View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21267_low_6 (Length: 328)
Name: NF21267_low_6
Description: NF21267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21267_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 32)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 8576786 - 8576475
Alignment:
| Q |
1 |
aaacgctttgttgctgaagaaatatcatctgtgattctctcaaagatgcgagagattgcagaggcttttctgcagacacctgttaagaatgcagtgattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8576786 |
aaacgctttgttgctgaagaaatatcatctgtgattctctcaaagatgcgagagattgcagaggcttttctgcagacacctgttaagaatgcagtgattt |
8576687 |
T |
|
| Q |
101 |
ctgtgcctgcttattttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgcagataatcaatgaaccgactgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8576686 |
ctgtgcctgcttattttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgcagataatcaatgaaccgactgc |
8576587 |
T |
|
| Q |
201 |
ggcggctcttgcgtatggccttcaaaagagagctaattgtgttgataagagaaatatttttatctttgaccttggcggtggaacttttgatgtgtctatt |
300 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8576586 |
ggcagctcttgcgtatggccttcaaaagagagctaattgtgttgataaaagaaatatttttatctttgaccttggcggtggaacttttgatgtgtctatt |
8576487 |
T |
|
| Q |
301 |
ctcacagttaag |
312 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8576486 |
ctcacagttaag |
8576475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 8570771 - 8570460
Alignment:
| Q |
1 |
aaacgctttgttgctgaagaaatatcatctgtgattctctcaaagatgcgagagattgcagaggcttttctgcagacacctgttaagaatgcagtgattt |
100 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||| || || | ||||||||||||||||||||| |
|
|
| T |
8570771 |
aaacgttttgtagctgaagaaatatcatctgtgattctctcaaagatgcgagagattgcagaagcatttttggagtctcctgttaagaatgcagtgatta |
8570672 |
T |
|
| Q |
101 |
ctgtgcctgcttattttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgcagataatcaatgaaccgactgc |
200 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
8570671 |
ctgtacctgcttattttaatgattcacaacgaagagccactaaagatgcaggtgaaattgctggtctcaatgtaatgcggataatcaatgaaccgactgc |
8570572 |
T |
|
| Q |
201 |
ggcggctcttgcgtatggccttcaaaagagagctaattgtgttgataagagaaatatttttatctttgaccttggcggtggaacttttgatgtgtctatt |
300 |
Q |
| |
|
||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8570571 |
ggcagctcttgcatatggccttcaaaagagagctaattttgttgataagagaaatatttttatctttgaccttggcggtggaacttttgatgtgtctatt |
8570472 |
T |
|
| Q |
301 |
ctcacagttaag |
312 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8570471 |
ctcacagttaag |
8570460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 8582160 - 8581849
Alignment:
| Q |
1 |
aaacgctttgttgctgaagaaatatcatctgtgattctctcaaagatgcgagagattgcagaggcttttctgcagacacctgttaagaatgcagtgattt |
100 |
Q |
| |
|
|||| |||| |||||||||||||||||||||| ||||| || |||||||||||||||||||||| ||| || || ||||||||||||||||||||||| |
|
|
| T |
8582160 |
aaacactttcttgctgaagaaatatcatctgttattctgacacagatgcgagagattgcagaggcatttttggagtcacctgttaagaatgcagtgatta |
8582061 |
T |
|
| Q |
101 |
ctgtgcctgcttattttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgcagataatcaatgaaccgactgc |
200 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
8582060 |
ctgtacctgcttattttaatgattcacaacgaagagccactaaagatgcaggtgaaattgcaggtctcaatgtaatgcggataatcaatgaaccgactgc |
8581961 |
T |
|
| Q |
201 |
ggcggctcttgcgtatggccttcaaaagagagctaattgtgttgataagagaaatatttttatctttgaccttggcggtggaacttttgatgtgtctatt |
300 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8581960 |
ggcagctcttgcatatggccttcaaaagagagctaattgtgttgataagagaaatatttttatctttgaccttggaggtggaacttttgatgtgtctatt |
8581861 |
T |
|
| Q |
301 |
ctcacagttaag |
312 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8581860 |
ctcacagttaag |
8581849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 6 - 311
Target Start/End: Complemental strand, 8546087 - 8545783
Alignment:
| Q |
6 |
ctttgttgctgaagaaatatcatctgtgattctctcaaagatgcgagagattgcagaggcttttctgcagacacctgttaagaatgcagtgatttctgtg |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||| || || ||||||||||||||||||||||| |||| |
|
|
| T |
8546087 |
ctttgttgctgaagaaatatcatctgtgatcctctcacagatgcgagagattgcagaggcatttttggagtcacctgttaagaatgcagtgattactgta |
8545988 |
T |
|
| Q |
106 |
cctgcttattttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgcagataatcaatgaaccgactgcggcgg |
205 |
Q |
| |
|
|||||||||||||||||||| |||| |||| |||| ||||||||||||| |||||| ||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8545987 |
cctgcttattttaatgattcacaacaaagatccacaaaagatgcaggtgaaattgccggtctaaatgtcatgcggataatcaatgaaccgactgcggcgg |
8545888 |
T |
|
| Q |
206 |
ctcttgcgtatggccttcaaaagagagctaattgtgttgataagagaaatatttttatctttgaccttggcggtggaacttttgatgtgtctattctcac |
305 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8545887 |
ctcttgcatatggccttcaaaagagagctaattg-gttgataagagaaatatttttatctttgaccttggcggtggaacttttgatgtgtctattcttac |
8545789 |
T |
|
| Q |
306 |
agttaa |
311 |
Q |
| |
|
| |||| |
|
|
| T |
8545788 |
aattaa |
8545783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 8 - 312
Target Start/End: Complemental strand, 8559786 - 8559482
Alignment:
| Q |
8 |
ttgttgctgaagaaatatcatctgtgattctctcaaagatgcgagagattgcagaggcttttctgcagacacctgttaagaatgcagtgatttctgtgcc |
107 |
Q |
| |
|
||||||| |||||||||||| || |||||||| || ||||||||||||||||||| || ||| || || | | ||| ||||||| |||||| | || || |
|
|
| T |
8559786 |
ttgttgccgaagaaatatcagctatgattctcacacagatgcgagagattgcagaagcatttttggagtcgacggttgagaatgctgtgattaccgtacc |
8559687 |
T |
|
| Q |
108 |
tgcttattttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgcagataatcaatgaaccgactgcggcggct |
207 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||| ||||||||||||| |||||||||||| ||||| |||||||||||||||||||| ||||| || ||| |
|
|
| T |
8559686 |
tgcttattttaatgattctcaaagaagagccaccaaagatgcaggtgaaattgctggtcttaatgtaatgcagataatcaatgaaccaactgcagctgct |
8559587 |
T |
|
| Q |
208 |
cttgcgtatggccttcaaaagagagctaattgtgttgataagagaaatatttttatctttgaccttggcggtggaacttttgatgtgtctattctcacag |
307 |
Q |
| |
|
||||| ||||| |||||||||||| ||||||||||| | ||||||||||||| |||||||| || || ||||||||||||||||| ||| |||||||| |
|
|
| T |
8559586 |
cttgcatatggacttcaaaagagatctaattgtgttaaagagagaaatattttcatctttgatctcggtggtggaacttttgatgtttctcttctcacaa |
8559487 |
T |
|
| Q |
308 |
ttaag |
312 |
Q |
| |
|
||||| |
|
|
| T |
8559486 |
ttaag |
8559482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 41 - 312
Target Start/End: Complemental strand, 8602394 - 8602123
Alignment:
| Q |
41 |
caaagatgcgagagattgcagaggcttttctgcagacacctgttaagaatgcagtgatttctgtgcctgcttattttaatgattcccaacgaagagccac |
140 |
Q |
| |
|
|||||||||| || ||||||||| |||||| || ||||||| ||||||||||| || ||||||| ||||||||||||||||| || |||| |||||| |
|
|
| T |
8602394 |
caaagatgcgtgaaattgcagagaagtttctggagtcacctgtcaagaatgcagttgttactgtgccggcttattttaatgattctcagcgaaaagccac |
8602295 |
T |
|
| Q |
141 |
