View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21268_low_6 (Length: 298)

Name: NF21268_low_6
Description: NF21268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21268_low_6
NF21268_low_6
[»] chr4 (1 HSPs)
chr4 (18-298)||(26665091-26665371)


Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 26665371 - 26665091
Alignment:
Q  18 aaataaaaaacatgagacgtgcggtggagagtgaagagtaacatgttataacaaaacagactagtgtttgtgtgaaagtgaaagnnnnnnnncagaacag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||        ||||||||    
T  26665371 aaataaaaaacatgagacgtgcggtggagagtgaagagtaacatgttataacaaaacagactagtgtttgcgtgaaagtgaaagaaaaagaacagaacag 26665272  T
Q  118 tgtcgttgaaatggaagatccattacaatctcgtgattctgtaacattttcttcttcaggtaccagacatgccattctttctgcattttgctcttacatt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  26665271 tgtcgttgaaatggaagatccattacaatctcgtgattctgtaacattttcttcttcaggtaccagacgtgccattctttctgcattttgctcttacatt 26665172  T
Q  218 ggtcatcgttgcatattattcattcattcttccgaaatgttacgtatgatttttgtgtttggtttggtgattgattcatct 298  Q
    | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26665171 gttcatggttgcatattattcattcattcttccgaaatgttacgtatgatttttgtgtttggtttggtgattgattcatct 26665091  T

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