View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21269_high_23 (Length: 290)

Name: NF21269_high_23
Description: NF21269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21269_high_23
NF21269_high_23
[»] chr5 (3 HSPs)
chr5 (136-274)||(18199500-18199638)
chr5 (67-100)||(6264551-6264584)
chr5 (67-100)||(34480710-34480743)
[»] chr6 (3 HSPs)
chr6 (67-100)||(8873179-8873212)
chr6 (68-100)||(13755220-13755252)
chr6 (206-246)||(31799131-31799171)
[»] chr2 (3 HSPs)
chr2 (67-100)||(26681635-26681668)
chr2 (67-100)||(9949617-9949650)
chr2 (67-95)||(31594308-31594336)
[»] chr1 (4 HSPs)
chr1 (67-100)||(37530318-37530351)
chr1 (67-100)||(14119519-14119552)
chr1 (202-246)||(2858932-2858976)
chr1 (68-100)||(3692382-3692414)
[»] chr4 (1 HSPs)
chr4 (203-249)||(45742091-45742137)
[»] chr7 (3 HSPs)
chr7 (67-100)||(30385954-30385987)
chr7 (67-100)||(45235704-45235737)
chr7 (201-249)||(18231785-18231833)
[»] chr3 (3 HSPs)
chr3 (67-100)||(25873465-25873498)
chr3 (68-100)||(29309163-29309195)
chr3 (202-250)||(34641190-34641238)
[»] chr8 (1 HSPs)
chr8 (68-100)||(16421362-16421394)


Alignment Details
Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 136 - 274
Target Start/End: Complemental strand, 18199638 - 18199500
Alignment:
Q  136 tcaaaaaggttataggtacaaagcaatttgcctcactatgtac----caaacatagaaaagcaagctagtcctcccctccctttccttccgaaactcttc 231  Q
    ||||||||||||||||||||||||||||||||||| |||||||    ||||||||||||||||||    ||||||||||||||||| |||||||||||||    
T  18199638 tcaaaaaggttataggtacaaagcaatttgcctcaatatgtacgtaccaaacatagaaaagcaag----tcctcccctccctttccctccgaaactcttc 18199543  T
Q  232 atccaaacacacccttagtcttcaatgcatcaagtgttggaag 274  Q
    ||||||||| |||||||||||||||||||||||| ||||||||    
T  18199542 atccaaacatacccttagtcttcaatgcatcaagcgttggaag 18199500  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 6264584 - 6264551
Alignment:
Q  67 aacaacccagacacatagaagccatattagttgc 100  Q
    ||||||||||||||||||||||||||||||||||    
T  6264584 aacaacccagacacatagaagccatattagttgc 6264551  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 100
Target Start/End: Original strand, 34480710 - 34480743
Alignment:
Q  67 aacaacccagacacatagaagccatattagttgc 100  Q
    ||||||||||||||||||||||||||| ||||||    
T  34480710 aacaacccagacacatagaagccatataagttgc 34480743  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 8873212 - 8873179
Alignment:
Q  67 aacaacccagacacatagaagccatattagttgc 100  Q
    ||||||||||||||||||||||||||||||||||    
T  8873212 aacaacccagacacatagaagccatattagttgc 8873179  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 100
Target Start/End: Original strand, 13755220 - 13755252
Alignment:
Q  68 acaacccagacacatagaagccatattagttgc 100  Q
    |||||||||||||||||||| ||||||||||||    
T  13755220 acaacccagacacatagaagtcatattagttgc 13755252  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 31799131 - 31799171
Alignment:
Q  206 ccctccctttccttccgaaactcttcatccaaacacaccct 246  Q
    |||||||||||| ||  ||||||||||||||||||||||||    
T  31799131 ccctccctttccctcttaaactcttcatccaaacacaccct 31799171  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 100
Target Start/End: Original strand, 26681635 - 26681668
Alignment:
Q  67 aacaacccagacacatagaagccatattagttgc 100  Q
    ||||||||||||||||||||||||||||||||||    
T  26681635 aacaacccagacacatagaagccatattagttgc 26681668  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 9949650 - 9949617
Alignment:
Q  67 aacaacccagacacatagaagccatattagttgc 100  Q
    ||||||||||||||||||||||||||| ||||||    
T  9949650 aacaacccagacacatagaagccatataagttgc 9949617  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 95
