View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21269_high_1 (Length: 809)
Name: NF21269_high_1
Description: NF21269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21269_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 349 - 724
Target Start/End: Original strand, 32896607 - 32896982
Alignment:
| Q |
349 |
actgcctaaatttaatttaacttgtcaannnnnnnngtcaaccttttacttttgtcattaatttgttctattattacttgaatatatgatgtatcaactt |
448 |
Q |
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| T |
32896607 |
actgcctaaatttagtttaacttgtcaattttttttgtcaaccttttacttttgtcattaatttgttctattattacttgaatatatgatgtatcaactt |
32896706 |
T |
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| Q |
449 |
ataaatttttctgttatttatttcggttagttggaaaagatcataaaagcatagcgagaacttggaaaaaagaccataaaaacatgaaaatgtagtggct |
548 |
Q |
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| T |
32896707 |
ataaatttttctgttatttatttcggttagttggaaaagatcataaaagcatagcgagaacttggaaaaaagaccataaaaacatgaaaatgtagtggct |
32896806 |
T |
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| Q |
549 |
tagggaatgcattagctagttgggaattgctgggcacaagaagtaaaacaatgaacttaaattgcaacttttctctcattacatgccaatccagctctgt |
648 |
Q |
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| T |
32896807 |
tagggaatgcattagctagttgggaattgctgggcacaagaagtaaaacaatgaacttaaattgcaacttttctctcattacatgccaatccagctctgt |
32896906 |
T |
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| Q |
649 |
gtttgcttctttcttagaatggagggttatgatatagttaaatagcatatctgctatcacaatataaaatttggaa |
724 |
Q |
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| T |
32896907 |
gtttgcttctttcttagaatggagggttatgatatagttaaatagcatatctgctatcacaatataaaatttggaa |
32896982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 9 - 355
Target Start/End: Complemental strand, 32896526 - 32896180
Alignment:
| Q |
9 |
ttgagtttagtttaataactaatcgagatacgactaatatgtctcatacgatactgataaccatgtaatttaatggatttgtctaaatggccacctaggt |
108 |
Q |
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| T |
32896526 |
ttgagtttagtttaataactaatcgagatacgactaatatgtctcatacgatactgataaccatgtaatttaatggatttgtctaaatggccacctaggt |
32896427 |
T |
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| Q |
109 |
tgtataattctggtctagactaaacttttgtcttgtaaaacaggtagcttaaaacaaactttatgaagccttgttttacacaaagcgtttacattatagc |
208 |
Q |
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| T |
32896426 |
tgtataattctggtctagactaaacttttgtcttgtaaaacaggtagcttaaaacaaactttatgaagccttgttttacacaaagcgtttacattatagc |
32896327 |
T |
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| Q |
209 |
cagaataaacctcatatcctcaagttgtgcaaattttatcatatgcacaattggatgtacattgtacatctctgctaccttaccagctaaagatacttgc |
308 |
Q |
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| T |
32896326 |
cagaataaacctcaaatcctcaagttgtgcaaattttatcatatgcacacttggatgtacattgtacatctctgctaccttaccagctaaggatgcttgc |
32896227 |
T |
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| Q |
309 |
tatattctgcattcttctacgtctccgtctccgctattgtactgcct |
355 |
Q |
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| T |
32896226 |
tatattctgcattcttctacgtctccgtctccactattgtactgcct |
32896180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 721 - 792
Target Start/End: Original strand, 32897369 - 32897440
Alignment:
| Q |
721 |
ggaacccttacatcaccttcaatgttggacaattcaatagttggattaaagggagtgttagaaggttcacca |
792 |
Q |
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| T |
32897369 |
ggaacccttacatcaccttcaatgttggacaattcaatagttggattaaagggagtgttagaaggttcacca |
32897440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 32885751 - 32885583
Alignment:
| Q |
20 |
ttaataactaatcgagatacgactaatatgtctcatacgatactgataaccatgtaatttaatggatttgtctaaatggccacct-aggttgtataattc |
118 |
Q |
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|||||| | ||||||||| |||||| |||| || || |||||| |||||||||||| | ||||||||||||||||||| | ||||| || ||||| |
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| T |
32885751 |
ttaatatcaaatcgagattcgactactatgcatcgtaagatactaataaccatgtaagt-----gatttgtctaaatggccacattaggttataaaattc |
32885657 |
T |
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| Q |
119 |
tggtctagactaaacttttgtcttgtaaaacaggtagcttaaaacaaactttatgaagccttgttttacacaaa |
192 |
Q |
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|||| ||||||||| |||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||| |
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| T |
32885656 |
tggtatagactaaatttttgtcttgtaaaactagtagctgaaaacaaactttgtgaagccttgttttacacaaa |
32885583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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