
chr6 (137-211)||(19323743-19323817)
chr6 (133-211)||(19653967-19654045)
chr6 (137-189)||(2512439-2512491)
chr6 (133-189)||(10171273-10171329)
chr6 (133-189)||(26529511-26529567)
chr6 (133-188)||(33435337-33435392)
chr6 (133-183)||(8489284-8489334)
chr6 (134-187)||(33436274-33436327)
chr6 (133-189)||(10171964-10172020)
chr6 (134-186)||(19311828-19311880)
chr6 (145-201)||(19322992-19323048)
chr6 (133-189)||(21133225-21133281)
chr6 (133-189)||(26528820-26528876)
chr6 (133-196)||(18227729-18227791)
chr6 (133-191)||(505534-505592)
chr6 (133-189)||(3623172-3623228)
chr6 (133-189)||(8488466-8488522)
[»] chr2 (30 HSPs)
chr2 (133-287)||(29559320-29559474)
chr2 (133-198)||(1296377-1296442)
chr2 (133-198)||(9276319-9276384)
chr2 (138-206)||(15774205-15774273)
chr2 (137-191)||(9540333-9540387)
chr2 (138-191)||(22301866-22301919)
chr2 (133-201)||(1297109-1297177)
chr2 (133-201)||(9275584-9275652)
chr2 (137-197)||(24933838-24933898)
chr2 (139-191)||(26752719-26752771)
chr2 (137-197)||(29719448-29719508)
chr2 (133-184)||(29512369-29512420)
chr2 (133-187)||(33512095-33512149)
chr2 (145-198)||(38361077-38361130)
chr2 (133-189)||(18174668-18174724)
chr2 (133-189)||(22560566-22560622)
chr2 (138-182)||(27177915-27177959)
chr2 (133-201)||(36237629-36237697)
chr2 (133-187)||(8541749-8541803)
chr2 (133-183)||(11751073-11751123)
chr2 (133-183)||(18174097-18174147)
chr2 (133-183)||(22301192-22301242)
chr2 (134-184)||(23343778-23343828)
chr2 (133-183)||(23857028-23857078)
chr2 (142-191)||(11007238-11007287)
chr2 (146-187)||(16692974-16693015)
chr2 (133-189)||(11750255-11750311)
chr2 (133-197)||(12725605-12725669)
chr2 (133-197)||(18820430-18820494)
chr2 (133-189)||(19918720-19918776)
[»] chr7 (42 HSPs)
chr7 (133-290)||(16664023-16664180)
chr7 (133-290)||(17638383-17638540)
chr7 (1-79)||(18829590-18829668)
chr7 (177-410)||(22319973-22320201)
chr7 (247-410)||(3163686-3163845)
chr7 (1-60)||(44472350-44472409)
chr7 (1-60)||(22022449-22022508)
chr7 (138-191)||(1417610-1417663)
chr7 (133-198)||(25343229-25343294)
chr7 (138-191)||(38225972-38226025)
chr7 (133-201)||(25342494-25342562)
chr7 (133-201)||(25343300-25343368)
chr7 (134-197)||(7668480-7668543)
chr7 (133-192)||(46428184-46428243)
chr7 (133-211)||(26636100-26636178)
chr7 (133-182)||(36378809-36378858)
chr7 (133-189)||(27948443-27948499)
chr7 (133-201)||(30660590-30660658)
chr7 (133-201)||(37950454-37950522)
chr7 (133-189)||(45099892-45099948)
chr7 (178-253)||(3163585-3163660)
chr7 (133-184)||(25599019-25599070)
chr7 (133-184)||(46428821-46428872)
chr7 (137-187)||(13785594-13785644)
chr7 (137-211)||(30661432-30661506)
chr7 (137-211)||(37949606-37949680)
chr7 (138-183)||(3029203-3029248)
chr7 (133-198)||(3772516-3772581)
chr7 (136-189)||(21496982-21497035)
chr7 (133-182)||(23889812-23889861)
chr7 (134-198)||(18977759-18977823)
chr7 (138-210)||(24389594-24389666)
chr7 (133-189)||(40273557-40273613)
chr7 (134-189)||(26636859-26636914)
chr7 (146-220)||(47719671-47719746)
chr7 (137-211)||(19067638-19067712)
chr7 (149-194)||(3027987-3028032)
chr7 (159-192)||(5930525-5930558)
chr7 (146-187)||(23901095-23901136)
chr7 (140-185)||(43065119-43065164)
chr7 (134-183)||(45099136-45099185)
chr7 (137-201)||(3688385-3688449)
[»] chr4 (33 HSPs)
chr4 (1-60)||(6507990-6508049)
chr4 (136-277)||(7842440-7842581)
chr4 (133-211)||(8247694-8247772)
chr4 (133-192)||(47785795-47785854)
chr4 (138-195)||(142517-142574)
chr4 (133-201)||(8248507-8248575)
chr4 (139-211)||(8265365-8265437)
chr4 (133-201)||(8266172-8266240)
chr4 (133-197)||(24374787-24374851)
chr4 (137-197)||(19080387-19080447)
chr4 (133-189)||(26147031-26147087)
chr4 (138-189)||(11938714-11938765)
chr4 (133-183)||(598523-598573)
chr4 (138-184)||(599305-599351)
chr4 (133-191)||(31329714-31329772)
chr4 (133-201)||(7841791-7841857)
chr4 (133-190)||(9365167-9365224)
chr4 (133-189)||(20774179-20774235)
chr4 (133-189)||(24158819-24158875)
chr4 (133-189)||(30573708-30573764)
chr4 (133-181)||(40495093-40495141)
chr4 (133-189)||(47688478-47688534)
chr4 (137-189)||(56262480-56262532)
chr4 (138-192)||(1866346-1866400)
chr4 (133-183)||(44792641-44792691)
chr4 (133-183)||(47687907-47687957)
chr4 (145-187)||(55976176-55976218)
chr4 (134-183)||(44469491-44469540)
chr4 (140-189)||(55001439-55001488)
chr4 (148-220)||(55976922-55976995)
chr4 (133-197)||(1465318-1465382)
chr4 (158-198)||(16902903-16902943)
chr4 (145-189)||(16903642-16903686)
[»] chr3 (38 HSPs)
chr3 (133-201)||(45081390-45081458)
chr3 (133-189)||(48648201-48648257)
chr3 (133-184)||(14871151-14871202)
chr3 (133-191)||(13477055-13477113)
chr3 (135-201)||(37520548-37520614)
chr3 (133-189)||(20213530-20213586)
chr3 (133-201)||(46150716-46150784)
chr3 (133-184)||(37988222-37988273)
chr3 (134-189)||(51827493-51827548)
chr3 (133-171)||(10847289-10847327)
chr3 (133-183)||(20212978-20213028)
chr3 (137-187)||(21727530-21727580)
chr3 (138-195)||(8949938-8949995)
chr3 (138-187)||(17603171-17603220)
chr3 (133-198)||(52266443-52266508)
chr3 (145-189)||(981677-981721)
chr3 (133-189)||(27082774-27082830)
chr3 (138-198)||(31974654-31974714)
chr3 (137-189)||(48507031-48507083)
chr3 (133-189)||(48764475-48764531)
chr3 (138-189)||(13349418-13349469)
chr3 (146-189)||(13477777-13477820)
chr3 (134-189)||(48765069-48765124)
chr3 (134-184)||(265102-265152)
chr3 (147-220)||(17603928-17604002)
chr3 (155-205)||(23706786-23706836)
chr3 (155-205)||(23725242-23725292)
chr3 (155-205)||(23743698-23743748)
chr3 (133-183)||(33276890-33276940)
chr3 (133-183)||(33277509-33277559)
chr3 (133-171)||(44029786-44029824)
chr3 (133-183)||(48413317-48413367)
chr3 (135-189)||(48649172-48649226)
chr3 (140-189)||(48506443-48506491)
chr3 (133-190)||(52281764-52281821)
chr3 (133-170)||(52605501-52605538)
chr3 (138-183)||(54458670-54458715)
chr3 (133-189)||(41458031-41458087)
[»] scaffold0176 (1 HSPs)
scaffold0176 (133-196)||(26589-26652)
[»] scaffold0085 (3 HSPs)
scaffold0085 (146-198)||(15848-15900)
scaffold0085 (133-189)||(15020-15076)
scaffold0085 (134-189)||(15080-15135)
[»] scaffold0002 (1 HSPs)
scaffold0002 (133-189)||(428900-428956)
[»] scaffold1207 (1 HSPs)
scaffold1207 (137-183)||(1588-1634)
[»] scaffold0418 (1 HSPs)
scaffold0418 (133-181)||(6891-6939)
[»] scaffold0504 (1 HSPs)
scaffold0504 (133-182)||(5385-5434)


Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 133 - 433
Target Start/End: Original strand, 3417355 - 3417655
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaattaaaggtctataatcgttggttcaccg 232  Q
    ||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3417355 gagtcaggatctgttgacatctggtgttaacgaattcgttgacaccaaatcttaaccatccattttattcaattaaaggtctataatcgttggttcaccg 3417454  T
Q  233 aataaaattaaattgaaaacaaagcattattgtactatttcttttcttctgcaaaatttgacgttcttcttcacaccaacccaacagtatatttgtttcg 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3417455 aataaaattaaattgaaaacaaagcattattgtactatttcttttcttctgcaaaatttgacgttcttcttcacaccaacccaacagtatatttgtttcg 3417554  T
Q  333 atcgcagctcgtcaccaagatatttcttatttatgtcaaatttattaaattgatcgcaataggagtatgatagtgaatttggagatattttggatgagtt 432  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  3417555 atcgcagctcctcaccaagatatttcttatttatgtcaaatttattaaattgatcgcaataggagtataatagtgaatttggagatattttggaagagtt 3417654  T
Q  433 t 433  Q
    |    
T  3417655 t 3417655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 3417196 - 3417282
Alignment:
Q  1 aaaataatcaaatgataacctgtggacatccaaggctgaataatataaaaagacttgctacatacaaaagccattactcacaattac 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3417196 aaaataatcaaatgataacctgtggacatccaaggctgaataatataaaaagacttgctacatacaaaagccattactcacaattac 3417282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 154 - 246
Target Start/End: Original strand, 39205494 - 39205586
Alignment:
Q  154 tggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaattaaaggtctataatcgttggttcaccgaataaaattaaatt 246  Q
    |||||||||||||| ||| |||| ||||||| ||||||| |||||||| ||| ||||||||||||||| | |||||||||||||| |||||||    
T  39205494 tggtgtcaacgaatccgttgacatcaaatctcaaccatctattttatttaatcaaaggtctataatcgcttgttcaccgaataaacttaaatt 39205586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 38576356 - 38576288
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 201  Q
    |||| |||||| ||||||||| |||||||||| |||||| |||||||||||| ||||||| ||||||||    
T  38576356 gagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccatcaattttatt 38576288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 37732824 - 37732878
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaa 187  Q
    ||||||||||| |||||||||||||||||||| |||||| ||||||||| |||||    
T  37732824 gagtcaggatccgttgacacctggtgtcaacggattcgttgacaccaaaacttaa 37732878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 27441469 - 27441522
Alignment:
Q  138 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccat 191  Q
    |||||| ||||||||| ||||||||||||||||| |||| ||||||||||||||    
T  27441469 aggatccgttgacaccaggtgtcaacgaattcgttgacatcaaatcttaaccat 27441522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 32414573 - 32414524
Alignment:
Q  138 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaa 187  Q
    |||||||||||||||| |||||||||| |||||| |||||||||||||||    
T  32414573 aggatctgttgacaccaggtgtcaacggattcgttgacaccaaatcttaa 32414524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 37064815 - 37064864
Alignment:
Q  134 agtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 183  Q
    |||||||||||||||||||| ||||||||||||||| | |||||||||||    
T  37064815 agtcaggatctgttgacaccaggtgtcaacgaattcattgacaccaaatc 37064864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 9197874 - 9197818
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    ||||||||||| |||||||||  |||||||||||||||| ||||||||||| |||||    
T  9197874 gagtcaggatccgttgacaccaagtgtcaacgaattcgttgacaccaaatcctaacc 9197818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 11687018 - 11686962
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    |||| |||||| ||||||||||||||||||||||||||| ||||| |||||| ||||    
T  11687018 gagttaggatccgttgacacctggtgtcaacgaattcgttgacactaaatctcaacc 11686962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 26654432 - 26654364
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 201  Q
    |||||| |||| ||||||||| |||||||| | |||||| ||||||||||||||||| || ||||||||    
T  26654432 gagtcaagatccgttgacaccaggtgtcaatggattcgttgacaccaaatcttaaccgtctattttatt 26654364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 31602014 - 31602070
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    |||| |||||| ||||||||| ||||||||||||||||| |||||||||||| ||||    
T  31602014 gagttaggatcggttgacaccaggtgtcaacgaattcgttgacaccaaatctcaacc 31602070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 41974638 - 41974706
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 201  Q
    ||||||||||| ||||||||| |||||||||| |||||| |||||||||||| | |||| |||| ||||    
T  41974638 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcagccattcattatatt 41974706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 15198344 - 15198289
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaac 188  Q
    |||||||||||  ||||||||||||||||||||||| || |||||||||| |||||    
T  15198344 gagtcaggatcctttgacacctggtgtcaacgaatttgttgacaccaaattttaac 15198289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 3043240 - 3043298