taaagatgcaggtgcaattgctggtctcaatgtcatgcagataatcaatgaaccgactgcggcggctcttgcgtatggccttcaaaagagagctaattgt |
240 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| |||| |||||||||||| || ||||| || |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8602294 |
aaaagatgctggtgccattgctggtctcaatgtaatgcggataatcaatgagccaactgcagctgctcttgcatatggccttcaaaagagagctaattgt |
8602195 |
T |
|
| Q |
241 |
gttgataagagaaatatttttatctttgaccttggcggtggaacttttgatgtgtctattctcacagttaag |
312 |
Q |
| |
|
||||| ||||||||||||| || ||||| ||||| ||||||||||||||||| ||| |||||||| ||||| |
|
|
| T |
8602194 |
gttgaagagagaaatattttcatatttgatcttggtggtggaacttttgatgtttctcttctcacaattaag |
8602123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 8538496 - 8538204
Alignment:
| Q |
1 |
aaacgctttgttgctgaagaaatatcatctgtgattctctcaaagatgcgagagattgcagaggcttttctgcagacacctgttaagaatgcagtgattt |
100 |
Q |
| |
|
|||| |||| ||||||||||||||||| || || | ||| |||||||||| ||| | || || | ||| || || ||||||| || |||||||||||| |
|
|
| T |
8538496 |
aaacacttttttgctgaagaaatatcagctatggtcctcacaaagatgcgggagttcgctgaagtatttttggagtcacctgtcaaaaatgcagtgatta |
8538397 |
T |
|
| Q |
101 |
ctgtgcctgcttattttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgcagataatcaatgaaccgactgc |
200 |
Q |
| |
|
| || ||||||||||| |||||||| || ||||||||||| |||||||| |||| |||||||| |||||||| |||| ||||||||||||||| || || |
|
|
| T |
8538396 |
cagtacctgcttatttcaatgattcacagcgaagagccaccaaagatgctggtgtcattgctggcctcaatgtaatgcggataatcaatgaacctacagc |
8538297 |
T |
|
| Q |
201 |
ggcggctcttgcgtatggccttcaaaagagagctaattgtgttgataagagaaatatttttatctttgaccttggcggtggaacttttgatgt |
293 |
Q |
| |
|
|| |||||||| || ||||||||||||||||||||||||||||| ||||||| |||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
8538296 |
tgctgctcttgcatacggccttcaaaagagagctaattgtgttgaagagagaaaagttttcatctttgatcttggtggtggaacttttgatgt |
8538204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 42 - 312
Target Start/End: Original strand, 8382625 - 8382895
Alignment:
| Q |
42 |
aaagatgcgagagattgcagaggcttttctgcagacacctgttaagaatgcagtgatttctgtgcctgcttattttaatgattcccaacgaagagccact |
141 |
Q |
| |
|
||||||||| |||||||||||| |||| || || ||||| | |||||| ||| || | |||||||| ||||| |||||||| ||||| | |||||| |
|
|
| T |
8382625 |
aaagatgcgtgagattgcagagaattttttggagtcacctatcgagaatgtagttgttaccgtgcctgcatatttcaatgattctcaacggaaagccaca |
8382724 |
T |
|
| Q |
142 |
aaagatgcaggtgcaattgctggtctcaatgtcatgcagataatcaatgaaccgactgcggcggctcttgcgtatggccttcaaaagagagctaattgtg |
241 |
Q |
| |
|
|||||||| ||||| |||||||| |||||||| |||| |||||||||||| || ||||| || |||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
8382725 |
aaagatgctggtgcgattgctggcctcaatgtaatgcggataatcaatgagccaactgccgctgctcttgcatatggccttcagaagagagctaattgtc |
8382824 |
T |
|
| Q |
242 |
ttgataagagaaatatttttatctttgaccttggcggtggaacttttgatgtgtctattctcacagttaag |
312 |
Q |
| |
|
|||| ||||||||||||| |||||||| ||||| ||||||||||||||||||||| | |||||| ||||| |
|
|
| T |
8382825 |
ttgaagagagaaatattttcatctttgatcttggtggtggaacttttgatgtgtctctcctcacaattaag |
8382895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 89 - 311
Target Start/End: Complemental strand, 8610289 - 8610067
Alignment:
| Q |
89 |
atgcagtgatttctgtgcctgcttattttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgcagataatcaa |
188 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| || || | |||||| |||||||| |||| ||| |||| || ||||| || | ||| ||||| |
|
|
| T |
8610289 |
atgcagtgatcactgtgcctgcttattttaatgattctcagcggaaagccacaaaagatgctggtgtcatttctggccttaatgtaatccggattatcaa |
8610190 |
T |
|
| Q |
189 |
tgaaccgactgcggcggctcttgcgtatggccttcaaaagagagctaattgtgttgataagagaaatatttttatctttgaccttggcggtggaactttt |
288 |
Q |
| |
|
|||||| || || ||||||||||| ||||| ||||| ||||||||||||||||| || || |||||||||||||||||||| ||||| ||||| ||||| |
|
|
| T |
8610189 |
tgaaccaacggctgcggctcttgcatatggtcttcagaagagagctaattgtgtggaaaatagaaatatttttatctttgatcttggtggtgggactttc |
8610090 |
T |
|
| Q |
289 |
gatgtgtctattctcacagttaa |
311 |
Q |
| |
|
||||||||| |||||||| |||| |
|
|
| T |
8610089 |
gatgtgtctgttctcacaattaa |
8610067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 5 - 312
Target Start/End: Original strand, 29577381 - 29577691
Alignment:
| Q |
5 |
gctttgttgctgaagaaatatcatctgtgattctctcaaagatgcgagagattgcagaggcttttctgcagacacctgttaagaatgcagtgatttctgt |
104 |
Q |
| |
|
||||||||||||| |||||||| ||| |||| ||||||||||||| |||||||||||| ||| || || ||| || |||||||||||||| | || |
|
|
| T |
29577381 |
gctttgttgctgaggaaatatcgtctatgatcctctcaaagatgcaggagattgcagagaaatttttggagttacccgtaaagaatgcagtgatcacagt |
29577480 |
T |
|
| Q |
105 |
gcctgcttattttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgcagataatcaatgaaccgactgcggcg |
204 |
Q |
| |
|
||| |||||||| |||||||| || |||| |||||| |||||||| || |||||||| |||||||| |||| ||||||||||||||| ||||| || |
|
|
| T |
29577481 |
gccagcttatttcaatgattctcagcgaaaagccaccaaagatgccggcattattgctggcctcaatgtaatgcggataatcaatgaaccaactgctgct |
29577580 |
T |
|
| Q |
205 |
gctcttgcgtatggccttcaaaagagagctaattgtgttgat---aagagaaatatttttatctttgaccttggcggtggaacttttgatgtgtctattc |
301 |
Q |
| |
|
|| ||||| ||||| |||||||||||| ||||| ||||| | ||| ||||| | || |||||||| ||||| ||||| || |||||||||||| ||| |
|
|
| T |
29577581 |
gcacttgcatatggaattcaaaagagaggtaattttgttgttggaaagcgaaatgtattcatctttgatcttggtggtggcacctttgatgtgtctcttc |
29577680 |
T |
|
| Q |
302 |
tcacagttaag |
312 |
Q |
| |
|
||||| ||||| |
|
|
| T |
29577681 |
tcacacttaag |
29577691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 7 - 306
Target Start/End: Original strand, 29581555 - 29581854
Alignment:
| Q |
7 |
tttgttgctgaagaaatatcatctgtgattctctcaaagatgcgagagattgcagaggcttttctgcagacacctgttaagaatgcagtgatttctgtgc |
106 |
Q |
| |
|
||||||||||| |||||||||||| |||| ||||||||||||| || ||||||||| ||| || | ||||| ||||||||||||||| | |||| |
|
|
| T |
29581555 |
tttgttgctgaggaaatatcatctatgatcctctcaaagatgcatgatattgcagagaaatttttggaattgcctgtaaagaatgcagtgattaccgtgc |
29581654 |
T |
|
| Q |
107 |
ctgcttattttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgcagataatcaatgaaccgactgcggcggc |
206 |
Q |
| |
|
|||||||||| |||||||| || |||| |||||| |||||||| || || ||||| |||||||| ||| ||||||||| ||||| ||||| || || |
|
|
| T |
29581655 |
ctgcttatttcaatgattctcagcgaaaagccaccaaagatgctggcattatagctggcctcaatgtaatgaggataatcaacgaaccaactgctgctgc |
29581754 |
T |
|
| Q |
207 |
tcttgcgtatggccttcaaaagagagctaattgtgttgataagagaaatatttttatctttgaccttggcggtggaacttttgatgtgtctattctcaca |
306 |
Q |
| |
|
||||| ||||| |||||||| ||| ||||| ||||| || ||||||| || |||||||| ||||| ||||| ||||||||||||||| |||||||| |
|
|
| T |
29581755 |
acttgcatatggtattcaaaagggaggtaattttgttggaaaacgaaatatattcatctttgatcttggtggtggcacttttgatgtgtctcttctcaca |
29581854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 7877459 - 7877671
Alignment:
| Q |
19 |
gaaatatcatctgtgattctctcaaagatgcgagagattgcagaggcttttctgcagacacctgttaagaatgcagtgatttctgtgcctgcttatttta |
118 |
