View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21269_high_29 (Length: 241)
Name: NF21269_high_29
Description: NF21269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21269_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 35528381 - 35528170
Alignment:
| Q |
18 |
gtaggatgtggtggatgctctataccgactatctgaggcatttcttcatcgtcgacttgttagtatagattctgtgaccggttatgtatcagacgttctc |
117 |
Q |
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| T |
35528381 |
gtaggatgtggtggatgctctataccgactatctgaggcatttcatcatcatcgccttgttagtatagattctgtgtctggttatgtatcagacgttctc |
35528282 |
T |
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| Q |
118 |
tttcatgatcaagatggttctcacgcacacacggtaaagtcaagctgcaaatctcattaaattaaactttgaatctaataatatgtaaagttatttttct |
217 |
Q |
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| T |
35528281 |
tttcatgatcaagatggttctcacgcacacacggtaaagtcaagctgcaaatctcattaaattaaactttgaatctaataatatgtaaagttatttttct |
35528182 |
T |
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| Q |
218 |
cttgtatagtat |
229 |
Q |
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|||||||||||| |
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| T |
35528181 |
cttgtatagtat |
35528170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 159 - 229
Target Start/End: Original strand, 34990036 - 34990106
Alignment:
| Q |
159 |
aagctgcaaatctcattaaattaaactttgaatctaataatatgtaaagttatttttctcttgtatagtat |
229 |
Q |
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| T |
34990036 |
aagcttcaaatctcattaaatcaaactttgaatcttatgatatgtaaagttctttttctcttgtatagtat |
34990106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 198
Target Start/End: Complemental strand, 35564715 - 35564580
Alignment:
| Q |
65 |
atcgtcgacttgttagtatagattctgtgaccggttatgtatcagacgttctctttcatgatcaagatggttctcacgcacacacggta---aagtcaag |
161 |
Q |
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| T |
35564715 |
atcgtcaacttgttagcatggtttctgcaaccggttctgtatcagactttctctttcgtgatcatgatggttctcaaacgcgcacggtaattaactcaag |
35564616 |
T |
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| Q |
162 |
ctgcaaatctcattaaattaaactttgaatctaataa |
198 |
Q |
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| T |
35564615 |
ctccaattctcattaaa-taaactttgaatcttataa |
35564580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 34982226 - 34982285
Alignment:
| Q |
165 |
caaatctcattaaattaaactttgaatctaataatatgtaaagttatttttctcttgtata |
225 |
Q |
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| T |
34982226 |
caaatctcattaaattaaattttgaatcttataatatgt-aagttctttttctcttgtata |
34982285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 229
Target Start/End: Complemental strand, 34982099 - 34982036
Alignment:
| Q |
166 |
aaatctcattaaattaaactttgaatctaataatatgtaaagttatttttctcttgtatagtat |
229 |
Q |
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| T |
34982099 |
aaatctcattaaatcatattttaaatcttataatatgtaaagttctttttctcttgtatagtat |
34982036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 198
Target Start/End: Complemental strand, 35545546 - 35545448
Alignment:
| Q |
102 |
tgtatcagacgttctctttcatgatcaagatggttctcacgcacacacggta---aagtcaagctgcaaatctcattaaattaaactttgaatctaataa |
198 |
Q |
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| T |
35545546 |
tgtatcagacgttctctttcgtgatcatgatggttctcacactcgcacggtaattaactcaagctccaattcatattaaa-taaactttgaatcttataa |
35545448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 34989889 - 34989977
Alignment:
| Q |
20 |
aggatgtggtggatgctctataccgactatctgaggcatttcttcatcgtcgacttgttagtatagattctgtgaccggttatgtatca |
108 |
Q |
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| T |
34989889 |
aggatttggtggatgctgtatatcaactatctgaggcatatgatcatcgtcgtcatgttagcatagtttttgcgactggttttgtatca |
34989977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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