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccat 191  Q
    |||| |||||| ||||||||||||||||||| ||||| | ||||||||||| |||||||    
T  3043240 gagttaggatccgttgacacctggtgtcaacaaattcattgacaccaaatcctaaccat 3043298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 8372915 - 8372965
Alignment:
Q  137 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaa 187  Q
    ||||||| |||||||||||||||||||| |||||| |||||||||| ||||    
T  8372915 caggatccgttgacacctggtgtcaacggattcgttgacaccaaatattaa 8372965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 9197093 - 9197143
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 183  Q
    ||||||| ||| ||||||||| ||||||||||||||||| |||||||||||    
T  9197093 gagtcagaatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 9197143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 26652291 - 26652341
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 183  Q
    ||||||||||| ||||||||| |||||||||||||||||  ||||||||||    
T  26652291 gagtcaggatccgttgacaccaggtgtcaacgaattcgttaacaccaaatc 26652341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 3044019 - 3043963
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    |||| |||||| || |||||| ||||||||||||||||| |||||||||| ||||||    
T  3044019 gagttaggatccgtcgacaccaggtgtcaacgaattcgttgacaccaaatgttaacc 3043963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 8373747 - 8373691
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    ||||||||||| |||||||||  ||||||||| |||||| |||||||||| ||||||    
T  8373747 gagtcaggatccgttgacaccaagtgtcaacggattcgttgacaccaaatattaacc 8373691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 17725704 - 17725640
Alignment:
Q  137 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 201  Q
    ||||||| ||||||| | ||||||||||||||||| ||||||||||| || ||||  ||||||||    
T  17725704 caggatccgttgacagcaggtgtcaacgaattcgttgacaccaaatcctatccatttattttatt 17725640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 22320372 - 22320440
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 201  Q
    ||||||||||| |||||  || |||||||||| |||||| ||||||||||||||| | || ||||||||    
T  22320372 gagtcaggatccgttgatgccaggtgtcaacggattcgttgacaccaaatcttaatcgtctattttatt 22320440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 31641509 - 31641565
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    |||||||||||  |||||||| |||||||| | |||||| |||||||||||||||||    
T  31641509 gagtcaggatccattgacaccaggtgtcaatggattcgttgacaccaaatcttaacc 31641565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 31642141 - 31642085
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    |||||||||||  |||||||| | ||||||||||||||| |||||||||||| ||||    
T  31642141 gagtcaggatccattgacaccagatgtcaacgaattcgttgacaccaaatctcaacc 31642085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 184
Target Start/End: Complemental strand, 3165176 - 3165125
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatct 184  Q
    ||||||||||| ||||||| | |||||||||| |||||| ||||||||||||    
T  3165176 gagtcaggatccgttgacatcaggtgtcaacggattcgttgacaccaaatct 3165125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 17724767 - 17724813
Alignment:
Q  137 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 183  Q
    ||||||| |||||||||||||||||||  |||||| |||||||||||    
T  17724767 caggatcagttgacacctggtgtcaacagattcgttgacaccaaatc 17724813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 27442195 - 27442145
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 183  Q
    ||||||||||| ||||||||| ||||||||||||| |||  ||||||||||    
T  27442195 gagtcaggatccgttgacaccaggtgtcaacgaatccgttaacaccaaatc 27442145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 32979878 - 32979828
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 183  Q
    ||||||||||| ||||||||| |||||||||||||| ||  ||||||||||    
T  32979878 gagtcaggatccgttgacaccaggtgtcaacgaatttgttaacaccaaatc 32979828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 39778916 - 39778966
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 183  Q
    |||||||||||  |||||||| |||||||||||||||||  ||||||||||    
T  39778916 gagtcaggatccattgacaccaggtgtcaacgaattcgttaacaccaaatc 39778966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 39779895 - 39779845
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 183  Q
    |||||||||||  |||||||| |||||||||||||||||  ||||||||||    
T  39779895 gagtcaggatccattgacaccaggtgtcaacgaattcgttaacaccaaatc 39779845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 426
Target Start/End: Original strand, 39205724 - 39205788
Alignment:
Q  362 tttatgtcaaatttattaaattgatcgcaataggagtatgatagtgaatttggagatattttgga 426  Q
    |||||||||||||||||||| |||| |||||| ||| | | || |||| |||| |||||||||||    
T  39205724 tttatgtcaaatttattaaagtgattgcaatatgagcacggtaatgaacttggggatattttgga 39205788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 133 - 433
Target Start/End: Original strand, 4084877 - 4085177
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaattaaaggtctataatcgttggttcaccg 232  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||    
T  4084877 gagtcaggatccgttgacacctggtgtcaacgaattcgttgacaccaaatctcaaccattcattttattcaattaaaggtctataatcgctggttcaccg 4084976  T
Q  233 aataaaattaaattgaaaacaaagcattattgtactatttcttttcttctgcaaaatttgacgttcttcttcacaccaacccaacagtatatttgtttcg 332  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  4084977 aataaaattaaattgaaaacacagtattattgtactatttcttttcttctgcaaaatttgacgttcttcctcacaccaacccaacagtatacttgtttcg 4085076  T
Q  333 atcgcagctcgtcaccaagatatttcttatttatgtcaaatttattaaattgatcgcaataggagtatgatagtgaatttggagatattttggatgagtt 432  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4085077 atcgcagctcctcaccaagatatttcttatttatgtcaaatttattaaattgatcgcaataggagtatgatagtgaatttggagatattttggatgagtt 4085176  T
Q  433 t 433  Q
    |    
T  4085177 t 4085177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 1554132 - 1554079
Alignment:
Q  138 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccat 191  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||||||||||||    
T  1554132 aggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatcttaaccat 1554079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 19128767 - 19128823
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    ||||||||||| ||||||||| |||||||||| |||||| |||||||||||||||||    
T  19128767 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatcttaacc 19128823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 19360530 - 19360474
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    ||||||||||| ||||||||| ||||||||||||||||| |||||||||| ||||||    
T  19360530 gagtcaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatattaacc 19360474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 234698 - 234754
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    ||||||||||| ||||||||| |||||||||| |||||| |||||||||| ||||||    
T  234698 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatattaacc 234754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 237875 - 237819
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    ||||||||||| ||||||||| |||||||||| |||||| |||||||||| ||||||    
T  237875 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatattaacc 237819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 6476841 - 6476781
Alignment:
Q  137 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattt 197  Q
    ||||||| ||||||||| |||||||||| |||||| |||||||||||| |||||| |||||    
T  6476841 caggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccattcattt 6476781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 19359701 - 19359757
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    ||||||||||| ||||||||| |||||||||| |||||| |||||||||| ||||||    
T  19359701 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatattaacc 19359757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 29046026 - 29046077
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatct 184  Q
    ||||||||||| ||||||||| |||||||||| |||||| ||||||||||||    
T  29046026 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 29046077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 13306323 - 13306273
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 183  Q
    ||||||||||| ||||||||||| ||||||||||||||| |||| ||||||    
T  13306323 gagtcaggatccgttgacacctgatgtcaacgaattcgttgacatcaaatc 13306273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 22799813 - 22799759
Alignment:
Q  134 agtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaac 188  Q
    |||||| ||| ||||||||| |||||||| |||||||| ||||||||||||||||    
T  22799813 agtcagaatccgttgacaccaggtgtcaatgaattcgttgacaccaaatcttaac 22799759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 7632097 - 7632150
Alignment:
Q  138 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccat 191  Q
    |||||| ||||||||| |||||||||| |||||| |||||||||||||| ||||    
T  7632097 aggatccgttgacaccaggtgtcaacggattcgttgacaccaaatcttatccat 7632150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 10554556 - 10554608
Alignment:
Q  145 gttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattt 197  Q
    ||||||||| |||||||||| |||||| |||||||||||| |||||| |||||    
T  10554556 gttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccattcattt 10554608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 17071221 - 17071277
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    |||| |||||| ||||||| | ||||||||||||||||| |||||||||||| ||||    
T  17071221 gagttaggatccgttgacatcaggtgtcaacgaattcgttgacaccaaatctcaacc 17071277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 28705933 - 28705877
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    ||||||||||| ||||||||| |||||||||| |||||| ||||| |||||| ||||    
T  28705933 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacactaaatctcaacc 28705877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 34709088 - 34709040
Alignment:
Q  136 tcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatct 184  Q
    |||||||||||||||||| |||||||||| |||||| | ||||||||||    
T  34709088 tcaggatctgttgacaccaggtgtcaacggattcgttggcaccaaatct 34709040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 220
Target Start/End: Original strand, 1281846 - 1281921
Alignment:
Q  146 ttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaat-taaaggtctataatc 220  Q
    |||||||| |||||||||| |||||| ||||||||||||||| | | ||||| ||| ||| |||||||| ||||||    
T  1281846 ttgacaccaggtgtcaacggattcgttgacaccaaatcttaaacgttcatttaatttaatctaaaggtcaataatc 1281921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 29087922 - 29087973
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatct 184  Q
    ||||||||||| ||||||||| |||||||||| |||| | ||||||||||||    
T  29087922 gagtcaggatccgttgacaccaggtgtcaacggattcattgacaccaaatct 29087973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 189
Target Start/End: Complemental strand, 33471138 - 33471087
Alignment:
Q  138 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    ||||||||||||||||  |||||||||||||||| |||| ||||||| ||||    
T  33471138 aggatctgttgacaccacgtgtcaacgaattcgttgacaacaaatctcaacc 33471087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 189
Target Start/End: Original strand, 34600263 - 34600314