Q |
| |
|
||||||||||| |||| || |||||||||| |||||||||||| ||| || || ||||||| ||||||||||| || ||||||| |||||||| | |
|
|
| T |
7877459 |
gaaatatcatccatgatccttacaaagatgcgcgagattgcagagaagtttttggagtcacctgtcaagaatgcagttgttactgtgccggcttatttca |
7877558 |
T |
|
| Q |
119 |
atgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgcagataatcaatgaaccgactgcggcggctcttgcgtatgg |
218 |
Q |
| |
|
||||||| ||||||| |||||| |||||||| |||||| |||| || |||||||| |||| |||||| |||||||| ||||| || || ||||| ||||| |
|
|
| T |
7877559 |
atgattctcaacgaaaagccacaaaagatgctggtgcagttgccggcctcaatgttatgcggataattaatgaaccaactgctgctgcccttgcatatgg |
7877658 |
T |
|
| Q |
219 |
ccttcaaaagaga |
231 |
Q |
| |
|
||||||||||||| |
|
|
| T |
7877659 |
ccttcaaaagaga |
7877671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 41 - 304
Target Start/End: Original strand, 8636091 - 8636354
Alignment:
| Q |
41 |
caaagatgcgagagattgcagaggcttttctgcagacacctgttaagaatgcagtgatttctgtgcctgcttattttaatgattcccaacgaagagccac |
140 |
Q |
| |
|
||||||||||||||||||| ||||| | |||| | || |||| ||||||||||| ||| ||||||| |||||||| |||||||| || || | | |||| |
|
|
| T |
8636091 |
caaagatgcgagagattgctgaggcatatctggaatcatctgtcaagaatgcagtcattactgtgcccgcttatttcaatgattctcagcgtaaatccac |
8636190 |
T |
|
| Q |
141 |
taaagatgcaggtgcaattgctggtctcaatgtcatgcagataatcaatgaaccgactgcggcggctcttgcgtatggccttcaaaagagagctaattgt |
240 |
Q |
| |
|
|||||||| ||||| ||||| || || ||||| || | ||||||||||||||| ||||| || ||| |||||||||| ||||||||||||| ||| ||| |
|
|
| T |
8636191 |
caaagatgctggtgccattgccggccttaatgtaattcggataatcaatgaaccaactgctgcagcttttgcgtatggacttcaaaagagaggtaactgt |
8636290 |
T |
|
| Q |
241 |
gttgataagagaaatatttttatctttgaccttggcggtggaacttttgatgtgtctattctca |
304 |
Q |
| |
|
||| | ||||||| ||||| | ||||| ||||| ||||| || || || |||||||| |||| |
|
|
| T |
8636291 |
gttaaagagagaaacattttcgtatttgatcttggtggtggtacattcgacgtgtctatactca |
8636354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 19 - 299
Target Start/End: Original strand, 13333182 - 13333462
Alignment:
| Q |
19 |
gaaatatcatctgtgattctctcaaagatgcgagagattgcagaggcttttctgcagacacctgttaagaatgcagtgatttctgtgcctgcttatttta |
118 |
Q |
| |
|
|||||||||||| || | || |||||||||||||| |||||||||| | | || | |||| || |||||||| || || ||||||| ||||| || | |
|
|
| T |
13333182 |
gaaatatcatctatggtccttacaaagatgcgagaggttgcagaggcatatatggggtcaccagtcaagaatgccgttgttactgtgccggcttacttca |
13333281 |
T |
|
| Q |
119 |
atgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgcagataatcaatgaaccgactgcggcggctcttgcgtatgg |
218 |
Q |
| |
|
||||||| || |||| ||||| | |||||| ||||| |||||||| || ||| |||| | |||||||||||||| ||||| || ||| |||| ||||| |
|
|
| T |
13333282 |
atgattctcagcgaaaggccaccatagatgctggtgctattgctggccttaatatcattcgaataatcaatgaacctactgctgcagctattgcatatgg |
13333381 |
T |
|
| Q |
219 |
ccttcaaaagagagctaattgtgttgataagagaaatatttttatctttgaccttggcggtggaacttttgatgtgtctat |
299 |
Q |
| |
|
|||| | |||||| | |||||| || |||| ||||||||||| ||||||| || || ||||| ||||||||||||||||| |
|
|
| T |
13333382 |
ccttgacaagagacgtgattgtgatggtaagcgaaatatttttgtctttgatctgggtggtggtacttttgatgtgtctat |
13333462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 42 - 312
Target Start/End: Original strand, 10494123 - 10494393
Alignment:
| Q |
42 |
aaagatgcgagagattgcagaggcttttctgcagacacctgttaagaatgcagtgatttctgtgcctgcttattttaatgattcccaacgaagagccact |
141 |
Q |
| |
|
||||||||||||| |||||||||| | | || | |||| || |||||||| || || ||||||| ||||| || || ||||| ||||||| || ||| |
|
|
| T |
10494123 |
aaagatgcgagaggttgcagaggcatatttggggtcaccagtcaagaatgctgttgttactgtgccggcttacttcaacgattctcaacgaaaggctact |
10494222 |
T |
|
| Q |
142 |
aaagatgcaggtgcaattgctggtctcaatgtcatgcagataatcaatgaaccgactgcggcggctcttgcgtatggccttcaaaagagagctaattgtg |
241 |
Q |
| |
|
| ||||| ||||| |||||||| || |||||||| | ||||||||||||||| ||||| || ||| |||| ||||||||| | |||||| | |||||| |
|
|
| T |
10494223 |
attgatgctggtgctattgctggccttaatgtcattcggataatcaatgaacctactgctgcagctattgcatatggccttgacaagagaagtgattgtg |
10494322 |
T |
|
| Q |
242 |
ttgataagagaaatatttttatctttgaccttggcggtggaacttttgatgtgtctattctcacagttaag |
312 |
Q |
| |
|
| ||| ||||||||||| ||||||| || || ||||| ||||||||||||||||| |||||| ||||| |
|
|
| T |
10494323 |
agggtaaccgaaatatttttgtctttgatctgggtggtggtacttttgatgtgtctatcctcacaattaag |
10494393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 12 - 297
Target Start/End: Complemental strand, 8647326 - 8647041
Alignment:
| Q |
12 |
tgctgaagaaatatcatctgtgattctctcaaagatgcgagagattgcagaggcttttctgcagacacctgttaagaatgcagtgatttctgtgcctgct |
111 |
Q |
| |
|
|||||| ||||||||||| |||| ||| |||||||||||||| |||||||| | | | | | ||||| ||||||||||| || |||||||||| |
|
|
| T |
8647326 |
tgctgaggaaatatcatcgatgatcctcacaaagatgcgagaggttgcagagaaatatttaatgtcccctgtaaagaatgcagttgttactgtgcctgca |
8647227 |
T |
|
| Q |
112 |
tattttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgcagataatcaatgaaccgactgcggcggctcttg |
211 |
Q |
| |
|
|| || ||||||| || |||| |||||||| |||||| || || |||||||| || ||| |||| | ||||||||||||||| || || || ||||| | |
|
|
| T |
8647226 |
tacttcaatgattatcagcgaaaagccactatagatgccggggccattgctggccttaatatcatccggataatcaatgaaccaacagctgctgctctcg |
8647127 |
T |
|
| Q |
212 |
cgtatggccttcaaaagagagctaattgtgttgataagagaaatatttttatctttgaccttggcggtggaacttttgatgtgtct |
297 |
Q |
| |
|
| ||||||||| | |||||| | ||||||| ||| | ||||||| || ||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
8647126 |
catatggccttgacaagagaacaaattgtgctgaagaacgaaatatattcatcttcgaccttggtggtggaacttttgatgtgtct |
8647041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 88 - 299
Target Start/End: Complemental strand, 6789885 - 6789674
Alignment:
| Q |
88 |
aatgcagtgatttctgtgcctgcttattttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgcagataatca |
187 |
Q |
| |
|
|||||||| ||| |||||||||||||||| |||||||| ||||| | ||||||| |||||| ||||| ||||||||||| ||||| || | ||||||| |
|
|
| T |
6789885 |
aatgcagttattactgtgcctgcttatttcaatgattctcaacggaaagccactttagatgctggtgccattgctggtcttaatgttatacgaataatca |
6789786 |
T |
|
| Q |
188 |
atgaaccgactgcggcggctcttgcgtatggccttcaaaagagagctaattgtgttgataagagaaatatttttatctttgaccttggcggtggaacttt |
287 |
Q |
| |
|
||||||| || || || |||||||| ||||||||| | |||||| |||||| | || | | ||||||||| |||| |||||||| ||||| ||||| |
|
|
| T |
6789785 |
atgaaccaacagctgctgctcttgcatatggccttgataagagaactaattacggtggagaaaaaaatattttcgtcttcgaccttggtggtggcacttt |
6789686 |
T |
|
| Q |
288 |
tgatgtgtctat |
299 |
Q |
| |
|
||||||||||| |
|
|
| T |
6789685 |
cgatgtgtctat |
6789674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 12 - 312
Target Start/End: Complemental strand, 8667868 - 8667568
Alignment:
| Q |
12 |
tgctgaagaaatatcatctgtgattctctcaaagatgcgagagattgcagaggcttttctgcagacacctgttaagaatgcagtgatttctgtgcctgct |
111 |
Q |
| |
|
|||||| |||||||| ||| || | || |||||||||||||| |||| ||||| | |||| | | || || |||||||| || || ||||||| ||| |
|
|
| T |
8667868 |