Target Start/End: Original strand, 31594308 - 31594336
Alignment:
Q  67 aacaacccagacacatagaagccatatta 95  Q
    |||||||||||||||||||||||||||||    
T  31594308 aacaacccagacacatagaagccatatta 31594336  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 100
Target Start/End: Original strand, 37530318 - 37530351
Alignment:
Q  67 aacaacccagacacatagaagccatattagttgc 100  Q
    ||||||||||||||||||||||||||||||||||    
T  37530318 aacaacccagacacatagaagccatattagttgc 37530351  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 100
Target Start/End: Original strand, 14119519 - 14119552
Alignment:
Q  67 aacaacccagacacatagaagccatattagttgc 100  Q
    ||||||||||||||||| ||||||||||||||||    
T  14119519 aacaacccagacacataaaagccatattagttgc 14119552  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 2858976 - 2858932
Alignment:
Q  202 cctcccctccctttccttccgaaactcttcatccaaacacaccct 246  Q
    |||||||||||||||| ||| |||| || ||||||||||||||||    
T  2858976 cctcccctccctttccctcctaaaccctccatccaaacacaccct 2858932  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 100
Target Start/End: Original strand, 3692382 - 3692414
Alignment:
Q  68 acaacccagacacatagaagccatattagttgc 100  Q
    ||||||||| |||||||||||||||||||||||    
T  3692382 acaacccaggcacatagaagccatattagttgc 3692414  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 45742091 - 45742137
Alignment:
Q  203 ctcccctccctttccttccgaaactcttcatccaaacacacccttag 249  Q
    |||||||||||||||  || |||| ||||||||||||||||||||||    
T  45742091 ctcccctccctttcccgcctaaacccttcatccaaacacacccttag 45742137  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 100
Target Start/End: Original strand, 30385954 - 30385987
Alignment:
Q  67 aacaacccagacacatagaagccatattagttgc 100  Q
    ||||||||||||||||||||||||||| ||||||    
T  30385954 aacaacccagacacatagaagccatataagttgc 30385987  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 100
Target Start/End: Original strand, 45235704 - 45235737
Alignment:
Q  67 aacaacccagacacatagaagccatattagttgc 100  Q
    |||||||||||||||| |||||||||||||||||    
T  45235704 aacaacccagacacatggaagccatattagttgc 45235737  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 18231785 - 18231833
Alignment:
Q  201 tcctcccctccctttccttccgaaactcttcatccaaacacacccttag 249  Q
    |||||||||||||| || ||| |||| || |||||||||||||||||||    
T  18231785 tcctcccctcccttcccctcctaaacgctccatccaaacacacccttag 18231833  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 25873498 - 25873465
Alignment:
Q  67 aacaacccagacacatagaagccatattagttgc 100  Q
    ||||||||||||||||||||||||||| ||||||    
T  25873498 aacaacccagacacatagaagccatatgagttgc 25873465  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 100
Target Start/End: Original strand, 29309163 - 29309195
Alignment:
Q  68 acaacccagacacatagaagccatattagttgc 100  Q
    |||||||||||||||||||| ||||||||||||    
T  29309163 acaacccagacacatagaagtcatattagttgc 29309195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 34641190 - 34641238
Alignment:
Q  202 cctcccctccctttccttccgaaactcttcatccaaacacacccttagt 250  Q
    ||||||||||||| || ||| |||| || ||||||||||||||||||||    
T  34641190 cctcccctcccttcccctcctaaaccctccatccaaacacacccttagt 34641238  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 100
Target Start/End: Complemental strand, 16421394 - 16421362
Alignment:
Q  68 acaacccagacacatagaagccatattagttgc 100  Q
    |||||||| ||||||||||||||||||||||||    
T  16421394 acaacccaaacacatagaagccatattagttgc 16421362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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