Alignment:
Q  138 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    |||||| ||||||| | ||||||||||||||||| |||||||||||| ||||    
T  34600263 aggatccgttgacatcaggtgtcaacgaattcgttgacaccaaatctcaacc 34600314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 1283542 - 1283500
Alignment:
Q  145 gttgacacctggtgtcaacgaattcgtcgacaccaaatcttaa 187  Q
    ||||||||| |||||||||| |||||| |||||||||||||||    
T  1283542 gttgacaccaggtgtcaacggattcgttgacaccaaatcttaa 1283500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 17071848 - 17071798
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 183  Q
    |||| |||||| ||||||||| ||||| ||||||||||| |||||||||||    
T  17071848 gagttaggatccgttgacaccaggtgttaacgaattcgttgacaccaaatc 17071798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 27364537 - 27364483
Alignment:
Q  137 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccat 191  Q
    ||||||| ||||||||| |||||||| | |||||| |||||||||||| ||||||    
T  27364537 caggatccgttgacaccaggtgtcaatggattcgttgacaccaaatctcaaccat 27364483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 211
Target Start/End: Original strand, 28705162 - 28705240
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaattaaagg 211  Q
    ||||||| ||| ||||||||| |||||||||| ||||||  ||||||||||| |||||  |||| |||| ||| |||||    
T  28705162 gagtcagtatccgttgacaccaggtgtcaacggattcgtttacaccaaatctcaaccagacattatatttaatcaaagg 28705240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 211
Target Start/End: Original strand, 33005518 - 33005596
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaattaaagg 211  Q
    |||||| |||| |||||||||  ||||||| |||||||| ||||| ||||||||||| |  |||||||| ||| |||||    
T  33005518 gagtcatgatccgttgacaccaagtgtcaatgaattcgttgacacaaaatcttaaccgttgattttatttaatcaaagg 33005596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 166
Target Start/End: Original strand, 31081996 - 31082029
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaa 166  Q
    ||||||||||| ||||||||||||||||||||||    
T  31081996 gagtcaggatccgttgacacctggtgtcaacgaa 31082029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 235589 - 235645
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    |||| ||||||  |||||||| |||||||||| |||||| |||||||||||| ||||    
T  235589 gagttaggatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaacc 235645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 236983 - 236927
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    |||| ||||||  |||||||| |||||||||| |||||| |||||||||||| ||||    
T  236983 gagttaggatccattgacaccaggtgtcaacggattcgtagacaccaaatctcaacc 236927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 25858207 - 25858271
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattt 197  Q
    ||||| ||||| ||||||||  |||||||||| |||||| ||||||||||| ||| | |||||||    
T  25858207 gagtcgggatccgttgacactaggtgtcaacggattcgttgacaccaaatcataatcttccattt 25858271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 38056796 - 38056840
Alignment:
Q  138 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaat 182  Q
    |||||||||||||||| |||||||||| ||| || ||||||||||    
T  38056796 aggatctgttgacaccaggtgtcaacggattggttgacaccaaat 38056840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 162; Significance: 3e-86; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 173 - 426
Target Start/End: Original strand, 33504113 - 33504366
Alignment:
Q  173 gacaccaaatcttaaccatccattttattcaattaaaggtctataatcgttggttcaccgaataaaattaaattgaaaacaaagcattattgtactattt 272  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||||| ||| || ||||||||||| |||    
T  33504113 gacaccaaatctcaaccatccattttattcaatcaaaggtctataatcgtttgttcatcgaataaacttaaattgaacacacagtattattgtactcttt 33504212  T
Q  273 cttttcttctgcaaaatttgacgttcttcttcacaccaacccaacagtatatttgtttcgatcgcagctcgtcaccaagatatttcttatttatgtcaaa 372  Q
    ||||||||||||||||||||||  ||||| |||||||||||||||| |||| |||||| ||||||| ||| |||  |||||||||| |||||||||||||    
T  33504213 cttttcttctgcaaaatttgacactcttcctcacaccaacccaacaatatacttgtttggatcgcaactcctcatgaagatatttcctatttatgtcaaa 33504312  T
Q  373 tttattaaattgatcgcaataggagtatgatagtgaatttggagatattttgga 426  Q
    ||||||||||||||||||||||||||||| |||||||||| | |||||||||||    
T  33504313 tttattaaattgatcgcaataggagtatggtagtgaatttagggatattttgga 33504366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 13262830 - 13262894
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattt 197  Q
    |||| |||||| ||||||||| ||||||||||||||||| |||||||||||| |||| |||||||    
T  13262830 gagttaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaaccctccattt 13262894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 25469141 - 25469085
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    ||||||||||| ||||||||| |||||||||| |||||| |||||||||||||||||    
T  25469141 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatcttaacc 25469085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 28182127 - 28182059
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 201  Q
    |||| |||||||||||||||| |||||||||| |||| | ||||||||||||||||| || ||||||||    
T  28182127 gagtgaggatctgttgacaccaggtgtcaacggattctttgacaccaaatcttaaccgtctattttatt 28182059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 30664031 - 30663975
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    ||||||||||| |||||||||||||||||||| |||||| |||||||||||| ||||    
T  30664031 gagtcaggatccgttgacacctggtgtcaacggattcgttgacaccaaatctcaacc 30663975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 189
Target Start/End: Original strand, 28181535 - 28181586
Alignment:
Q  138 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||| ||||    
T  28181535 aggatccgttgacacctggtgtcaacgaattcgttgacaccaaatctcaacc 28181586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 37852521 - 37852570
Alignment:
Q  134 agtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 183  Q
    |||||||||| |||||||||||||||||||||||||||  ||||||||||    
T  37852521 agtcaggatccgttgacacctggtgtcaacgaattcgttaacaccaaatc 37852570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 205
Target Start/End: Complemental strand, 4135599 - 4135527
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaat 205  Q
    |||| |||||| |||| || | |||||||||  |||||| |||||||||||||||||||| ||||||||||||    
T  4135599 gagttaggatccgttggcatcaggtgtcaacatattcgttgacaccaaatcttaaccatcaattttattcaat 4135527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 7406242 - 7406298
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    ||||||||||| ||||||||| ||||| ||||||||||| |||||||||||| ||||    
T  7406242 gagtcaggatccgttgacaccaggtgttaacgaattcgttgacaccaaatctcaacc 7406298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 49680808 - 49680876
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 201  Q
    |||| |||||| ||||||||| |||||||||| |||||| |||||||||||| | ||||| ||||||||    
T  49680808 gagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcatccatcaattttatt 49680876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 50271838 - 50271783
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaac 188  Q
    ||||||||||| ||||||||| ||| |||| |||||||| ||||||||||||||||    
T  50271838 gagtcaggatccgttgacaccaggtatcaatgaattcgttgacaccaaatcttaac 50271783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 4439256 - 4439210
Alignment:
Q  138 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatct 184  Q
    |||||| |||||||||||||||||||| |||||| ||||||||||||    
T  4439256 aggatccgttgacacctggtgtcaacggattcgttgacaccaaatct 4439210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 8987787 - 8987845
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccat 191  Q
    ||||||||||| ||||||| | |||||||||| |||||| |||||||||||| ||||||    
T  8987787 gagtcaggatcggttgacatcaggtgtcaacggattcgttgacaccaaatctcaaccat 8987845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 25671167 - 25671225
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccat 191  Q
    ||||||||||| ||||||||||||||| |||| ||||||  |||||||||| |||||||    
T  25671167 gagtcaggatccgttgacacctggtgttaacggattcgttaacaccaaatcctaaccat 25671225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 34309281 - 34309207
Alignment:
Q  137 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaattaaagg 211  Q
    ||||||| ||||||||| |||||||||| |||||| |||||||||||| |||| |  |||||||| ||| |||||    
T  34309281 caggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgttgattttatttaatcaaagg 34309207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 422
Target Start/End: Complemental strand, 22420253 - 22420180
Alignment:
Q  349 aagatatttcttatttatgtcaaatttattaaattgatcgcaataggagtatgatagtgaatttggagatattt 422  Q
    |||| ||||||| |||||||||||||||| ||||||||| |||| |||||| | | |||||||| | |||||||    
T  22420253 aagacatttcttgtttatgtcaaatttataaaattgatctcaattggagtaagtttgtgaatttagggatattt 22420180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 32038474 - 32038547
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaatt 206  Q
    |||| |||||| ||||| ||| ||||||||||||||||| |||||||||||| |||| || | |||||| ||||    
T  32038474 gagttaggatcggttgataccaggtgtcaacgaattcgttgacaccaaatctcaaccgtctaatttatttaatt 32038547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 13263571 - 13263515
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    ||||||||||| ||||||||| |||||||| | |||||| |||||||||||| ||||    
T  13263571 gagtcaggatccgttgacaccaggtgtcaatggattcgttgacaccaaatctcaacc 13263515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 17171933 - 17171977
Alignment:
Q  138 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaat 182  Q
    |||||| ||||||||| ||||||||||||||||| ||||||||||    
T  17171933 aggatccgttgacaccaggtgtcaacgaattcgttgacaccaaat 17171977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 30663355 - 30663411
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    ||||||||||| ||||||||| ||| |||||| |||||| |||||||||||| ||||    
T  30663355 gagtcaggatccgttgacaccaggtatcaacggattcgttgacaccaaatctcaacc 30663411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 49681724 - 49681660
Alignment:
Q  137 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 201  Q
    ||||||| ||||||||| | | ||||||||| ||| |||||||||||| ||||||| ||||||||    
T  49681724 caggatccgttgacaccagatatcaacgaatccgttgacaccaaatctcaaccatcgattttatt 49681660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 9779027 - 9778940
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaat-taaaggtctataat 219  Q
    ||||||||||| |||||||||||||||||||| ||   | ||||||||||||  |||||| ||||| || |||  |||||||||||||    
T  9779027 gagtcaggatccgttgacacctggtgtcaacggatagtttgacaccaaatctccaccatctattttttttaatccaaaggtctataat 9778940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 201
Target Start/End: Original strand, 30931898 - 30931953
Alignment:
Q  146 ttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 201  Q
    |||||||| |||||||||| ||||||  ||||||||||||||||||| | ||||||    
T  30931898 ttgacaccaggtgtcaacggattcgttaacaccaaatcttaaccatctaatttatt 30931953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 201
Target Start/End: Original strand, 36389773 - 36389840
Alignment:
Q  134 agtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 201  Q
    |||||||||| |||||||||||||||||||| ||| |  ||||||||||||  ||| || ||||||||    