tgctgaggaaatatcttctatggtgcttacaaagatgcgagaggttgcggaggcatatctggggtcgccggtcaagaatgccgttgttactgtgccagct |
8667769 |
T |
|
| Q |
112 |
tattttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgcagataatcaatgaaccgactgcggcggctcttg |
211 |
Q |
| |
|
|| || |||||||| || |||| ||||| | |||||| ||| | |||||||| || |||||||| | ||||||||||||||| |||||||| ||| ||| |
|
|
| T |
8667768 |
tacttcaatgattctcagcgaaaggccaccatagatgctggtactattgctggacttaatgtcattcggataatcaatgaacctactgcggcagctattg |
8667669 |
T |
|
| Q |
212 |
cgtatggccttcaaaagagagctaattgtgttgataagagaaatatttttatctttgaccttggcggtggaacttttgatgtgtctattctcacagttaa |
311 |
Q |
| |
|
| ||||||||| | |||||| | | |||| || || ||||||||||| ||||||| || || || || ||||||||||||||||| |||||| |||| |
|
|
| T |
8667668 |
catatggccttgacaagagaaatgactgtgatggtagccgaaatatttttgtctttgatctgggtggcgggacttttgatgtgtctatcctcacaattaa |
8667569 |
T |
|
| Q |
312 |
g |
312 |
Q |
| |
|
| |
|
|
| T |
8667568 |
g |
8667568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 101 - 311
Target Start/End: Original strand, 8585514 - 8585724
Alignment:
| Q |
101 |
ctgtgcctgcttattttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgcagataatcaatgaaccgactgc |
200 |
Q |
| |
|
|||||||||||||||| |||||||| || |||| |||||| | ||||| ||||| |||||||| || ||||| ||| ||||||||||||||| ||||| |
|
|
| T |
8585514 |
ctgtgcctgcttatttcaatgattctcagcgaaaagccaccatggatgctggtgccattgctggccttaatgttatgaggataatcaatgaacccactgc |
8585613 |
T |
|
| Q |
201 |
ggcggctcttgcgtatggccttcaaaagagagctaattgtgttgataagagaaatatttttatctttgaccttggcggtggaacttttgatgtgtctatt |
300 |
Q |
| |
|
|| ||| |||| ||||||||| | || | || ||| |||| || | | ||||||||||| | ||||| ||||| ||||| ||||||||||||||| | |
|
|
| T |
8585614 |
tgcagctattgcatatggccttgacaacaaaggtaactgtgatggtgaacgaaatatttttgtgtttgatcttggtggtgggacttttgatgtgtctctc |
8585713 |
T |
|
| Q |
301 |
ctcacagttaa |
311 |
Q |
| |
|
|||||| |||| |
|
|
| T |
8585714 |
ctcacaattaa |
8585724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #20
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 101 - 299
Target Start/End: Complemental strand, 1301824 - 1301622
Alignment:
| Q |
101 |
ctgtgcctgcttattttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgcagataatcaatgaac----cga |
196 |
Q |
| |
|
|||||||||| |||| |||||||| || |||| |||||| | |||||| |||||||||||||| || |||||||| |||||||| ||||||| | | |
|
|
| T |
1301824 |
ctgtgcctgcacatttcaatgattctcagcgaaaagccaccatagatgccggtgcaattgctggccttaatgtcattcagataattaatgaacctagcta |
1301725 |
T |
|
| Q |
197 |
ctgcggcggctcttgcgtatggccttcaaaagagagctaattgtgttgataagagaaatatttttatctttgaccttggcggtggaacttttgatgtgtc |
296 |
Q |
| |
|
|||| || ||| |||||||||| || | |||||| | | |||| || ||| | |||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
1301724 |
ctgctgcagctattgcgtatggttttgacaagagaagtgactgtgatggtaaacggaatattttggtctttgaccttggcggtggtacttttgatgtgtc |
1301625 |
T |
|
| Q |
297 |
tat |
299 |
Q |
| |
|
||| |
|
|
| T |
1301624 |
tat |
1301622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #21
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 35 - 232
Target Start/End: Complemental strand, 8591064 - 8590867
Alignment:
| Q |
35 |
ttctctcaaagatgcgagagattgcagaggcttttctgcagacacctgttaagaatgcagtgatttctgtgcctgcttattttaatgattcccaacgaag |
134 |
Q |
| |
|
||||| ||||||||||||||||||| || ||| || || ||||||| ||||||||||| || ||||||| ||||||||||||||||| || | | |
|
|
| T |
8591064 |
ttctcacaaagatgcgagagattgctgaaaagtttttggagtcacctgtcaagaatgcagttgttactgtgccagcttattttaatgattctcagaggaa |
8590965 |
T |
|
| Q |
135 |
agccactaaagatgcaggtgcaattgctggtctcaatgtcatgcagataatcaatgaaccgactgcggcggctcttgcgtatggccttcaaaagagag |
232 |
Q |
| |
|
||| || |||||||| |||| |||||||| | ||||| |||| |||||| |||||||| ||||| || | ||||| ||||||||||||||||||| |
|
|
| T |
8590964 |
agctaccaaagatgctggtgtcattgctggcttgaatgtaatgcggataattaatgaaccaactgccgctggccttgcatatggccttcaaaagagag |
8590867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #22
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 82 - 297
Target Start/End: Complemental strand, 17268318 - 17268103
Alignment:
| Q |
82 |
gttaagaatgcagtgatttctgtgcctgcttattttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgcaga |
181 |
Q |
| |
|
|||| |||||| || ||| |||| || ||||| || || ||||| || |||| |||||| | |||||| |||| |||||||| || ||||| || || |
|
|
| T |
17268318 |
gttatgaatgctgtcattactgtcccggcttacttcaacgattctcagcgaaaagccaccatagatgctggtgtcattgctggccttaatgtattgaagg |
17268219 |
T |
|
| Q |
182 |
taatcaatgaaccgactgcggcggctcttgcgtatggccttcaaaagagagctaattgtgttgataagagaaatatttttatctttgaccttggcggtgg |
281 |
Q |
| |
|
||||||||||||| ||||| || ||| |||| ||||||||| |||||| |||| |||||||| | | ||||||||| ||||||||||||| ||||| |
|
|
| T |
17268218 |
taatcaatgaaccaactgctgcagctattgcatatggccttggcaagagaactaactgtgttgaagaacggaatatttttgtctttgaccttggtggtgg |
17268119 |
T |
|
| Q |
282 |
aacttttgatgtgtct |
297 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
17268118 |
gacttttgatgtgtct |
17268103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #23
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 77 - 299
Target Start/End: Complemental strand, 8659747 - 8659525
Alignment:
| Q |
77 |
cacctgttaagaatgcagtgatttctgtgcctgcttattttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcat |
176 |
Q |
| |
|
||||||| |||||||| || || | |||||||| || || |||||||| || |||| |||||| | |||| | ||||| |||||||| || |||||||| |
|
|
| T |
8659747 |
cacctgtgaagaatgctgttgttacagtgcctgcatagttcaatgattctcagcgaaaagccaccatagattccggtgccattgctggccttaatgtcat |
8659648 |
T |
|
| Q |
177 |
gcagataatcaatgaaccgactgcggcggctcttgcgtatggccttcaaaagagagctaattgtgttgataagagaaatatttttatctttgaccttggc |
276 |
Q |
| |
|
|||||||| |||||||| ||||| || ||| |||| ||||| || | ||||||| | | |||| || ||| ||||||||| ||||||| ||||| |
|
|
| T |
8659647 |
tcagataattaatgaacctactgctgcagctattgcatatggttttgacaagagaggtgactgtgatggtaaacaaaatattttggtctttgatcttggt |
8659548 |
T |
|
| Q |
277 |
ggtggaacttttgatgtgtctat |
299 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
8659547 |
ggtggtacttttgatgtgtctat |
8659525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #24
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 53 - 311
Target Start/End: Complemental strand, 8628940 - 8628682
Alignment:
| Q |
53 |
agattgcagaggcttttctgcagacacctgttaagaatgcagtgatttctgtgcctgcttattttaatgattcccaacgaagagccactaaagatgcagg |
152 |
Q |
| |
|
||||||||||||||| | || | ||||||| || |||||||| | | |||||||||||||| |||||||| || |||| |||||| | |||| || |
|
|
| T |
8628940 |
agattgcagaggcttatttgaaatcacctgtaaaaaatgcagttgtcaccgtgcctgcttatttcaatgattctcagcgaaaagccaccatgaatgctgg |
8628841 |
T |
|
| Q |
153 |
tgcaattgctggtctcaatgtcatgcagataatcaatgaaccgactgcggcggctcttgcgtatggccttcaaaagagagctaattgtgttgataagaga |
252 |
Q |
| |
|
||| |||||||| || ||||| ||| |||||||||||| || ||||| || ||| |||| ||||||||| | || | || || |||| || | | || |
|
|
| T |
8628840 |
