View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21267_low_7 (Length: 323)
Name: NF21267_low_7
Description: NF21267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21267_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 32326145 - 32326290
Alignment:
| Q |
19 |
gtttccaacccaacactgtgaaagatcactgtaactatgctgttaatagctattaccagagaaagggtaatgttcaaggtagttgtgattttgctggagc |
118 |
Q |
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| T |
32326145 |
gtttccaacccaacactgtgaaagatcactgtaactatgctgttaatagctattaccagagaaagggtaatgttcaaggtagttgtgattttgctggagc |
32326244 |
T |
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| Q |
119 |
tgcagcacctactcaaacaccaccaagtaagtactcttctttattc |
164 |
Q |
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| T |
32326245 |
tgcagcacctactcaaacaccaccaagtaagtactcttctttattc |
32326290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 32326376 - 32326438
Alignment:
| Q |
249 |
cagctgcagcatctggatgtgtttacccttcaagtccagg---gtatgttttttcataatgat |
308 |
Q |
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| T |
32326376 |
cagctgcagcatctggatgtgtttacccttcaagtccagggtagtatgttttttcataatgat |
32326438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 19552077 - 19552153
Alignment:
| Q |
39 |
aaagatcactgtaactatgctgttaatagctattaccagagaaagggtaatgttcaaggtagttgtgattttgctgg |
115 |
Q |
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| T |
19552077 |
aaagatcactgcaattatgctgttaatagctatttccagaaaaagggtcaagctcaaggagcttgtgattttgctgg |
19552153 |
T |
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