T  36389773 agtcaggatccgttgacacctggtgtcaacggatttgctgacaccaaatctcgaccgtctattttatt 36389840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 4433897 - 4433851
Alignment:
Q  138 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatct 184  Q
    |||||| ||||||||| |||||||||| |||||| ||||||||||||    
T  4433897 aggatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 4433851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 12760773 - 12760811
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgt 171  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  12760773 gagttaggatccgttgacacctggtgtcaacgaattcgt 12760811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 19172630 - 19172580
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 183  Q
    |||||||||||  |||||||| |||||||||| |||||| |||||||||||    
T  19172630 gagtcaggatccattgacaccaggtgtcaacggattcgttgacaccaaatc 19172580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 36390422 - 36390372
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 183  Q
    |||| |||||| ||||||||| ||||||||||||| ||| |||||||||||    
T  36390422 gagttaggatccgttgacaccaggtgtcaacgaatccgttgacaccaaatc 36390372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 169677 - 169624
Alignment:
Q  138 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccat 191  Q
    |||||| ||||||||| ||||||||||||||  | |||||||||||| ||||||    
T  169677 aggatccgttgacaccaggtgtcaacgaatttattgacaccaaatctcaaccat 169624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 10121607 - 10121551
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    |||| |||||| ||||||||| |||||||||| ||| || |||||||||||| ||||    
T  10121607 gagttaggatccgttgacaccaggtgtcaacggattggttgacaccaaatctcaacc 10121551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 19171775 - 19171839
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattt 197  Q
    ||||| ||||| ||||||| |  ||||||||| |||||| ||||||||||| ||||| |||||||    
T  19171775 gagtcgggatccgttgacatcaagtgtcaacggattcgttgacaccaaatcctaaccttccattt 19171839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 25468507 - 25468563
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    |||||||||||  |||||||| |||||||||| |||| | |||||||||||| ||||    
T  25468507 gagtcaggatccattgacaccaggtgtcaacggattcattgacaccaaatctcaacc 25468563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 186 - 330
Target Start/End: Complemental strand, 12346029 - 12345885
Alignment:
Q  186 aaccatccattttattcaattaaaggtctataatcgttggttcaccgaataaaattaaattgaaaacaaagcattattgtactatttcttttcttctgca 285  Q
    ||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  12346029 aaccatctattttattcaatcaaaggtctataatcgttgattcaccgaataaaattaaattgaaaacacagtattattgtactatttcttttcttctgca 12345930  T
Q  286 aaatttgacgttcttcttcacaccaacccaacagtatatttgttt 330  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||    
T  12345929 aaatttgacgttcttcctcacaccaacccaacagtatacttgttt 12345885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 19323817 - 19323743
Alignment:
Q  137 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaattaaagg 211  Q
    ||||||| ||||||||| ||||||||||||||||| |||||||||||| ||||||| ||||||||  ||||||||    
T  19323817 caggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaaccatcgattttatttgattaaagg 19323743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 133 - 211
Target Start/End: Original strand, 19653967 - 19654045
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaattaaagg 211  Q
    |||||| ||||||||||||||||||||||| | | |||| ||||||||||||||||| |  |||||||| ||| |||||    
T  19653967 gagtcaagatctgttgacacctggtgtcaatggactcgttgacaccaaatcttaaccgtttattttatttaatcaaagg 19654045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 2512439 - 2512491
Alignment:
Q  137 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    ||||||| ||||||||||| ||||||||||||||| |||||||||| ||||||    
T  2512439 caggatccgttgacacctgatgtcaacgaattcgttgacaccaaatattaacc 2512491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 10171273 - 10171329
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    ||||||||||| ||||||||| |||||||||| |||||| |||||||||||| ||||    
T  10171273 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaacc 10171329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 26529567 - 26529511
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    ||||||||||| ||||||||| |||||||||| |||||| |||||||||||| ||||    
T  26529567 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaacc 26529511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 33435337 - 33435392
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaac 188  Q
    |||| |||||| ||||||||||||||| |||| |||||| ||||||||||||||||    
T  33435337 gagttaggatccgttgacacctggtgttaacggattcgttgacaccaaatcttaac 33435392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 8489334 - 8489284
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 183  Q
    ||||||||||| ||||||||| |||||||||||||||||  ||||||||||    
T  8489334 gagtcaggatccgttgacaccaggtgtcaacgaattcgttaacaccaaatc 8489284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 33436327 - 33436274
Alignment:
Q  134 agtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaa 187  Q
    |||||||||| ||||||||| | |||||||| |||||| |||||||||||||||    
T  33436327 agtcaggatccgttgacaccagatgtcaacggattcgttgacaccaaatcttaa 33436274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 10172020 - 10171964
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    |||| |||||| ||||||||| |||||||||| |||||| |||||||||||| ||||    
T  10172020 gagttaggatccgttgacaccaggtgtcaacgcattcgttgacaccaaatctcaacc 10171964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 186
Target Start/End: Complemental strand, 19311880 - 19311828
Alignment:
Q  134 agtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatctta 186  Q
    |||||||||  ||||||||| |||||||||| |||||| ||||||||||||||    
T  19311880 agtcaggattcgttgacaccaggtgtcaacggattcgttgacaccaaatctta 19311828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 19322992 - 19323048
Alignment:
Q  145 gttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 201  Q
    ||||||||| |||||||||| |||||| |||||||||||| | ||||| ||||||||    
T  19322992 gttgacaccaggtgtcaacggattcgttgacaccaaatctcatccatcaattttatt 19323048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 21133281 - 21133225
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    |||| |||||| |||||||||  |||| ||||||||||| |||||||||||||||||    
T  21133281 gagttaggatccgttgacaccatgtgttaacgaattcgttgacaccaaatcttaacc 21133225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 26528820 - 26528876
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    |||| |||||| ||||||||| |||||||||| |||||| |||||||||||| ||||    
T  26528820 gagttaggatccgttgacaccaggtgtcaacgcattcgttgacaccaaatctcaacc 26528876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 18227729 - 18227791
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccatt 196  Q
    ||||||||||| ||||||||| | |||||||| |||||| |||||||||||  |||||||||||    
T  18227729 gagtcaggatccgttgacaccag-tgtcaacggattcgttgacaccaaatcacaaccatccatt 18227791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 505534 - 505592
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccat 191  Q
    ||||||||||||||||||| | |||||||||  |||||| ||||||||||  |||||||    
T  505534 gagtcaggatctgttgacatcaggtgtcaacagattcgttgacaccaaattctaaccat 505592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 3623172 - 3623228
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    |||| |||||| ||||||| | ||||||||||||||| | |||||||||||| ||||    
T  3623172 gagttaggatccgttgacatcaggtgtcaacgaattctttgacaccaaatctcaacc 3623228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 8488466 - 8488522
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    |||| ||||||  |||||||| |||||||||| |||||| |||||||||||| ||||    
T  8488466 gagttaggatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaacc 8488522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 6e-44; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 133 - 287
Target Start/End: Complemental strand, 29559474 - 29559320
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaattaaaggtctataatcgttggttcaccg 232  Q
    |||| |||||||||||||||| ||||||||||||||||| |||||||||||| || ||||||||||||||||| |||||||| |||||||| |||||  |    
T  29559474 gagttaggatctgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaatcatccattttattcaatcaaaggtctgtaatcgtttgttcatgg 29559375  T
Q  233 aataaaattaaattgaaaacaaagcattattgtactatttcttttcttctgcaaa 287  Q
    |||||| |||||||||||||| |  ||||||| ||| ||||||||||||||||||    
T  29559374 aataaacttaaattgaaaacacattattattgcactctttcttttcttctgcaaa 29559320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 133 - 198
Target Start/End: Original strand, 1296377 - 1296442
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccatttt 198  Q
    ||||||||||| ||||||||| ||||||||||||||||| |||||||||||| ||||||| |||||    
T  1296377 gagtcaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaaccatcaatttt 1296442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 9276384 - 9276319
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccatttt 198  Q
    ||||||||||| ||||||||| ||||||||||||||||| |||||||||||| ||||||| |||||    
T  9276384 gagtcaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaaccatcaatttt 9276319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 15774205 - 15774273
Alignment:
Q  138 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaatt 206  Q
    |||||| |||||||||||||||||||||||| || |||||||||||| ||||||| |||||||| ||||    
T  15774205 aggatccgttgacacctggtgtcaacgaatttgttgacaccaaatctcaaccatcaattttatttaatt 15774273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 9540333 - 9540387
Alignment:
Q  137 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccat 191  Q
    ||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||    
T  9540333 caggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatcttaaccat 9540387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 22301919 - 22301866
Alignment:
Q  138 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccat 191  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||||||||||||    
T  22301919 aggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatcttaaccat 22301866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 1297177 - 1297109
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 201  Q
    |||| |||||| ||||||||| |||||||||| |||||| |||||||||||| ||||||| ||||||||    
T  1297177 gagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccatcaattttatt 1297109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 9275584 - 9275652
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 201  Q
    |||| |||||| ||||||||| |||||||||| |||||| |||||||||||| ||||||| ||||||||    
T  9275584 gagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccatcaattttatt 9275652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 24933838 - 24933898
Alignment:
Q  137 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattt 197  Q
    ||||||| ||||||||||||||||||||||||| | |||||||||||| |||||| |||||    
T  24933838 caggatccgttgacacctggtgtcaacgaattcattgacaccaaatctcaaccattcattt 24933898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 26752771 - 26752719