tgccattgctggccttaatgttatgaggataatcaatgaccccactgctgcagctattgcatatggccttgacaacaaaggtaggtgtgatggtgaacga |
8628741 |
T |
|
| Q |
253 |
aatatttttatctttgaccttggcggtggaacttttgatgtgtctattctcacagttaa |
311 |
Q |
| |
|
||||||||| | ||||| ||||| ||||| ||||||||||||||| | |||||| |||| |
|
|
| T |
8628740 |
aatatttttgtgtttgatcttggtggtgggacttttgatgtgtctctcctcacaattaa |
8628682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #25
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 231
Target Start/End: Original strand, 8671349 - 8671568
Alignment:
| Q |
12 |
tgctgaagaaatatcatctgtgattctctcaaagatgcgagagattgcagaggcttttctgcagacacctgttaagaatgcagtgatttctgtgcctgct |
111 |
Q |
| |
|
|||||| |||||||| ||| || | || |||||||||||||| |||| ||||| | |||| || |||| || |||||||| || || | ||||| ||| |
|
|
| T |
8671349 |
tgctgaggaaatatcttctatggtgcttacaaagatgcgagaggttgcggaggcatatctggagtcaccggtcaagaatgccgttgttaccgtgccagct |
8671448 |
T |
|
| Q |
112 |
tattttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgcagataatcaatgaaccgactgcggcggctcttg |
211 |
Q |
| |
|
|| || |||||||| || |||| ||||| | ||||| ||| | |||||||| || |||||||| | ||||||||||||||| ||||| || ||| ||| |
|
|
| T |
8671449 |
tacttcaatgattctcagcgaacggccaccattgatgctggtactattgctggacttaatgtcattcggataatcaatgaacctactgctgcagctattg |
8671548 |
T |
|
| Q |
212 |
cgtatggccttcaaaagaga |
231 |
Q |
| |
|
| ||||||||| | |||||| |
|
|
| T |
8671549 |
catatggccttgacaagaga |
8671568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #26
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 41 - 222
Target Start/End: Original strand, 27830623 - 27830804
Alignment:
| Q |
41 |
caaagatgcgagagattgcagaggcttttctgcagacacctgttaagaatgcagtgatttctgtgcctgcttattttaatgattcccaacgaagagccac |
140 |
Q |
| |
|
|||||||||||||||| || ||||| | | |||| |||| |||||||||||||| || | ||||| |||||||| ||||| || ||||||| |||||| |
|
|
| T |
27830623 |
caaagatgcgagagatcgcggaggcatatttgcaatcaccggttaagaatgcagtaataaccgtgccagcttatttcaatgactctcaacgaaaagccac |
27830722 |
T |
|
| Q |
141 |
taaagatgcaggtgcaattgctggtctcaatgtcatgcagataatcaatgaaccgactgcggcggctcttgcgtatggcctt |
222 |
Q |
| |
|
| |||| | ||||| |||||||| || ||||| |||| |||||| | || || ||||| || ||| |||| ||||||||| |
|
|
| T |
27830723 |
tgtagattccggtgccattgctggccttaatgttatgcggataataagcgagcctactgctgcagctattgcatatggcctt |
27830804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 312
Target Start/End: Complemental strand, 8654899 - 8654599
Alignment:
| Q |
12 |
tgctgaagaaatatcatctgtgattctctcaaagatgcgagagattgcagaggcttttctgcagacacctgttaagaatgcagtgatttctgtgcctgct |
111 |
Q |
| |
|
|||||| ||||||||||||| | |||| ||||||||||||||||||||||||| | || |||| || || |||| || || ||||||| || |
|
|
| T |
8654899 |
tgctgaggaaatatcatctgcggttcttacaaagatgcgagagattgcagaggcataccttggatcacccgtcaaaaatgtcgttgttactgtgccggca |
8654800 |
T |
|
| Q |
112 |
tattttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgcagataatcaatgaaccgactgcggcggctcttg |
211 |
Q |
| |
|
|| || ||||| || || |||| ||| || | |||||| ||||| |||||||| || || ||||| | |||| |||||||||| ||||| || ||| ||| |
|
|
| T |
8654799 |
tacttcaatgactctcagcgaaaagcaaccatagatgctggtgccattgctggacttaacgtcattcggatactcaatgaacctactgccgcagctattg |
8654700 |
T |
|
| Q |
212 |
cgtatggccttcaaaagagagctaattgtgttgataagagaaatatttttatctttgaccttggcggtggaacttttgatgtgtctattctcacagttaa |
311 |
Q |
| |
|
| ||||||||| | ||| || ||| | || || ||| | |||||||| | ||||| ||||| ||||| ||||||||||||||||| |||||| |||| |
|
|
| T |
8654699 |
catatggccttgacaagcgaagtaactatgatggtaaacggaatattttggtatttgatcttggtggtggtacttttgatgtgtctatactcacaattaa |
8654600 |
T |
|
| Q |
312 |
g |
312 |
Q |
| |
|
| |
|
|
| T |
8654599 |
g |
8654599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 297
Target Start/End: Complemental strand, 17260601 - 17260405
Alignment:
| Q |
101 |
ctgtgcctgcttattttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgcagataatcaatgaaccgactgc |
200 |
Q |
| |
|
|||| ||||||||||| |||||||| || |||| |||||| | |||||| |||| |||||||| || |||| || || |||| |||||||| | ||| |
|
|
| T |
17260601 |
ctgttcctgcttatttcaatgattctcagcgaaaagccaccatagatgctggtgttattgctggcctttatgttttgaagttaattaatgaacctattgc |
17260502 |
T |
|
| Q |
201 |
ggcggctcttgcgtatggccttcaaaagagagctaattgtgttgataagagaaatatttttatctttgaccttggcggtggaacttttgatgtgtct |
297 |
Q |
| |
|
|| ||| |||| ||||||||| |||||| ||||||||||| | | ||||||||| ||||||||||||| || || ||||||||||||||| |
|
|
| T |
17260501 |
tgcagctattgcatatggccttgtcaagagaactaattgtgtttaagtacggaatatttttgtctttgaccttggtggggggacttttgatgtgtct |
17260405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 79 - 312
Target Start/End: Complemental strand, 3147654 - 3147413
Alignment:
| Q |
79 |
cctgttaagaatgcagtgatttctgtgcctgcttattttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgc |
178 |
Q |
| |
|
||||| ||||||||||| || | || ||||||||||| |||||| | || || | ||| || | |||||| |||| |||||||| || ||| | |||| |
|
|
| T |
3147654 |
cctgtcaagaatgcagttgttaccgtacctgcttatttcaatgatgctcagcggaaagcgacaatagatgctggtgttattgctggccttaatattatgc |
3147555 |
T |
|
| Q |
179 |
agataatcaatgaaccgactgcggcggctcttgcgtatggccttcaaaagagagc--------taattgtgttgataagagaaatatttttatctttgac |
270 |
Q |
| |
|
||||||||||||||| ||||| || ||| |||||||||| || | |||||| | ||||||||| || || | |||||||||||||||||| |
|
|
| T |
3147554 |
ggataatcaatgaacctactgctgcagctattgcgtatggactggacaagagaactaattgtgtaattgtgtagaggagcgtaatatttttatctttgac |
3147455 |
T |
|
| Q |
271 |
cttggcggtggaacttttgatgtgtctattctcacagttaag |
312 |
Q |
| |
|
| || ||||| ||||||||||||||| |||| ||| ||||| |
|
|
| T |
3147454 |
ttgggtggtgggacttttgatgtgtctcttcttacaattaag |
3147413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 296
Target Start/End: Complemental strand, 6786925 - 6786816
Alignment:
| Q |
187 |
aatgaaccgactgcggcggctcttgcgtatggccttcaaaagagagctaattgtgttgataagagaaatatttttatctttgaccttggcggtggaactt |
286 |
Q |
| |
|
|||||||| |||| || |||||||| |||| ||| | |||||||| |||| |||||| || || ||||| ||||||||||| ||||| || |||||| |
|
|
| T |
6786925 |
aatgaacctactgttgctgctcttgcatatgatctttataagagagcaaattttgttgaaaataggaatatatttatctttgatcttggttgtagaactt |
6786826 |
T |
|
| Q |
287 |
ttgatgtgtc |
296 |
Q |
| |
|
||||| |||| |
|
|
| T |
6786825 |
ttgatatgtc |
6786816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 306
Target Start/End: Complemental strand, 8590837 - 8590793
Alignment:
| Q |
262 |
atctttgaccttggcggtggaacttttgatgtgtctattctcaca |
306 |
Q |
| |
|
|||||||| ||||| ||||| ||||||||||||||| |||||||| |
|
|
| T |
8590837 |
atctttgatcttggtggtggcacttttgatgtgtctcttctcaca |
8590793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 27830835 - 27830879
Alignment:
| Q |
253 |
aatatttttatctttgaccttggcggtggaacttttgatgtgtct |
297 |
Q |
| |
|
||||||||| | ||||||||||| ||||| ||||||||||||||| |
|
|
| T |
27830835 |
aatatttttgtgtttgaccttggtggtgggacttttgatgtgtct |
27830879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 6 - 308
