View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21268_low_2 (Length: 366)
Name: NF21268_low_2
Description: NF21268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21268_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 15 - 347
Target Start/End: Original strand, 52747354 - 52747686
Alignment:
| Q |
15 |
agcacagagattcataagacgaagatcaaagaggaatgaaagggattttgagtgtgtttacctttgcgatcgggtttgtggcatcgcttgacgagcctta |
114 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52747354 |
agcacagagattcataagacgaaaatcaaagagaaatgaaagggattttgagtttgtttacctttgcgatcgggtttgtggcatcgcttgacgagcctta |
52747453 |
T |
|
| Q |
115 |
cgctgtccttagcgaattctctgagtggatcgaaaacagaatcaatggcgtccattttctttcgatctgagaattgaaacaaattggataattaattaag |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52747454 |
cgctgtccttagcgaattctctgagtggatcgaaaacagaatcaatggcgtccattttctttcgatctgagaattgaaacaaattggataattaattaag |
52747553 |
T |
|
| Q |
215 |
agattcgattaagaattttcaagagaccaaaaaatctagatcgaaatcaaaggcaacagaatcaatttttctattcaaagtaaataaaataaaaagccta |
314 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52747554 |
agattcgattaagaattttcaagagacgaaaaaatctagatcgaaatcaaaggcaacagaatcaatttttctattcaaagtaaataaaataaaaagccta |
52747653 |
T |
|
| Q |
315 |
ataatcgaagtcttagtggagaagagaagatac |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
52747654 |
ataatcgaagtcttagtggagaagagaagatac |
52747686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 73 - 174
Target Start/End: Original strand, 36280649 - 36280750
Alignment:
| Q |
73 |
tacctttgcgatcgggtttgtggcatcgcttgacgagccttacgctgtccttagcgaattctctgagtggatcgaaaacagaatcaatggcgtccatttt |
172 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||| |||||||| || ||||||||||||||||||||||| || ||||||||||| |||||||| |
|
|
| T |
36280649 |
tacctttgcgatcgggtttgtggcaacgcttaacgagcctaacgctgtctttggcgaattctctgagtggatcgaagacggaatcaatggcatccatttt |
36280748 |
T |
|
| Q |
173 |
ct |
174 |
Q |
| |
|
|| |
|
|
| T |
36280749 |
ct |
36280750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University