View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21269_high_33 (Length: 227)
Name: NF21269_high_33
Description: NF21269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21269_high_33 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 36966518 - 36966300
Alignment:
| Q |
7 |
attttgtctcaaagaagtggattttttaccataatttcatttaatcttcatggaaaacaaagagcacaatcattttcctgacgcagtaagtattactgta |
106 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
36966518 |
attttgtctca--gaagtggattttttaccataatttcatttaatcttcatggaaaacaaagagcacaatcattttcttgacacagtaagtattactgta |
36966421 |
T |
|
| Q |
107 |
acactttgtaggataagtgcaagtgggaagagtatgaaaatgacacagttgatcccaatagaaaggtcaatatggatatagttctgttttttgtgaaaga |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36966420 |
acactttgtaggataagtgcaagtgggaagagtatgaaaatgacacagttgatcccaatagaaaggtcaatatggatatagttctgttttttgtgaaaga |
36966321 |
T |
|
| Q |
207 |
aaggcaggaaagacaaaggaa |
227 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
36966320 |
aaggcaggagagacaaaggaa |
36966300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University