Target Start/End: Complemental strand, 12528959 - 12528657
Alignment:
| Q |
6 |
ctttgttgctgaagaaatatcatctgtgattctctcaaagatgcgagagattgcagaggcttttctgcagacacctgttaagaatgcagtgatttctgtg |
105 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||| ||| ||||||||||||||||||| || ||||| || ||||||||||||||||||||||| | ||| |
|
|
| T |
12528959 |
ctttgttgctgaagaaatatcctctatgattctatcacagatgcgagagattgcagatgcatttcttgagtcacctgttaagaatgcagtgattacggtg |
12528860 |
T |
|
| Q |
106 |
cctgcttattttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgcagataatcaatgaaccgactgcggcgg |
205 |
Q |
| |
|
|| || ||||| |||||||| || ||| ||||||| || ||||| |||| |||||||| |||||||| || | ||||||||| ||||| ||||| || | |
|
|
| T |
12528859 |
ccagcgtatttcaatgattcgcagcgacgagccaccaaggatgctggtgtcattgctggcctcaatgtaatacggataatcaacgaaccaactgcagctg |
12528760 |
T |
|
| Q |
206 |
ctcttgcgtatggccttcaaaagagagctaattgtgttgataagagaaatatttttatctttgaccttggcggtggaacttttgatgtgtctattctcac |
305 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||| |||| |||||| |||||||| ||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
12528759 |
ctcttgcatatggcattcaaaagagagctaattgtcttgaagagagaaggatttttatttttgaccttggcggtggaacttttgatgtgtctcttcttac |
12528660 |
T |
|
| Q |
306 |
agt |
308 |
Q |
| |
|
||| |
|
|
| T |
12528659 |
agt |
12528657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 16 - 297
Target Start/End: Complemental strand, 43745292 - 43745013
Alignment:
| Q |
16 |
gaagaaatatcatctgtgattctctcaaagatgcgagagattgcagaggcttttctgcagacacctgttaagaatgcagtgatttctgtgcctgcttatt |
115 |
Q |
| |
|
|||||||| |||||| ||||||| |||||||||| |||||||||||| | ||| |||| ||||| ||||||||||| || ||||||| ||||||| |
|
|
| T |
43745292 |
gaagaaatctcatctatgattctaacaaagatgcgtgagattgcagagacatttttgcaattgcctgtcaagaatgcagttgttactgtgccggcttatt |
43745193 |
T |
|
| Q |
116 |
ttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgcagataatcaatgaaccgactgcggcggctcttgcgta |
215 |
Q |
| |
|
| ||||||| || || | |||||||| ||||| ||||| |||||||| || |||| ||| |||||||||||||||| ||||| || ||| |||| || |
|
|
| T |
43745192 |
tcaatgattatcagcggaaagccacta--gatgctggtgccattgctgggcttgatgttatgaagataatcaatgaacccactgctgcagctattgcata |
43745095 |
T |
|
| Q |
216 |
tggccttcaaaagagagctaattgtgt-tgataagagaaatatttttatctttgaccttggcggtggaacttttgatgtgtct |
297 |
Q |
| |
|
||| || |||||||| |||| | ||| || | ||||||||||| ||||||||||| || ||||| ||||||||||||||| |
|
|
| T |
43745094 |
tggtctggaaaagagaactaactctgtgcgagga-agaaatattttcatctttgacctgggtggtgggacttttgatgtgtct |
43745013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 12 - 312
Target Start/End: Original strand, 16657236 - 16657536
Alignment:
| Q |
12 |
tgctgaagaaatatcatctgtgattctctcaaagatgcgagagattgcagaggcttttctgcagacacctgttaagaatgcagtgatttctgtgcctgct |
111 |
Q |
| |
|
|||||| |||||||||||| |||| || ||||||||||||| |||| ||||| ||| || || | ||||| |||||||| || || ||||||| ||| |
|
|
| T |
16657236 |
tgctgaggaaatatcatctatgatccttacaaagatgcgagaagttgctgaggcatttatggagtcgcctgtcaagaatgctgttgttactgtgccagct |
16657335 |
T |
|
| Q |
112 |
tattttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgcagataatcaatgaaccgactgcggcggctcttg |
211 |
Q |
| |
|
|| || |||||||| || |||| |||||| | |||||| ||||| || ||||| || |||||||| | || ||||||||||| ||||| || ||| ||| |
|
|
| T |
16657336 |
tacttcaatgattcgcagcgaaaagccaccatagatgctggtgccatcgctggccttaatgtcattcgaattatcaatgaacctactgctgcagctattg |
16657435 |
T |
|
| Q |
212 |
cgtatggccttcaaaagagagctaattgtgttgataagagaaatatttttatctttgaccttggcggtggaacttttgatgtgtctattctcacagttaa |
311 |
Q |
| |
|
| ||||| ||| | |||||| | |||||| || ||| | ||||||||| ||||||||||||||||||| ||||||||||||||||| || ||| |||| |
|
|
| T |
16657436 |
catatggtcttgacaagagaagtgattgtgatggtaaacggaatatttttgtctttgaccttggcggtggtacttttgatgtgtctatccttacaattaa |
16657535 |
T |
|
| Q |
312 |
g |
312 |
Q |
| |
|
| |
|
|
| T |
16657536 |
g |
16657536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 12 - 297
Target Start/End: Complemental strand, 7542675 - 7542390
Alignment:
| Q |
12 |
tgctgaagaaatatcatctgtgattctctcaaagatgcgagagattgcagaggcttttctgcagacacctgttaagaatgcagtgatttctgtgcctgct |
111 |
Q |
| |
|
||||||||| |||||||| || | ||| ||||||||||||| ||||| ||| | | | | | ||| |||| | ||||||||| || |||| |||||| |
|
|
| T |
7542675 |
tgctgaagaggtatcatctatggtactcacaaagatgcgagaaattgctgagtcgtatttagaaacaactgtgacgaatgcagttgttactgtacctgct |
7542576 |
T |
|
| Q |
112 |
tattttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgcagataatcaatgaaccgactgcggcggctcttg |
211 |
Q |
| |
|
|||||||||||||| ||||||| |||||||| |||||| ||||| |||||||| |||||||| ||| | ||| |||||||| ||||| || ||| ||| |
|
|
| T |
7542575 |
tattttaatgattctcaacgaaaagccactatagatgcgggtgccattgctggcctcaatgttatgagggcaatgaatgaacctactgccgcagctgttg |
7542476 |
T |
|
| Q |
212 |
cgtatggccttcaaaagagagctaattgtgttgataagagaaatatttttatctttgaccttggcggtggaacttttgatgtgtct |
297 |
Q |
| |
|
| ||||||||| | |||||| || ||| || || || ||||||||||| | ||||| ||||||||||| ||||||||||||||| |
|
|
| T |
7542475 |
catatggccttgacaagagaactgattatgatggagagcgaaatatttttgtttttgatcttggcggtggcacttttgatgtgtct |
7542390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 109 - 312
Target Start/End: Complemental strand, 11999746 - 11999543
Alignment:
| Q |
109 |
gcttattttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgcagataatcaatgaaccgactgcggcggctc |
208 |
Q |
| |
|
|||||||||| |||||| ||||||| |||||||| |||||| |||||||||||||| ||||||| || | |||| |||||||| ||||| || || |
|
|
| T |
11999746 |
gcttattttagtgattctcaacgaaaagccactatagatgccggtgcaattgctggcatcaatgttataagggtaatgaatgaacccactgctgcaactg |
11999647 |
T |
|
| Q |
209 |
ttgcgtatggccttcaaaagagagctaattgtgttgataagagaaatatttttatctttgaccttggcggtggaacttttgatgtgtctattctcacagt |
308 |
Q |
| |
|
|||| ||||||||| | ||||||||| ||||||||| | ||||| ||||| ||||||| ||||||||||| ||||||||| ||||||| || ||| | |
|
|
| T |
11999646 |
ttgcatatggccttgacaagagagctgattgtgttggagaaagaaacattttagtctttgatcttggcggtggcacttttgatttgtctatactaacaat |
11999547 |
T |
|
| Q |
309 |
taag |
312 |
Q |
| |
|
|||| |
|
|
| T |
11999546 |
taag |
11999543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 12 - 299
Target Start/End: Original strand, 12245125 - 12245412
Alignment:
| Q |
12 |
tgctgaagaaatatcatctgtgattctctcaaagatgcgagagattgcagaggcttttctgcagacacctgttaagaatgcagtgatttctgtgcctgct |
111 |
Q |
| |
|
|||||||||| |||||||| || | || ||||||||||||| ||||| ||||| | | | | |||| || |||||||| || || |||| |||||| |
|
|
| T |
12245125 |
tgctgaagaagtatcatctatggtactaacaaagatgcgagaaattgctgaggcatatttagaatcaccggtaaagaatgctgttgttactgtacctgct |
12245224 |
T |
|
| Q |
112 |
tattttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgcagataatcaatgaaccgactgcggcggctcttg |
211 |
Q |
| |
|
||||||| |||||| || |||| ||| || | |||||| || ||||||||||||||||||| ||| | |||| |||||||| ||||| || ||| ||| |
|
|
| T |
12245225 |
tattttagtgattctcagcgaaaagcaacgatagatgctggctcaattgctggtctcaatgttatgagggtaatgaatgaacccactgctgcagctgttg |
