View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21269_high_15 (Length: 393)
Name: NF21269_high_15
Description: NF21269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21269_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 10 - 375
Target Start/End: Complemental strand, 53677484 - 53677119
Alignment:
| Q |
10 |
gcagagaagaaatggagagaagtaggtagtgtatttagattctcatctactactacaagcgcttcttttgtactaagaaaacactatttgaatcttcttt |
109 |
Q |
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| T |
53677484 |
gcagagaagaaatggagagaagtaggtagtgtatttagattctcatctactactacaagcgcttcttttgtactaagaaaacactatttgaatcttcttt |
53677385 |
T |
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| Q |
110 |
atcattacgaacaagttcacttcttcaaagttcagggtcctgtttacaccccctcaccaggtactactgtttcactatttttatttcatttacagataat |
209 |
Q |
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| T |
53677384 |
atcattacgaacaagttcacttcttcaaagttcagggtcctgtttacaccccctcaccaggtactactgtttcactatttttatttcatttacagataat |
53677285 |
T |
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| Q |
210 |
tttaaatgaaattcatgtgtgaaatattaaaactcaactctgtttgatgtatattgcagatgcattttctggtaacagtccatcgtggaaaccggaatta |
309 |
Q |
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| T |
53677284 |
tttaaatgaaattcatgtgtgaaatattaaaactcaactctgtttgatgtatattgcagatgcattttctggtaacagtccatcttggaaaccggaatta |
53677185 |
T |
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| Q |
310 |
gctattgttcaatattcacctaaaatggtaaattatagtgctgaatctcatgatgaaggtaattta |
375 |
Q |
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| T |
53677184 |
gctattgttcaatattcacctaaaatggtaaattatagtgctgaatctcacgatgaaggtaattta |
53677119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 298
Target Start/End: Complemental strand, 32985248 - 32985088
Alignment:
| Q |
133 |
ttcaaagttcagggtcctgtttacaccccctcaccaggtactactgtttcactatttttattt-catttacagataattttaaatgaaattcatgtgtga |
231 |
Q |
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|||||||||||||||||| | ||||| |||||| |||||||| ||||||| ||||| ||| | |||| ||||| | |||||||| ||||||||| |
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| T |
32985248 |
ttcaaagttcagggtcctatatacactccctcataaggtacta---tttcactgtttttctttacgtttatagatagatataaatgaacttcatgtgtac |
32985152 |
T |
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| Q |
232 |
aatattaaaactcaactctgtttgatgtatattgcagatgcattttctggtaacagtccatcgtgga |
298 |
Q |
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||| |||||||||||| ||| |||||||||||| |||| ||||||| ||||||| ||||||| |
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| T |
32985151 |
aatcccaaaactcaactcggtt---tgtatattgcaggtgcaatttctggaaacagtcactcgtgga |
32985088 |
T |
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