Alignment:
Q  139 ggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccat 191  Q
    ||||| ||||||||| ||||||||||||||||| |||| ||||||||||||||    
T  26752771 ggatccgttgacaccaggtgtcaacgaattcgttgacatcaaatcttaaccat 26752719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 29719448 - 29719508
Alignment:
Q  137 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattt 197  Q
    ||||||| ||||||||| |||||||||| |||||| |||||||||||| |||| |||||||    
T  29719448 caggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccctccattt 29719508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 29512369 - 29512420
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatct 184  Q
    |||||| |||| |||||||||||||||||||||||| || ||||||||||||    
T  29512369 gagtcatgatccgttgacacctggtgtcaacgaatttgttgacaccaaatct 29512420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 33512095 - 33512149
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaa 187  Q
    ||||||||||| |||||||||| |||||||||||||||| ||||| |||| ||||    
T  33512095 gagtcaggatccgttgacacctagtgtcaacgaattcgttgacactaaatattaa 33512149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 38361077 - 38361130
Alignment:
Q  145 gttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccatttt 198  Q
    ||||||| | ||||||||||||||||| |||||||||||| ||||||| |||||    
T  38361077 gttgacatcaggtgtcaacgaattcgttgacaccaaatctcaaccatcaatttt 38361130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 18174724 - 18174668
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    |||| |||||| ||||||| | ||||||||||||||||| |||||||||||| ||||    
T  18174724 gagttaggatccgttgacatcaggtgtcaacgaattcgttgacaccaaatctcaacc 18174668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 22560622 - 22560566
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    ||||||||||| ||||||| | |||||||||| |||||| |||||||||||| ||||    
T  22560622 gagtcaggatccgttgacatcaggtgtcaacggattcgttgacaccaaatctcaacc 22560566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 27177915 - 27177959
Alignment:
Q  138 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaat 182  Q
    |||||| ||||||||| ||||||||||||||||| ||||||||||    
T  27177915 aggatccgttgacaccaggtgtcaacgaattcgttgacaccaaat 27177959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 36237629 - 36237697
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 201  Q
    ||||||||||| ||||||||| |||||||||| |||| | |||||||||| | ||||||  ||||||||    
T  36237629 gagtcaggatccgttgacaccaggtgtcaacggattcattgacaccaaatttcaaccatttattttatt 36237697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 8541749 - 8541803
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaa 187  Q
    ||||||||||| ||||||| | ||| ||||||||||||| ||||| |||||||||    
T  8541749 gagtcaggatccgttgacatcaggtctcaacgaattcgttgacacaaaatcttaa 8541803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 11751123 - 11751073
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 183  Q
    |||| |||||| ||||||||| |||||||||||||||||  ||||||||||    
T  11751123 gagttaggatccgttgacaccaggtgtcaacgaattcgttaacaccaaatc 11751073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 18174097 - 18174147
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 183  Q
    |||| |||||| ||||||||| ||||| ||||||||||| |||||||||||    
T  18174097 gagttaggatccgttgacaccaggtgttaacgaattcgttgacaccaaatc 18174147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 22301192 - 22301242
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 183  Q
    ||||||||||| ||||||||| ||||||||||||| |||  ||||||||||    
T  22301192 gagtcaggatccgttgacaccaggtgtcaacgaatccgttaacaccaaatc 22301242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 23343778 - 23343828
Alignment:
Q  134 agtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatct 184  Q
    |||||||||||||||||||| | |||||||| |||||| |||| |||||||    
T  23343778 agtcaggatctgttgacaccagatgtcaacggattcgttgacatcaaatct 23343828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 23857078 - 23857028
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 183  Q
    |||| |||||| |||||||||||||||||||| ||| || |||||||||||    
T  23857078 gagttaggatccgttgacacctggtgtcaacggattggttgacaccaaatc 23857028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 11007238 - 11007287
Alignment:
Q  142 tctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccat 191  Q
    |||||||||||| |||||||||| |||||| ||||| |||||| ||||||    
T  11007238 tctgttgacaccaggtgtcaacggattcgttgacactaaatctcaaccat 11007287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 187
Target Start/End: Complemental strand, 16693015 - 16692974
Alignment:
Q  146 ttgacacctggtgtcaacgaattcgtcgacaccaaatcttaa 187  Q
    |||||||| |||||||||| |||||| |||||||||||||||    
T  16693015 ttgacaccaggtgtcaacggattcgttgacaccaaatcttaa 16692974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 11750255 - 11750311
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    |||| ||||||  |||||||| |||||||||| |||||| |||||||||||| ||||    
T  11750255 gagttaggatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaacc 11750311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 12725669 - 12725605
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattt 197  Q
    |||| |||||| ||||||||| |||||||||| ||| || |||||||||||  |||||| |||||    
T  12725669 gagttaggatccgttgacaccaggtgtcaacggatttgttgacaccaaatcccaaccattcattt 12725605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 18820430 - 18820494
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattt 197  Q
    ||||| |||||  |||||| | |||||||||| |||||| ||||||||||| ||||| |||||||    
T  18820430 gagtcgggatccattgacatcaggtgtcaacggattcgttgacaccaaatcctaaccttccattt 18820494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 19918776 - 19918720
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    ||||||||||| ||||||| ||| |||||||| |||||| |||| ||||||| ||||    
T  19918776 gagtcaggatccgttgacatctgatgtcaacggattcgttgacatcaaatctcaacc 19918720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 42)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 133 - 290
Target Start/End: Complemental strand, 16664180 - 16664023
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaattaaaggtctataatcgttggttcaccg 232  Q
    |||| |||||| ||||||||| |||||||||| || ||| ||||| |||||| ||||||| ||| || | |||  || | ||||||| ||| |||||||     
T  16664180 gagttaggatccgttgacaccaggtgtcaacggatccgttgacactaaatctcaaccatctattgtaataaatccaatggctataattgtttgttcacca 16664081  T
Q  233 aataaaattaaattgaaaacaaagcattattgtactatttcttttcttctgcaaaatt 290  Q
    |||||| |||||||||||||| || ||||||||||| |||||||||||||||||||||    
T  16664080 aataaacttaaattgaaaacatagtattattgtactctttcttttcttctgcaaaatt 16664023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 133 - 290
Target Start/End: Complemental strand, 17638540 - 17638383
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaattaaaggtctataatcgttggttcaccg 232  Q
    |||| |||||| ||||||||| |||||||||| || ||| ||||| |||||| ||||||| ||| || | |||  || | ||||||| ||| |||||||     
T  17638540 gagttaggatccgttgacaccaggtgtcaacggatccgttgacactaaatctcaaccatctattgtaataaatccaatggctataattgtttgttcacca 17638441  T
Q  233 aataaaattaaattgaaaacaaagcattattgtactatttcttttcttctgcaaaatt 290  Q
    |||||| |||||||||||||| || ||||||||||| |||||||||||||||||||||    
T  17638440 aataaacttaaattgaaaacatagtattattgtactctttcttttcttctgcaaaatt 17638383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 18829590 - 18829668
Alignment:
Q  1 aaaataatcaaatgataacctgtggacatccaaggctgaataatataaaaagacttgctacatacaaaagccattactc 79  Q
    ||||||||||||||||||| |||| |||||||||||| ||||||||||| |||||||||| ||||||||||||||||||    
T  18829590 aaaataatcaaatgataacatgtgaacatccaaggctaaataatataaatagacttgctatatacaaaagccattactc 18829668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 177 - 410
Target Start/End: Original strand, 22319973 - 22320201
Alignment:
Q  177 ccaaatcttaaccatccattttattcaattaaaggtctataatcgttggttcaccgaataaaattaaattgaaaacaaagcattattgtactatttcttt 276  Q
    ||||||||  |||||||||| ||||| || ||||| ||||||||||| ||||||| |||||| |||||||||||||| || | ||||||||| ||| |||    
T  22319973 ccaaatctcgaccatccattgtattcgatcaaaggcctataatcgtttgttcaccaaataaacttaaattgaaaacacagtaatattgtactcttttttt 22320072  T
Q  277 tctt----ctgcaaaatttgacgttcttcttcacaccaacccaacagtatatttgtttcgatcgcagctcgtcaccaagatatttcttatttatgtcaaa 372  Q
    | ||     |||||| |||| |  ||||| ||| ||||| |||||| ||| |||      |  ||| |||||   ||||||||||| |||||||||||||    
T  22320073 tttttttaatgcaaattttgtcactcttcctcaaaccaatccaacaatattttt------aatgcaactcgt---caagatatttcctatttatgtcaaa 22320163  T
Q  373 tttattaaattgatcgcaataggagtatgatagtgaat 410  Q
    |||||| |||| |||||||| |||||||| ||||||||    
T  22320164 tttattcaatttatcgcaattggagtatggtagtgaat 22320201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 247 - 410
Target Start/End: Original strand, 3163686 - 3163845
Alignment:
Q  247 gaaaacaaagcattattgtactatttcttttcttctgcaaaatttgacgttcttcttcacaccaacccaacagtatatttgtttcgatcgcagctcgtca 346  Q
    ||||||| || ||||||||||| |||||||| || ||||||||||| |  ||||| ||| ||||| |||||| |||  |||||| ||| ||| ||| |||    
T  3163686 gaaaacacagtattattgtactctttctttt-ttatgcaaaatttgtcactcttcctcaaaccaatccaacaatattgttgtttggattgcaactcatca 3163784  T
Q  347 ccaagatatttcttatttatgtcaaatttattaaattgatcgcaataggagtatgatagtgaat 410  Q
       | ||||||| ||||||||||||||||||| |||| ||| |||| |||||||||||||||||    
T  3163785 ---atatatttcctatttatgtcaaatttattcaatttatcacaattggagtatgatagtgaat 3163845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 44472409 - 44472350
Alignment:
Q  1 aaaataatcaaatgataacctgtggacatccaaggctgaataatataaaaagacttgcta 60  Q
    ||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||    
T  44472409 aaaataatcaaatgataacctatgaacatccaaggctaaataatataaaaagacttgcta 44472350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 22022508 - 22022449
Alignment:
Q  1 aaaataatcaaatgataacctgtggacatccaaggctgaataatataaaaagacttgcta 60  Q
    |||||||||||||| ||||||||| | |||||||||| ||||||||||||||||||||||    
T  22022508 aaaataatcaaatgctaacctgtgaagatccaaggctaaataatataaaaagacttgcta 22022449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 1417610 - 1417663
Alignment:
Q  138 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccat 191  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||||||||||||    
T  1417610 aggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatcttaaccat 1417663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 25343294 - 25343229
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccatttt 198  Q
    ||||||||||| ||||||||| |||||||| |||||||| |||||||||||| ||||||| |||||    
T  25343294 gagtcaggatccgttgacaccaggtgtcaatgaattcgttgacaccaaatctcaaccatcaatttt 25343229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 38226025 - 38225972
Alignment:
Q  138 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccat 191  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||||||||||||    
T  38226025 aggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatcttaaccat 38225972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 25342494 - 25342562
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 201  Q
    |||| |||||| ||||||||| |||||||||| |||||| |||||||||||| ||||||| ||||||||    
T  25342494 gagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccatcaattttatt 25342562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 25343300 - 25343368
