View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21268_low_5 (Length: 303)
Name: NF21268_low_5
Description: NF21268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21268_low_5 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 303
Target Start/End: Complemental strand, 39997157 - 39996873
Alignment:
| Q |
19 |
tctaatgaacttttaatctcacaaactgaatttagaaaacacttgtgagagcaacattaaataaagcaaacaagtcatcacttttttggggtggaacgtc |
118 |
Q |
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| T |
39997157 |
tctaatgaacttttaatctcacaaactgaatttagaaaacacttgtgagagcaacattaaataaagcaaacaagtcatcacttttttggggtggaacgtc |
39997058 |
T |
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| Q |
119 |
aaaaagagggtgagacaatctttgtgttctaaaacatgccatcttcaacatcaacatcagtagcattcaaaagctgttactatgtgagaccaatggaacc |
218 |
Q |
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| T |
39997057 |
aaaaagagggtgagacaatctttgtgttctaaaacatgccatcttcaacatcaacatcagtagcattcaaaggctgttactatgtgagaccaatggaacc |
39996958 |
T |
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| Q |
219 |
aacatggtgtggccgtttaccattatccgaatgggatcagattggaatcatagcacacgtgccaacaatatacttttaccagccc |
303 |
Q |
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| T |
39996957 |
aacatggtgtggccgtttaccattatccgaatgggatcagattggaatcatagcacacgtgccaacaatatacttttaccagccc |
39996873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 177 - 298
Target Start/End: Original strand, 53036596 - 53036717
Alignment:
| Q |
177 |
agtagcattcaaaagctgttactatgtgagaccaatggaaccaacatggtgtggccgtttaccattatccgaatgggatcagattggaatcatagcacac |
276 |
Q |
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|||| |||| ||||| ||||||| |||||||||||||||||||||||||| ||| || ||||||||||||||||||||||| ||||||| |||| ||||| |
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| T |
53036596 |
agtaacattgaaaagttgttactctgtgagaccaatggaaccaacatggtatggtcgattaccattatccgaatgggatcaaattggaaacataacacac |
53036695 |
T |
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| Q |
277 |
gtgccaacaatatacttttacc |
298 |
Q |
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| T |
53036696 |
gtttcaacaatttacttttacc |
53036717 |
T |
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