View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21267_low_8 (Length: 290)
Name: NF21267_low_8
Description: NF21267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21267_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 4 - 281
Target Start/End: Complemental strand, 51417964 - 51417687
Alignment:
| Q |
4 |
ttttattgtgatcgtccttctttttccattctttcaatgttattggaactccttttaattaattaatttttctttggcatgctttaaatttgttaatttt |
103 |
Q |
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| T |
51417964 |
ttttattgtgatcgtccttctttttccattctttctatgttattggaactccttttaattaattaatttttctttggcatgctttaaatttgttaatttt |
51417865 |
T |
|
| Q |
104 |
cgttagttgagacaatttaattaaatgtgtctttgaacaagttctgtcttggtgctaaagagttcaaactggtataaagaagcttatcggcaattaaaag |
203 |
Q |
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| T |
51417864 |
cgttagttgagacaatttaattaaatgtgtctttgaacaagttctgtcttggtgctaaagagttcaaactggtataaagaagcttatcggcaattaaaag |
51417765 |
T |
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| Q |
204 |
ttagtaaaatgattcgatcgaaattgatatcacacaccaaaaaggggtggagactttgttatctctgacccacatatt |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51417764 |
ttagtaaaatgattcgatcgaaattgatatcacacaccaaaaaggggtggagactttgttatctctgacccacatatt |
51417687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 4 - 281
Target Start/End: Complemental strand, 29323615 - 29323346
Alignment:
| Q |
4 |
ttttattgtgatcgtccttctttttccattctttcaatgttattggaactccttttaattaattaatttttctttggcatgctttaaatttgttaatttt |
103 |
Q |
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||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
29323615 |
ttttattgtgactgtccttctttttcctttctttctatgttattggaactccttttaattaatttatttttctttggcatgcttt------gttaatttt |
29323522 |
T |
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| Q |
104 |
cgttagttgagacaatttaattaaatgtgtctttgaacaagttctgtcttggtgctaaagagttcaaactggtataaagaagcttatcggcaattaaaag |
203 |
Q |
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|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||| |
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| T |
29323521 |
cgttagttga--caatttaattaaatgtgtccttgaacaagttctgtcttggtgctaaagagttcaaagtggtataaagaaacttatcagcaattaaaag |
29323424 |
T |
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| Q |
204 |
ttagtaaaatgattcgatcgaaattgatatcacacaccaaaaaggggtggagactttgttatctctgacccacatatt |
281 |
Q |
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|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29323423 |
ttagtaaaatgattcgattgaaattgacttcacacaccaaaaaggggtggagactttgttatctctgacccacatatt |
29323346 |
T |
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