View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21269_high_25 (Length: 265)

Name: NF21269_high_25
Description: NF21269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21269_high_25
NF21269_high_25
[»] chr6 (2 HSPs)
chr6 (70-256)||(4141264-4141450)
chr6 (16-58)||(4140664-4140706)
[»] chr5 (1 HSPs)
chr5 (79-256)||(3855173-3855350)
[»] chr8 (1 HSPs)
chr8 (70-147)||(1882018-1882095)
[»] chr3 (2 HSPs)
chr3 (70-147)||(41541812-41541889)
chr3 (207-255)||(41541943-41541991)


Alignment Details
Target: chr6 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 70 - 256
Target Start/End: Original strand, 4141264 - 4141450
Alignment:
Q  70 tcatattctaaagcttaaatatcttattaagattctctttgtatgtccacttcttgaggatttactcataaaaaatgtcaccaccaatgatgataatcat 169  Q
    |||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||    
T  4141264 tcattttctaaagcttaaatatcttattcagattctctctgtatgtccacttcttgaggatttgctcataaaaaatgtcaccaccaatgatgataatgat 4141363  T
Q  170 actcttgatgctcttactaaacaaacagataagttgttaaaacccttccccaaattgctcaaagcccacatttccgactcttcttct 256  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4141364 actcttgatgctcttactaaacaaagagacaagttgttaaaacccttccccaaattgctcaaagcccacatttccgactcttcttct 4141450  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 4140664 - 4140706
Alignment:
Q  16 aaatacttcatcacatcctctcatatttgccctcctcacaaat 58  Q
    ||||||| |||||||||||||||| ||||||||||||||||||    
T  4140664 aaatactccatcacatcctctcatttttgccctcctcacaaat 4140706  T

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Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 79 - 256
Target Start/End: Complemental strand, 3855350 - 3855173
Alignment:
Q  79 aaagcttaaatatcttattaagattctctttgtatgtccacttcttgaggatttactcataaaaaatgtcaccaccaatgatgataatcatactcttgat 178  Q
    ||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||| |||| ||||||||||| |||||||||||    
T  3855350 aaagcttaaatatcttattaagattctctctgtatgtccatttctcgaggatttactcataaaaaatgtcagcacccatgatgataatgatactcttgat 3855251  T
Q  179 gctcttactaaacaaacagataagttgttaaaacccttccccaaattgctcaaagcccacatttccgactcttcttct 256  Q
    |||||| |||||||||||||  |||| ||| ||||||||||||| ||||||||| |||||||||| ||||||||||||    
T  3855250 gctcttgctaaacaaacagacgagttattagaacccttccccaatttgctcaaatcccacatttctgactcttcttct 3855173  T

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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 70 - 147
Target Start/End: Original strand, 1882018 - 1882095
Alignment:
Q  70 tcatattctaaagcttaaatatcttattaagattctctttgtatgtccacttcttgaggatttactcataaaaaatgt 147  Q
    |||| ||||||||||| ||| ||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||    
T  1882018 tcattttctaaagcttcaatttcttattaagattctctctgtatgtccgcttcttgaggatttactcatcaaaaatgt 1882095  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 147
Target Start/End: Original strand, 41541812 - 41541889
Alignment:
Q  70 tcatattctaaagcttaaatatcttattaagattctctttgtatgtccacttcttgaggatttactcataaaaaatgt 147  Q
    |||| ||| ||||||| ||| |||||||||||||||||  |||||||| |||||||||||||||||||| ||||||||    
T  41541812 tcattttccaaagcttcaatttcttattaagattctctccgtatgtccgcttcttgaggatttactcatcaaaaatgt 41541889  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 41541943 - 41541991
Alignment:
Q  207 taaaacccttccccaaattgctcaaagcccacatttccgactcttcttc 255  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||    
T  41541943 taaaacccttccccaatttgctcaaagcccacatttctgactcttcttc 41541991  T

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