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 201  Q
    |||| |||||| ||||||||| |||||||||| |||||| |||||||||||| ||||||| ||||||||    
T  25343300 gagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccatcaattttatt 25343368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 197
Target Start/End: Original strand, 7668480 - 7668543
Alignment:
Q  134 agtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattt 197  Q
    |||||||||| ||||||||| |||||||||| |||||| |||||||||||| |||||| |||||    
T  7668480 agtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccattcattt 7668543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 46428184 - 46428243
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatc 192  Q
    ||||||||||| ||||||||| |||||||||| |||||| |||||||||||| |||||||    
T  46428184 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccatc 46428243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 133 - 211
Target Start/End: Original strand, 26636100 - 26636178
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaattaaagg 211  Q
    ||||||||||| ||||||||| |||||||||| |||||| |||||||||||| |||| | |||| |||| ||| |||||    
T  26636100 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgtacattatatttaatcaaagg 26636178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 36378809 - 36378858
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaat 182  Q
    |||||||||||||||||||||||||||| ||| |||||| ||||||||||    
T  36378809 gagtcaggatctgttgacacctggtgtcgacggattcgttgacaccaaat 36378858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 27948443 - 27948499
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    |||| |||||| ||||||||| ||||||||||||||||| |||||||||||| ||||    
T  27948443 gagttaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaacc 27948499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 30660590 - 30660658
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 201  Q
    |||| |||||| ||||||||| |||||||||| |||||| |||||||||||| | ||||| ||||||||    
T  30660590 gagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcatccatcaattttatt 30660658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 37950522 - 37950454
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 201  Q
    |||| |||||| ||||||||| |||||||||| |||||| |||||||||||| | ||||| ||||||||    
T  37950522 gagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcatccatcaattttatt 37950454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 45099948 - 45099892
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    ||||||||||| ||||||||| |||||||||| |||||| |||||||||| ||||||    
T  45099948 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaattttaacc 45099892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 253
Target Start/End: Original strand, 3163585 - 3163660
Alignment:
Q  178 caaatcttaaccatccattttattcaattaaaggtctataatcgttggttcaccgaataaaattaaattgaaaaca 253  Q
    ||||| || |||||||||| ||||  || ||||| ||||||||| | |||||||||||||| ||||||||||||||    
T  3163585 caaattttgaccatccattgtatttgatcaaaggcctataatcgattgttcaccgaataaatttaaattgaaaaca 3163660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 25599019 - 25599070
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatct 184  Q
    ||||||||||| ||||||||| |||||||||| |||||| ||||||||||||    
T  25599019 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 25599070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 184
Target Start/End: Complemental strand, 46428872 - 46428821
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatct 184  Q
    ||||||||||| ||||||||| ||||||||||||||||| |||| |||||||    
T  46428872 gagtcaggatccgttgacaccaggtgtcaacgaattcgttgacatcaaatct 46428821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 13785644 - 13785594
Alignment:
Q  137 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaa 187  Q
    ||||||| ||||||||| |||||||||| |||||| |||||||||||||||    
T  13785644 caggatccgttgacaccaggtgtcaacggattcgttgacaccaaatcttaa 13785594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 30661506 - 30661432
Alignment:
Q  137 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaattaaagg 211  Q
    ||||||| ||||||||| |||||||||| |||||| |||||||||||| |||| |  |||||||| ||| |||||    
T  30661506 caggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgttgattttatttaatcaaagg 30661432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 37949606 - 37949680
Alignment:
Q  137 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaattaaagg 211  Q
    ||||||| ||||||||| |||||||||| |||||| |||||||||||| |||| |  |||||||| ||| |||||    
T  37949606 caggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgttgattttatttaatcaaagg 37949680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 3029248 - 3029203
Alignment:
Q  138 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 183  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||||    
T  3029248 aggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 3029203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 3772581 - 3772516
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccatttt 198  Q
    |||| |||||| ||||||||| |||||||||| |||||| |||||||||||| |||| || |||||    
T  3772581 gagttaggatccgttgacaccaggtgtcaacgtattcgttgacaccaaatctcaaccgtctatttt 3772516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 21497035 - 21496982
Alignment:
Q  136 tcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    |||||||| ||||||| | ||||||||||||||||| |||||||||||| ||||    
T  21497035 tcaggatccgttgacaacaggtgtcaacgaattcgttgacaccaaatctcaacc 21496982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 23889861 - 23889812
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaat 182  Q
    |||||| |||| |||| |||||||||||||||||||||| ||||||||||    
T  23889861 gagtcaagatccgttggcacctggtgtcaacgaattcgttgacaccaaat 23889812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 18977823 - 18977759
Alignment:
Q  134 agtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccatttt 198  Q
    ||||||||||  |||||||| |||||||||| ||||||  ||||||||||| ||||||| |||||    
T  18977823 agtcaggatccattgacaccaggtgtcaacggattcgttaacaccaaatctcaaccatcaatttt 18977759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 210
Target Start/End: Complemental strand, 24389666 - 24389594
Alignment:
Q  138 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaattaaag 210  Q
    |||||| ||||||||| |||||||||| |||| | |||||||||||| ||||||  |||||||| ||| ||||    
T  24389666 aggatccgttgacaccaggtgtcaacggattcattgacaccaaatctcaaccatttattttatttaatcaaag 24389594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 40273557 - 40273613
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    |||| |||||| ||||||||| |||||||| |||||||| |||||||||||| ||||    
T  40273557 gagttaggatccgttgacaccaggtgtcaatgaattcgttgacaccaaatctcaacc 40273613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 26636914 - 26636859
Alignment:
Q  134 agtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    |||||||||| ||||||||  |||||||||| |||||| |||||||||||| ||||    
T  26636914 agtcaggatccgttgacacaaggtgtcaacggattcgttgacaccaaatctcaacc 26636859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 47719746 - 47719671
Alignment:
Q  146 ttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaat-taaaggtctataatc 220  Q
    |||||||| |||||||||| |||||| ||||||||||||||| | | ||||| ||| ||| |||||||| ||||||    
T  47719746 ttgacaccaggtgtcaacggattcgttgacaccaaatcttaaacgttcatttaatttaatctaaaggtcaataatc 47719671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 19067638 - 19067712
Alignment:
Q  137 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaattaaagg 211  Q
    ||||||| |||||||||  ||||||||| |||||| |||||||||||| |||| |  |||||||| ||| |||||    
T  19067638 caggatccgttgacaccacgtgtcaacggattcgttgacaccaaatctcaaccgttgattttatttaatcaaagg 19067712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 3027987 - 3028032
Alignment:
Q  149 acacctggtgtcaacgaattcgtcgacaccaaatcttaaccatcca 194  Q
    ||||| ||||||||||||||||| |||||||||||| |||| ||||    
T  3027987 acaccaggtgtcaacgaattcgttgacaccaaatctcaaccgtcca 3028032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 5930525 - 5930558
Alignment:
Q  159 tcaacgaattcgtcgacaccaaatcttaaccatc 192  Q
    ||||||||||||| ||||||||||||||||||||    
T  5930525 tcaacgaattcgttgacaccaaatcttaaccatc 5930558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 187
Target Start/End: Complemental strand, 23901136 - 23901095
Alignment:
Q  146 ttgacacctggtgtcaacgaattcgtcgacaccaaatcttaa 187  Q
    |||||||| ||||||||||||||||| ||||| |||||||||    
T  23901136 ttgacaccaggtgtcaacgaattcgttgacactaaatcttaa 23901095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 185
Target Start/End: Complemental strand, 43065164 - 43065119
Alignment:
Q  140 gatctgttgacacctggtgtcaacgaattcgtcgacaccaaatctt 185  Q
    |||| ||||||||| |||||||||| |||||| |||||||||||||    
T  43065164 gatccgttgacaccaggtgtcaacggattcgttgacaccaaatctt 43065119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 45099136 - 45099185
Alignment:
Q  134 agtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 183  Q
    |||||||||| ||||||| | |||||||||||||||||  ||||||||||    
T  45099136 agtcaggatccgttgacatcaggtgtcaacgaattcgttaacaccaaatc 45099185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 3688385 - 3688449
Alignment:
Q  137 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 201  Q
    ||||||| ||||||||| | | |||||| |||||| |||||||||||||| ||||  ||||||||    
T  3688385 caggatccgttgacaccagatatcaacggattcgttgacaccaaatcttatccatttattttatt 3688449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 6507990 - 6508049
Alignment:
Q  1 aaaataatcaaatgataacctgtggacatccaaggctgaataatataaaaagacttgcta 60  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  6507990 aaaataatcaaatgataacctgtgaacatccaaggctaaataatataaaaagacttgcta 6508049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 136 - 277
Target Start/End: Complemental strand, 7842581 - 7842440
Alignment:
Q  136 tcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaattaaaggtctataatcgttggttcaccgaat 235  Q
    ||||||||  |||||| | ||||||||||||||||| |||||||||||| ||||||| |||| ||| |||  || | |||||||  || || ||||||||    
T  7842581 tcaggatccattgacatcaggtgtcaacgaattcgttgacaccaaatctcaaccatctatttcattaaatccaatggctataattatttgtacaccgaat 7842482  T
Q  236 aaaattaaattgaaaacaaagcattattgtactatttctttt 277  Q
    ||| ||||||||||| || |  ||||||||||| ||||||||    
T  7842481 aaacttaaattgaaagcacaatattattgtactctttctttt 7842440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 133 - 211
Target Start/End: Original strand, 8247694 - 8247772
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaattaaagg 211  Q
    ||||||||||| |||||||||||||||||||| |||||| ||||| ||||||||||| || |||||||| ||| |||||    
T  8247694 gagtcaggatccgttgacacctggtgtcaacggattcgttgacacaaaatcttaaccgtctattttatttaatcaaagg 8247772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 47785854 - 47785795
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatc 192  Q
    ||||||||||||||||||||| |||||||||| |||||| |||||||||||| |||||||    
T  47785854 gagtcaggatctgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccatc 47785795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 142574 - 142517
