View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21269_high_12 (Length: 435)
Name: NF21269_high_12
Description: NF21269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21269_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 15 - 415
Target Start/End: Complemental strand, 1959995 - 1959595
Alignment:
| Q |
15 |
gagcacagagtggtagcaaatcatgtcggtccaagagtatcagttgcaagcttttatagcacaagttttcagccatcaacaaaactttatggtcctataa |
114 |
Q |
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| T |
1959995 |
gagcacagagtggtagcaaatcatgtcggtccaagagtatcagttgcaagcttttatagcacaagttttcagccatcaacaaaactttatggtcctataa |
1959896 |
T |
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| Q |
115 |
aggaattagtatcagaagataatcctccaaagtatagggaaacaacagtgcatgattatgtttctttctccatggcaagaggccttgatggaacttctct |
214 |
Q |
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| T |
1959895 |
aggaattagtatcagaagataatcctccaaagtatagggaaacaacagtgcatgattatgtttctttctccatggcaagaggccttgatggaacttctct |
1959796 |
T |
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| Q |
215 |
tttgccatatttcaagattggaaatttctgatacacacaacaaaggtggtttaacatgtatacaatataattaaaataactttgtagcattccatcaagt |
314 |
Q |
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| T |
1959795 |
tttgccatatttcaagattggaaatttctgatacacacaacaaaggtggtttaacatgtatacaatataattcaaataactttgtagcattccatcaagt |
1959696 |
T |
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| Q |
315 |
aagaggacagcagtgattaagattatagggatacaaacctattttcttgtggactacgagaaccttgtgaacctcatgttttgcctgattataggtaaga |
414 |
Q |
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| T |
1959695 |
aagaggacagcagtgattaagattatagggatacaaacctattttcttgtggactacgagaaccttgtgaacctcatgttttgcctgattataggtaaga |
1959596 |
T |
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| Q |
415 |
c |
415 |
Q |
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| T |
1959595 |
c |
1959595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 15 - 297
Target Start/End: Original strand, 2023330 - 2023612
Alignment:
| Q |
15 |
gagcacagagtggtagcaaatcatgtcggtccaagagtatcagttgcaagcttttatagcacaagttttcagccatcaacaaaactttatggtcctataa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2023330 |
gagcacagagtggtagcaaatcatgtcggtccaagagtatcagttgcaagcttttatagcacaagttttcagccatcaacaaaactttatggtcctataa |
2023429 |
T |
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| Q |
115 |
aggaattagtatcagaagataatcctccaaagtatagggaaacaacagtgcatgattatgtttctttctccatggcaagaggccttgatggaacttctct |
214 |
Q |
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| T |
2023430 |
aggaattagtatcagaagataatcctccaaagtatagggaaacaacagtgcatgattatgtttctttctccatggcaagaggccttgatggaacttctcc |
2023529 |
T |
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| Q |
215 |
tttgccatatttcaagattggaaatttctgatacacacaacaaaggtggtttaacatgtatacaatataattaaaataacttt |
297 |
Q |
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| T |
2023530 |
tttgccatatttcaagattggaaatttctgatacacacaataaaggtggtttaacatgtatgcaatataattaaaataacttt |
2023612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 303 - 393
Target Start/End: Original strand, 2023807 - 2023897
Alignment:
| Q |
303 |
attccatcaagtaagaggacagcagtgattaagattatagggatacaaacctattttcttgtggactacgagaaccttgtgaacctcatgt |
393 |
Q |
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|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||| |
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| T |
2023807 |
attccatcaagtcagaggacagcaacaattaagattatagggatacaaacctattttcttgaggactacaagaaccttgtgaacatcatgt |
2023897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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