View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21268_low_1 (Length: 415)
Name: NF21268_low_1
Description: NF21268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21268_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 4e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 172 - 400
Target Start/End: Original strand, 39997340 - 39997565
Alignment:
| Q |
172 |
accaatatctcaagtacattcattggtattctccataaaataaaagaggtcacccttcattaccacgtaagatgcatggagtattttataatggtagcat |
271 |
Q |
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| T |
39997340 |
accaatatctcaagtacattcattggtattctccataaaataaaagaggtcatcc---attaccacgtaagatgcatggagtattttataatggtaccat |
39997436 |
T |
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| Q |
272 |
tataatggagttttcaaaaacat-aaaatgattttacttattataatggtaccatgaggtattttnnnnnnnnnttattcggtaccacgaggtgatcatg |
370 |
Q |
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| T |
39997437 |
tataatggagttttcaaaaacataaaaatgatttgccttattataatggtaccatgaggtatttt-aaaaaaaattattcggtaccacgaggtgatcatg |
39997535 |
T |
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| Q |
371 |
catggagtttaaaaaacaaatcggtatcag |
400 |
Q |
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| T |
39997536 |
catggagtttaaaaaacaaatcggtatcag |
39997565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 39997182 - 39997277
Alignment:
| Q |
17 |
taggaaaatatggatagattaaataagagttttgctaactagtagaacattggttaaggaatacat---tagaatctttgctttgaaaaatataag |
109 |
Q |
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| T |
39997182 |
taggaaaatatggatagattaaataagagttttgctaactagtaggacattggttaaggaatacattaatagaatctttgctttgaaaaatataag |
39997277 |
T |
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