Alignment:
Q  138 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccat 195  Q
    |||||| ||||||||| ||||||||||||||| | |||||||||||||||||||||||    
T  142574 aggatccgttgacaccgggtgtcaacgaattcattgacaccaaatcttaaccatccat 142517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 8248575 - 8248507
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 201  Q
    ||||||||||| ||||||||| | |||||||| |||||| ||||||||||||||||| || ||||||||    
T  8248575 gagtcaggatccgttgacaccagatgtcaacggattcgttgacaccaaatcttaaccgtctattttatt 8248507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 8265365 - 8265437
Alignment:
Q  139 ggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaattaaagg 211  Q
    ||||| |||||||||||||||||||| |||||| ||||| ||||||||||| || |||||||| ||| |||||    
T  8265365 ggatccgttgacacctggtgtcaacggattcgttgacacaaaatcttaaccgtctattttatttaatcaaagg 8265437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 8266240 - 8266172
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 201  Q
    ||||||||||| ||||||||| | |||||||| |||||| ||||||||||||||||| || ||||||||    
T  8266240 gagtcaggatccgttgacaccagatgtcaacggattcgttgacaccaaatcttaaccgtctattttatt 8266172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 24374787 - 24374851
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattt 197  Q
    ||||||||||| ||||||||| | ||||||||||||||| |||||||||||| |||| |||||||    
T  24374787 gagtcaggatccgttgacaccagctgtcaacgaattcgttgacaccaaatctcaaccttccattt 24374851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 19080387 - 19080447
Alignment:
Q  137 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattt 197  Q
    ||||||||||||||||| |||||||||| |||||| |||||||||| | |||||| |||||    
T  19080387 caggatctgttgacaccaggtgtcaacggattcgttgacaccaaatttcaaccattcattt 19080447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 26147087 - 26147031
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    |||| |||||| ||||||||| ||||||||||||||||| |||||||||||| ||||    
T  26147087 gagttaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaacc 26147031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 189
Target Start/End: Original strand, 11938714 - 11938765
Alignment:
Q  138 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    |||||||||| ||||| ||||||||||||||||| |||||||||||| ||||    
T  11938714 aggatctgttcacaccaggtgtcaacgaattcgttgacaccaaatctcaacc 11938765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 598523 - 598573
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 183  Q
    ||||||||||||||||||||| | |||||||||||||||  ||||||||||    
T  598523 gagtcaggatctgttgacaccagatgtcaacgaattcgttaacaccaaatc 598573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 599351 - 599305
Alignment:
Q  138 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatct 184  Q
    |||||| |||||||||||||||||||| |||||| ||||||||||||    
T  599351 aggatccgttgacacctggtgtcaacggattcgttgacaccaaatct 599305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 191
Target Start/End: Complemental strand, 31329772 - 31329714
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccat 191  Q
    ||||||||||| ||||||||| |||||||||| ||||||  |||||||||| |||||||    
T  31329772 gagtcaggatccgttgacaccaggtgtcaacggattcgttaacaccaaatcctaaccat 31329714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 7841791 - 7841857
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 201  Q
    |||| |||||| |||||||  |||||||||||||||||| |||||||||||| ||| ||| ||||||||    
T  7841791 gagttaggatccgttgaca--tggtgtcaacgaattcgttgacaccaaatctcaactatctattttatt 7841857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 9365167 - 9365224
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacca 190  Q
    ||||||||||| ||| ||||| |||||||||||||| || |||||||||||| |||||    
T  9365167 gagtcaggatccgttaacaccaggtgtcaacgaatttgttgacaccaaatctcaacca 9365224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 20774235 - 20774179
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    |||||||||||  |||||||| |||||||||| |||||| |||||||||||| ||||    
T  20774235 gagtcaggatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaacc 20774179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 24158875 - 24158819
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    |||||||||||  |||||||| |||||||||  |||||| |||||||||||||||||    
T  24158875 gagtcaggatccattgacaccaggtgtcaacagattcgttgacaccaaatcttaacc 24158819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 30573764 - 30573708
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    |||||||||||  |||||||| |||||||||| |||||| |||||||||||| ||||    
T  30573764 gagtcaggatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaacc 30573708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 40495093 - 40495141
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaa 181  Q
    ||||||||||| ||||||||| ||||||||| ||||||| |||||||||    
T  40495093 gagtcaggatccgttgacaccaggtgtcaacaaattcgttgacaccaaa 40495141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 47688534 - 47688478
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    |||| |||||| ||||||||| |||||||||| |||||| |||||||||||| ||||    
T  47688534 gagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaacc 47688478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 56262480 - 56262532
Alignment:
Q  137 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    ||||||| ||||||||| |||||||| |||||||| |||||||||||| ||||    
T  56262480 caggatccgttgacaccaggtgtcaatgaattcgttgacaccaaatctcaacc 56262532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 1866346 - 1866400
Alignment:
Q  138 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatc 192  Q
    |||||| ||||||||  |||||||| |||||||| |||||||||||| |||||||    
T  1866346 aggatccgttgacactaggtgtcaatgaattcgttgacaccaaatctcaaccatc 1866400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 44792691 - 44792641
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 183  Q
    |||||||||||  |||||||| |||||||||||||||||  ||||||||||    
T  44792691 gagtcaggatccattgacaccaggtgtcaacgaattcgttaacaccaaatc 44792641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 47687907 - 47687957
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 183  Q
    |||| |||||| ||||||||| ||||| ||||||||||| |||||||||||    
T  47687907 gagttaggatccgttgacaccaggtgttaacgaattcgttgacaccaaatc 47687957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 55976176 - 55976218
Alignment:
Q  145 gttgacacctggtgtcaacgaattcgtcgacaccaaatcttaa 187  Q
    ||||||||| |||||||||| |||||| |||||||||||||||    
T  55976176 gttgacaccaggtgtcaacggattcgttgacaccaaatcttaa 55976218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 44469491 - 44469540
Alignment:
Q  134 agtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 183  Q
    ||||| |||| | ||||||| ||||||||||||||||| |||||||||||    
T  44469491 agtcatgatccgatgacaccaggtgtcaacgaattcgttgacaccaaatc 44469540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 55001488 - 55001439
Alignment:
Q  140 gatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    |||| ||||||||| |||||||||| |||||| ||||| |||||||||||    
T  55001488 gatccgttgacaccaggtgtcaacggattcgttgacactaaatcttaacc 55001439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 55976995 - 55976922
Alignment:
Q  148 gacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaat-taaaggtctataatc 220  Q
    |||||| |||||||||| |||||| ||||||||||||||| | | ||||| ||| ||| |||||||| ||||||    
T  55976995 gacaccaggtgtcaacggattcgttgacaccaaatcttaaacgttcatttaatttaatctaaaggtcaataatc 55976922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 1465318 - 1465382
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattt 197  Q
    ||||||||||| ||||||||| |||||||||  |||| | |||| ||||||  ||||||||||||    
T  1465318 gagtcaggatccgttgacaccaggtgtcaacagattcattgacatcaaatcacaaccatccattt 1465382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 16902903 - 16902943
Alignment:
Q  158 gtcaacgaattcgtcgacaccaaatcttaaccatccatttt 198  Q
    |||||||||||||| |||||||||||| ||||||| |||||    
T  16902903 gtcaacgaattcgttgacaccaaatctcaaccatcaatttt 16902943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 16903686 - 16903642
Alignment:
Q  145 gttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    ||||||||| |||||||||| |||||| |||||||||||| ||||    
T  16903686 gttgacaccaggtgtcaacggattcgttgacaccaaatctcaacc 16903642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 45081458 - 45081390
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 201  Q
    ||||||||||| |||||||||| ||||||||| |||||| |||||||||||| ||||||  ||||||||    
T  45081458 gagtcaggatccgttgacacctagtgtcaacggattcgttgacaccaaatctcaaccatttattttatt 45081390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 48648201 - 48648257
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    ||||||||||| ||||||||| |||||||||| |||||| |||||||||||||||||    
T  48648201 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatcttaacc 48648257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 14871151 - 14871202
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatct 184  Q
    ||||||||||| ||||||||| ||||||||||||||||| ||||||||||||    
T  14871151 gagtcaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatct 14871202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 13477055 - 13477113
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccat 191  Q
    ||||||||||| ||||||||| ||||||||||||||| | ||||||||||| |||||||    
T  13477055 gagtcaggatccgttgacaccaggtgtcaacgaattcattgacaccaaatcctaaccat 13477113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 37520614 - 37520548
Alignment:
Q  135 gtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 201  Q
    ||||||||| ||||| ||| ||||||||||||||||| |||||||||||| ||||||| || |||||    
T  37520614 gtcaggatccgttgataccaggtgtcaacgaattcgttgacaccaaatctcaaccatcaatcttatt 37520548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 20213586 - 20213530
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    ||||||||||| ||||||||| |||||| |||||||||| ||||||||||| |||||    
T  20213586 gagtcaggatccgttgacaccaggtgtcgacgaattcgttgacaccaaatcctaacc 20213530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 46150784 - 46150716
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttatt 201  Q
    ||||||||||| ||||||||  |||||||||| |||||| |||||||||||| ||||||  ||||||||    
T  46150784 gagtcaggatccgttgacactaggtgtcaacggattcgttgacaccaaatctcaaccatttattttatt 46150716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 184
Target Start/End: Complemental strand, 37988273 - 37988222
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatct 184  Q
    |||||||||||  |||||||| ||||||||||||||||| ||||||||||||    
T  37988273 gagtcaggatccattgacaccaggtgtcaacgaattcgttgacaccaaatct 37988222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 51827548 - 51827493
Alignment:
Q  134 agtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    ||||| |||| |||||||||||||||||||| |||||| | |||||||||||||||    
T  51827548 agtcaagatccgttgacacctggtgtcaacggattcgttgtcaccaaatcttaacc 51827493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 10847289 - 10847327
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgt 171  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  10847289 gagtcaggatccgttgacacctggtgtcaacgaattcgt 10847327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 20212978 - 20213028