12245324 |
T |
|
| Q |
212 |
cgtatggccttcaaaagagagctaattgtgttgataagagaaatatttttatctttgaccttggcggtggaacttttgatgtgtctat |
299 |
Q |
| |
|
| ||||||||| ||||||||||| ||||||||| | ||||| |||||| | ||||| ||||| ||||| |||||||| || ||||| |
|
|
| T |
12245325 |
catatggccttgaaaagagagctgattgtgttggagaaagaaacatttttgtgtttgatcttggtggtggcacttttgacgtttctat |
12245412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 56 - 311
Target Start/End: Original strand, 16661755 - 16662010
Alignment:
| Q |
56 |
ttgcagaggcttttctgcagacacctgttaagaatgcagtgatttctgtgcctgcttattttaatgattcccaacgaagagccactaaagatgcaggtgc |
155 |
Q |
| |
|
|||||||||||| | || | |||| ||||| |||||||| | |||| |||||||||||||| ||||| || |||| |||||| | ||||| ||||| |
|
|
| T |
16661755 |
ttgcagaggcttatttggaatcaccggttaaaaatgcagttgtcactgttcctgcttattttaacgattctcagcgaaaagccaccatggatgctggtgc |
16661854 |
T |
|
| Q |
156 |
aattgctggtctcaatgtcatgcagataatcaatgaaccgactgcggcggctcttgcgtatggccttcaaaagagagctaattgtgttgataagagaaat |
255 |
Q |
| |
|
|||||||| || || || || ||||||||||||||| ||||| || ||| |||| ||||||||| | || ||| |||||||| || | | |||||| |
|
|
| T |
16661855 |
cattgctggccttaacgttgtgaggataatcaatgaacccactgcagcagctattgcatatggccttgacaaaagaagtaattgtgatggtgaaagaaat |
16661954 |
T |
|
| Q |
256 |
atttttatctttgaccttggcggtggaacttttgatgtgtctattctcacagttaa |
311 |
Q |
| |
|
|||||| ||||||| ||||| ||||| ||||||||||||||| | |||||| |||| |
|
|
| T |
16661955 |
atttttgtctttgatcttggtggtgggacttttgatgtgtctctcctcacaattaa |
16662010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 297
Target Start/End: Original strand, 12258365 - 12258585
Alignment:
| Q |
77 |
cacctgttaagaatgcagtgatttctgtgcctgcttattttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcat |
176 |
Q |
| |
|
|||| |||||||||||||| || |||||||||| ||||||| |||||| ||| | | |||||||| ||||| ||| |||| ||| || ||||| || |
|
|
| T |
12258365 |
cacccgttaagaatgcagttgttactgtgcctgcatattttagtgattcacaaaggaaagccactatagatgtgggtaatattgttggcctgaatgttat |
12258464 |
T |
|
| Q |
177 |
gcagataatcaatgaaccgactgcggcggctcttgcgtatggccttcaaaagagagctaattgtgttgataagagaaatatttttatctttgaccttggc |
276 |
Q |
| |
|
| ||||| | |||||||| ||||| || ||| |||| ||||||||| | || ||| ||||||||| || || | ||||||||| ||||||| ||||| |
|
|
| T |
12258465 |
gaagatattaaatgaacctactgctgcagcttttgcatatggccttgacaaaagaattaattgtgtcgaaaaacggaatatttttgtctttgatcttggt |
12258564 |
T |
|
| Q |
277 |
ggtggaacttttgatgtgtct |
297 |
Q |
| |
|
||||| ||||||||||||||| |
|
|
| T |
12258565 |
ggtggcacttttgatgtgtct |
12258585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 82 - 297
Target Start/End: Complemental strand, 12235068 - 12234853
Alignment:
| Q |
82 |
gttaagaatgcagtgatttctgtgcctgcttattttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgcaga |
181 |
Q |
| |
|
|||||||||||||| || | |||||||||||||| |||||||| ||||||| ||| |||| |||||| |||| |||||||| |||||||| ||| | |
|
|
| T |
12235068 |
gttaagaatgcagttgttaccgtgcctgcttatttcaatgattctcaacgaaaagcaactatagatgctggtgtcattgctggcctcaatgttatgaggg |
12234969 |
T |
|
| Q |
182 |
taatcaatgaaccgactgcggcggctcttgcgtatggccttcaaaagagagctaattgtgttgataagagaaatatttttatctttgaccttggcggtgg |
281 |
Q |
| |
|
|||| || ||||| | || || ||| |||| ||||| ||| | |||||| || ||||||||| | ||||||||||| | ||||| || |||||||| |
|
|
| T |
12234968 |
taatgaacgaacccatggcagccgctgttgcatatggtcttgacaagagaactgattgtgttggagaacgaaatatttttgtttttgatctcggcggtgg |
12234869 |
T |
|
| Q |
282 |
aacttttgatgtgtct |
297 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
12234868 |
cacttttgatgtgtct |
12234853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 312
Target Start/End: Complemental strand, 43625691 - 43625561
Alignment:
| Q |
182 |
taatcaatgaaccgactgcggcggctcttgcgtatggccttcaaaagagagctaattgtgttgataagagaaatatttttatctttgaccttggcggtgg |
281 |
Q |
| |
|
||||||||||||| || || || ||||| || || |||||| | |||||| ||||||||||| | |||||||||| |||||||||||||| ||||| |
|
|
| T |
43625691 |
taatcaatgaaccaacagctgctgctctagcatacggccttaacaagagaattaattgtgttggagaacgaaatattttcatctttgaccttggtggtgg |
43625592 |
T |
|
| Q |
282 |
aacttttgatgtgtctattctcacagttaag |
312 |
Q |
| |
|
||||||||||||||||| || ||| ||||| |
|
|
| T |
43625591 |
tacttttgatgtgtctatacttacaattaag |
43625561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 80 - 297
Target Start/End: Complemental strand, 14703789 - 14703572
Alignment:
| Q |
80 |
ctgttaagaatgcagtgatttctgtgcctgcttattttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgca |
179 |
Q |
| |
|
|||||||||||||||| || | |||||||||||||||| |||||| ||| ||| |||||||| ||||| |||| ||||| || |||||||| ||| |
|
|
| T |
14703789 |
ctgttaagaatgcagttgttacggtgcctgcttattttagtgattctcaaagaaaagccactatggatgctggtgttattgccggcctcaatgttatgag |
14703690 |
T |
|
| Q |
180 |
gataatcaatgaaccgactgcggcggctcttgcgtatggccttcaaaagagagctaattgtgttgataagagaaatatttttatctttgaccttggcggt |
279 |
Q |
| |
|
| |||| |||||||| || || || ||| |||| ||||||||| | |||||| || ||| || || | | ||||| ||| ||||||| ||||| ||| |
|
|
| T |
14703689 |
ggtaatgaatgaacctacagctgcagctattgcatatggccttgacaagagaactgattatggtggagaacgtaatatatttgtctttgatcttggtggt |
14703590 |
T |
|
| Q |
280 |
ggaacttttgatgtgtct |
297 |
Q |
| |
|
|| |||||||| |||||| |
|
|
| T |
14703589 |
ggtacttttgacgtgtct |
14703572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 82 - 305
Target Start/End: Complemental strand, 30775631 - 30775408
Alignment:
| Q |
82 |
gttaagaatgcagtgatttctgtgcctgcttattttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgcaga |
181 |
Q |
| |
|
||||| |||||||| || |||||||||||||||| |||||| | || |||| |||||||| ||||| ||||| ||||||||||| ||||| ||| | |
|
|
| T |
30775631 |
gttaaaaatgcagttatcactgtgcctgcttatttcaatgatgcacagcgaaaagccactatggatgctggtgccattgctggtcttaatgttatgagaa |
30775532 |
T |
|
| Q |
182 |
taatcaatgaaccgactgcggcggctcttgcgtatggccttcaaaagagagctaattgtgttgataagagaaatatttttatctttgaccttggcggtgg |
281 |
Q |
| |
|
|||| ||||| || ||||| || ||| |||| ||||| ||| | ||||||| || |||| || | |||| ||||||||| ||||||| ||||| ||||| |
|
|
| T |
30775531 |
taattaatgagcccactgcagcagctattgcatatggacttgagaagagaggtaggtgtgatgctgagaggaatatttttgtctttgatcttggtggtgg |
30775432 |
T |
|
| Q |
282 |
aacttttgatgtgtctattctcac |
305 |
Q |
| |
|
||||||||||||||| ||||||| |
|
|
| T |
30775431 |
gacttttgatgtgtctcttctcac |
30775408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 80 - 293
Target Start/End: Complemental strand, 35132829 - 35132616
Alignment:
| Q |
80 |
ctgttaagaatgcagtgatttctgtgcctgcttattttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgca |
179 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||| |||||| ||||||| |||||||| |||||| ||||| |||||||||| |||||| ||| | |
|
|
| T |
35132829 |
ctgttaagaatgcagttgttactgtgcctgcttattttagtgattctcaacgaaaagccactatagatgctggtgctattgctggtcccaatgttatg-a |
35132731 |
T |
|
| Q |
180 |
ga-taatcaatgaaccgactgcggcggctcttgcgtatggccttcaaaagagagctaattgtg-ttgataagagaaatatttttatctttgaccttggcg |
