View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21268_low_3 (Length: 339)
Name: NF21268_low_3
Description: NF21268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21268_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 26665090 - 26664762
Alignment:
| Q |
1 |
attgtgatgttttgatttttgacaggcagggatgagaatagaagagaaaggagatctgattttaagaagaaactgctcaatgcattttcaaagtttaagc |
100 |
Q |
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| T |
26665090 |
attgtgatgttttggtttttgacaggcagtgatgagaatagaaaagaaaggagatctgattttaagaagaaactgctcaatgcattttcaaagtttaagc |
26664991 |
T |
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| Q |
101 |
attctttcaagaaaaagcgtgttgatgagttacaggctgttgatgttgttcctgctgttgttgatgcgtttcggaaatcgttgatcatggatgaattgct |
200 |
Q |
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| T |
26664990 |
attctttcaagaaaaagcgtgttgatgagttacaggctgttaatgttgttcctgctgttgttgatgcgtttcggaaattgttgatcatggatgaattgct |
26664891 |
T |
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| Q |
201 |
tcctcagaagcacgatgattatcacatgatgttaaggtgccctatattgaccgtgttattgaatagcggctccagcgatgttataacactgcattatagc |
300 |
Q |
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| T |
26664890 |
tcctcagaagcacgatgattatcacatgatgttaaggtgccctatattgaccgtgttattgaatagcggctccagcgatgttataacactgcattatagc |
26664791 |
T |
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| Q |
301 |
ggaatttaaataaaccactattttctgtg |
329 |
Q |
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| T |
26664790 |
ggaatttaaataaaccactattttctgtg |
26664762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 150 - 258
Target Start/End: Complemental strand, 26658777 - 26658669
Alignment:
| Q |
150 |
tcctgctgttgttgatgcgtttcggaaatcgttgatcatggatgaattgcttcctcagaagcacgatgattatcacatgatgttaaggtgccctatattg |
249 |
Q |
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| T |
26658777 |
tcctgctgttgttgatgcctttcggaaatcgttgatcatggatgaattgcttcccgagaagcacgatgattatcataagatgttaaggtgccgtatattg |
26658678 |
T |
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| Q |
250 |
accgtgtta |
258 |
Q |
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| T |
26658677 |
gtcgtgtta |
26658669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 26644055 - 26643999
Alignment:
| Q |
147 |
tgttcctgctgttgttgatgcgtttcggaaatcgttgatcatggatgaattgcttcc |
203 |
Q |
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| T |
26644055 |
tgttcctgctgctgttgatgcttttcggcaatcgttgatcatcgatgaattgcttcc |
26643999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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