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 183  Q
    ||||||| ||| ||||||||| ||||||||||||||||| |||||||||||    
T  20212978 gagtcagaatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 20213028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 21727580 - 21727530
Alignment:
Q  137 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaa 187  Q
    ||||||| ||||||||| |||||||||| |||||| |||||||||||||||    
T  21727580 caggatccgttgacaccaggtgtcaacggattcgttgacaccaaatcttaa 21727530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 8949938 - 8949995
Alignment:
Q  138 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccat 195  Q
    |||||| |||||||||  |||||||||||| ||| ||||| |||||||||||||||||    
T  8949938 aggatccgttgacaccatgtgtcaacgaatccgttgacacaaaatcttaaccatccat 8949995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 17603171 - 17603220
Alignment:
Q  138 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaa 187  Q
    |||||| ||||||||| |||||||||| |||||| |||||||||||||||    
T  17603171 aggatccgttgacaccaggtgtcaacggattcgttgacaccaaatcttaa 17603220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 52266508 - 52266443
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccatttt 198  Q
    ||||||||||| ||| ||||| ||||| ||||||||||| |||||||||||| |||| || |||||    
T  52266508 gagtcaggatccgttaacaccaggtgttaacgaattcgttgacaccaaatctcaaccgtctatttt 52266443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 981677 - 981721
Alignment:
Q  145 gttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    ||||||||| ||||||||||||||||| |||||||||||| ||||    
T  981677 gttgacaccaggtgtcaacgaattcgttgacaccaaatctcaacc 981721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 27082774 - 27082830
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    |||||||||||  |||||||  ||||||||||||||||| ||||||||||| |||||    
T  27082774 gagtcaggatccattgacactaggtgtcaacgaattcgttgacaccaaatcctaacc 27082830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 31974654 - 31974714
Alignment:
Q  138 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccatttt 198  Q
    |||||| |||||||||  ||||||||| |||||| |||||||||||| ||||||| |||||    
T  31974654 aggatccgttgacaccaagtgtcaacggattcgttgacaccaaatctcaaccatctatttt 31974714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 48507083 - 48507031
Alignment:
Q  137 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    ||||||| ||||||||| |||||||| |||||||| |||||||||||| ||||    
T  48507083 caggatccgttgacaccaggtgtcaatgaattcgttgacaccaaatctcaacc 48507031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 48764475 - 48764531
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    |||||||||||  |||||| | ||||||||||||||||| |||||||||||| ||||    
T  48764475 gagtcaggatccattgacatcaggtgtcaacgaattcgttgacaccaaatctcaacc 48764531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 189
Target Start/End: Original strand, 13349418 - 13349469
Alignment:
Q  138 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    |||||| ||||| ||| ||||||||| ||||||| |||||||||||||||||    
T  13349418 aggatcggttgataccaggtgtcaacaaattcgttgacaccaaatcttaacc 13349469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 189
Target Start/End: Complemental strand, 13477820 - 13477777
Alignment:
Q  146 ttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    |||||||| ||||||||||||||||| |||||||||||| ||||    
T  13477820 ttgacaccaggtgtcaacgaattcgttgacaccaaatctcaacc 13477777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 48765124 - 48765069
Alignment:
Q  134 agtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    ||||||||||  |||||||| |||||||| | |||||| |||||||||||||||||    
T  48765124 agtcaggatccattgacaccaggtgtcaatggattcgttgacaccaaatcttaacc 48765069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 265152 - 265102
Alignment:
Q  134 agtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatct 184  Q
    ||||| |||| ||||||||| |||||||||| |||||| ||||||||||||    
T  265152 agtcatgatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 265102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 220
Target Start/End: Complemental strand, 17604002 - 17603928
Alignment:
Q  147 tgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaat-taaaggtctataatc 220  Q
    ||||||| |||||||||| |||||| ||||||||||||||| | | ||||| ||| ||| |||||||| ||||||    
T  17604002 tgacaccaggtgtcaacggattcgttgacaccaaatcttaaacgttcatttaatttaatctaaaggtcaataatc 17603928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 23706836 - 23706786
Alignment:
Q  155 ggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaat 205  Q
    |||||||||  |||||| |||||||||||| ||||||| ||||||||||||    
T  23706836 ggtgtcaacatattcgttgacaccaaatctcaaccatcaattttattcaat 23706786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 23725292 - 23725242
Alignment:
Q  155 ggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaat 205  Q
    |||||||||  |||||| |||||||||||| ||||||| ||||||||||||    
T  23725292 ggtgtcaacatattcgttgacaccaaatctcaaccatcaattttattcaat 23725242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 23743748 - 23743698
Alignment:
Q  155 ggtgtcaacgaattcgtcgacaccaaatcttaaccatccattttattcaat 205  Q
    |||||||||  |||||| |||||||||||| ||||||| ||||||||||||    
T  23743748 ggtgtcaacatattcgttgacaccaaatctcaaccatcaattttattcaat 23743698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 33276890 - 33276940
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 183  Q
    ||||||||||||||| ||| |||||||||| | |||||| |||||||||||    
T  33276890 gagtcaggatctgttaacatctggtgtcaatggattcgttgacaccaaatc 33276940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 33277559 - 33277509
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 183  Q
    ||||||| ||| ||||||||| |||||||||||||||||  ||||||||||    
T  33277559 gagtcagaatccgttgacaccaggtgtcaacgaattcgttaacaccaaatc 33277509  T

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Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 44029824 - 44029786
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgt 171  Q
    ||||||||||| ||||||| |||||||||||||||||||    
T  44029824 gagtcaggatccgttgacatctggtgtcaacgaattcgt 44029786  T

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Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 48413317 - 48413367
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 183  Q
    |||| ||||| |||||||||| |||||||||| |||||| |||||||||||    
T  48413317 gagtaaggatttgttgacaccaggtgtcaacggattcgttgacaccaaatc 48413367  T

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Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 189
Target Start/End: Complemental strand, 48649226 - 48649172
Alignment:
Q  135 gtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    |||||||||  |||||||| |||||||||  |||||| |||||||||||||||||    
T  48649226 gtcaggatccattgacaccaggtgtcaacagattcgttgacaccaaatcttaacc 48649172  T

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Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 48506443 - 48506491
Alignment:
Q  140 gatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    |||| |||||||| |||||||||||||||||| |||||||||||| ||||    
T  48506443 gatccgttgacac-tggtgtcaacgaattcgttgacaccaaatctcaacc 48506491  T

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Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 52281764 - 52281821
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacca 190  Q
    ||||||| ||| ||||| |||||||||||||| |||||| ||||||| |||| |||||    
T  52281764 gagtcagaatccgttgatacctggtgtcaacggattcgttgacaccagatctcaacca 52281821  T

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Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 52605538 - 52605501
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcg 170  Q
    ||||||||||| ||||||||| ||||||||||||||||    
T  52605538 gagtcaggatccgttgacaccaggtgtcaacgaattcg 52605501  T

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Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 54458715 - 54458670
Alignment:
Q  138 aggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 183  Q
    |||||| |||||||||||||||||||| ||| || |||||||||||    
T  54458715 aggatccgttgacacctggtgtcaacggattggttgacaccaaatc 54458670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 41458031 - 41458087
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    ||||||||||  ||||| ||| |||||||||| |||||| |||||||||||| ||||    
T  41458031 gagtcaggattcgttgataccaggtgtcaacggattcgttgacaccaaatctcaacc 41458087  T

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Target: scaffold0176 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 26589 - 26652
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccatt 196  Q
    ||||||||||| ||||||||| |||||||||| |||||| |||||||||||  |||||||||||    
T  26589 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatcacaaccatccatt 26652  T

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Target: scaffold0085 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 15900 - 15848
Alignment:
Q  146 ttgacacctggtgtcaacgaattcgtcgacaccaaatcttaaccatccatttt 198  Q
    |||||||| ||||||||||||||||| |||||||||||| ||||||| |||||    
T  15900 ttgacaccaggtgtcaacgaattcgttgacaccaaatctcaaccatcaatttt 15848  T

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Target: scaffold0085; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 15020 - 15076
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    ||||||||||| |||||||||| ||||||||| |||| | |||||||||||| ||||    
T  15020 gagtcaggatccgttgacacctagtgtcaacggattcattgacaccaaatctcaacc 15076  T

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Target: scaffold0085; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 189
Target Start/End: Original strand, 15080 - 15135
Alignment:
Q  134 agtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    |||||||||| |||||||||| ||||||||| |||| | |||||||||||| ||||    
T  15080 agtcaggatccgttgacacctagtgtcaacggattcattgacaccaaatctcaacc 15135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 428956 - 428900
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatcttaacc 189  Q
    ||||||||||| ||||||||| ||| ||||||||||||| |||||||||||| ||||    
T  428956 gagtcaggatccgttgacacccggtatcaacgaattcgttgacaccaaatctcaacc 428900  T

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Target: scaffold1207 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 1588 - 1634
Alignment:
Q  137 caggatctgttgacacctggtgtcaacgaattcgtcgacaccaaatc 183  Q
    ||||||| ||||||||| ||||||||||||||||| |||||||||||    
T  1588 caggatcggttgacaccaggtgtcaacgaattcgttgacaccaaatc 1634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 6939 - 6891
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaa 181  Q
    ||||||||||| ||||||||| ||||||||| ||||||| |||||||||    
T  6939 gagtcaggatccgttgacaccaggtgtcaacaaattcgttgacaccaaa 6891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 5434 - 5385
Alignment:
Q  133 gagtcaggatctgttgacacctggtgtcaacgaattcgtcgacaccaaat 182  Q
    ||||||||||| ||||||||| |||||||||| ||| || ||||||||||    
T  5434 gagtcaggatccgttgacaccaggtgtcaacggatttgttgacaccaaat 5385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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