277 |
Q |
| |
|
|| |||| |||||||| ||||| || || |||| ||||||||| | |||||| || |||||| | || || | |||||||||| |||| || ||||| | |
|
|
| T |
35132730 |
gagtaatgaatgaacctactgccgcagcggttgcatatggccttgacaagagatctgattgtgctggagaaca-aaatatttttgtcttcgatcttggtg |
35132632 |
T |
|
| Q |
278 |
gtggaacttttgatgt |
293 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
35132631 |
gtggcacttttgatgt |
35132616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 103 - 312
Target Start/End: Original strand, 9335701 - 9335910
Alignment:
| Q |
103 |
gtgcctgcttattttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgcagataatcaatgaaccgactgcgg |
202 |
Q |
| |
|
||||| ||||| || |||||||| || |||| ||||| | |||||| ||| | |||||||| || |||||||| | ||||||||||||||| ||||| | |
|
|
| T |
9335701 |
gtgccagcttacttcaatgattctcagcgaaaggccaccatagatgctggtactattgctggccttaatgtcattcggataatcaatgaacctactgctg |
9335800 |
T |
|
| Q |
203 |
cggctcttgcgtatggccttcaaaagagagctaattgtgttgataagagaaatatttttatctttgaccttggcggtggaacttttgatgtgtctattct |
302 |
Q |
| |
|
| ||| |||| ||||||||| | |||||| | | |||| || ||| ||||||||||| ||||||| || || || || ||||||||||||||||| || |
|
|
| T |
9335801 |
cagctattgcatatggccttgataagagaaatgactgtgatggtaaccgaaatatttttgtctttgatctgggtggcggtacttttgatgtgtctatcct |
9335900 |
T |
|
| Q |
303 |
cacagttaag |
312 |
Q |
| |
|
|||| ||||| |
|
|
| T |
9335901 |
cacaattaag |
9335910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 12 - 297
Target Start/End: Original strand, 34466512 - 34466797
Alignment:
| Q |
12 |
tgctgaagaaatatcatctgtgattctctcaaagatgcgagagattgcagaggcttttctgcagacacctgttaagaatgcagtgatttctgtgcctgct |
111 |
Q |
| |
|
|||||| ||||| |||||| |||| || ||||||||||| || | |||||||| | | || | |||| ||||||||||||| || | ||||||||| |
|
|
| T |
34466512 |
tgctgaggaaatctcatctatgatcctttcaaagatgcgggatactgcagaggaatatttggaatcaccaattaagaatgcagttatcaccgtgcctgct |
34466611 |
T |
|
| Q |
112 |
tattttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgcagataatcaatgaaccgactgcggcggctcttg |
211 |
Q |
| |
|
|||||||||||||| || |||| ||| ||| ||||| ||| | |||||||| || ||||| |||| |||||||||||||| ||||| || ||| ||| |
|
|
| T |
34466612 |
tattttaatgattctcagcgaaaagctactgtggatgctggtactattgctggccttaatgttttgcaaataatcaatgaacccactgctgcagctattg |
34466711 |
T |
|
| Q |
212 |
cgtatggccttcaaaagagagctaattgtgttgataagagaaatatttttatctttgaccttggcggtggaacttttgatgtgtct |
297 |
Q |
| |
|
| ||||| ||| | ||||||||| | | ||| || | |||||||||| ||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
34466712 |
catatggacttgacaagagagctgactttgtggaagaaggaaatattttcgtctttgaccttggtggtgggacttttgatgtgtct |
34466797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 12 - 312
Target Start/End: Complemental strand, 15595488 - 15595183
Alignment:
| Q |
12 |
tgctgaagaaatatcatctgtgattctctcaaagatgcgagagattgcagaggcttttctgcagacacctgttaagaatgcagtgatttctgtgcctgct |
111 |
Q |
| |
|
|||||| |||||||| ||| |||||||| ||||||||||||| |||||||| ||| | || | || || || |||||||| || | ||||||||| |
|
|
| T |
15595488 |
tgctgaggaaatatcgtctatgattctcaaaaagatgcgagaggttgcagagaaattttt--agtctcccgtaaacaatgcagttgttaccgtgcctgct |
15595391 |
T |
|
| Q |
112 |
tattttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgcagataatcaatgaacc-------gactgcggcg |
204 |
Q |
| |
|
||| | |||||||| ||||||| |||||||| |||||||||||| |||||||| || ||||| || | | ||||||||||||| ||| || || |
|
|
| T |
15595390 |
tatctcaatgattctcaacgaaaagccactatagatgcaggtgccattgctggccttaatgttatacgggtaatcaatgaaccgacagctgacagctgca |
15595291 |
T |
|
| Q |
205 |
gctcttgcgtatggccttcaaaagagagctaattgtgttgataagagaaatatttttatctttgaccttggcggtggaacttttgatgtgtctattctca |
304 |
Q |
| |
|
||| |||| ||||||||| | ||||| ||| ||||||| | |||||||||||| ||||||| ||||| ||||| ||||||||||||||||| || | |
|
|
| T |
15595290 |
gctattgcatatggccttgacaagaggattaactgtgttggagaaagaaatatttttgtctttgatcttggtggtggcacttttgatgtgtctatcctaa |
15595191 |
T |
|
| Q |
305 |
cagttaag |
312 |
Q |
| |
|
|| ||||| |
|
|
| T |
15595190 |
caattaag |
15595183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 299
Target Start/End: Original strand, 4678366 - 4678564
Alignment:
| Q |
101 |
ctgtgcctgcttattttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgcagataatcaatgaaccgactgc |
200 |
Q |
| |
|
|||||||||| || || |||||||| ||||||| ||| || | |||||| ||||| |||||||| || |||||||| || |||||||| ||||| |||| |
|
|
| T |
4678366 |
ctgtgcctgcatacttcaatgattctcaacgaaaagctaccatagatgctggtgccattgctggacttaatgtcattcaaataatcaacgaacctactgt |
4678465 |
T |
|
| Q |
201 |
ggcggctcttgcgtatggccttcaaaagagagctaattgtgttgataagagaaatatttttatctttgaccttggcggtggaacttttgatgtgtctat |
299 |
Q |
| |
|
|| ||| |||| ||||| || | |||||| | | ||| | ||| ||||||| ||| ||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
4678466 |
tgcagctattgcatatggttttgacaagagaagtgaaagtgattgtaaacgaaatatatttgtctttgaccttggtggtggtacttttgatgtgtctat |
4678564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 28220396 - 28220194
Alignment:
| Q |
16 |
gaagaaatatcatctgtgattctctcaaagatgcgagagattgcagaggcttttctgcagacacctgttaagaatgcagtgatttctgtgcctgcttatt |
115 |
Q |
| |
|
|||||||| |||||| || |||| |||||||||| |||||||||||||| ||| || | ||||| ||||||||||| ||| ||||||||||||||| |
|
|
| T |
28220396 |
gaagaaatctcatctatggttctaacaaagatgcgtgagattgcagaggcctttttggaatttcctgtcaagaatgcagttattactgtgcctgcttatt |
28220297 |
T |
|
| Q |
116 |
ttaatgattcccaacgaagagccactaaagatgcaggtgcaattgctggtctcaatgtcatgcagataatcaatgaaccgactgcggcggctcttgcgta |
215 |
Q |
| |
|
| ||||||| || || | |||||| | |||||||||| | ||||||||||| ||||| | |||| |||||||||| ||||| || ||| |||| || |
|
|
| T |
28220296 |
tcaatgattatcagcggaaagccaccatagatgcaggtaccattgctggtctaaatgttctaaggatagtcaatgaacccactgctgctgctattgcata |
28220197 |
T |
|
| Q |
216 |
tgg |
218 |
Q |
| |
|
||| |
|
|
| T |
28220196 |
tgg |
28220194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 200
Target Start/End: Original strand, 42555762 - 42555827
Alignment:
| Q |
135 |
agccactaaagatgcaggtgcaattgctggtctcaatgtcatgcagataatcaatgaaccgactgc |
200 |
Q |
| |
|
|||||| | |||||||||| | ||||||||||| ||||| ||| |||||||||||||||| ||||| |
|
|
| T |
42555762 |
agccacaatagatgcaggtactattgctggtctgaatgttatgaagataatcaatgaacccactgc |
42555827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 297
Target Start/End: Complemental strand, 28220161 - 28220115
Alignment:
| Q |
251 |
gaaatatttttatctttgaccttggcggtggaacttttgatgtgtct |
297 |
Q |
| |
|
|||||||||| ||||||||||| || ||||| ||||||||||||||| |
|
|
| T |
28220161 |
gaaatattttcatctttgacctgggtggtgggacttttgatgtgtct |
28220115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 28911031 - 28910982
Alignment:
| Q |
12 |
tgctgaagaaatatcatctgtgattctctcaaagatgcgagagattgcag |
61 |
Q |
| |
|
|||||| ||||| ||||||||| ||||||||||||| || |||||||||| |
|
|
| T |
28911031 |
tgctgaggaaatctcatctgtggttctctcaaagattcgcgagattgcag |
28910982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University