View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21269_high_4 (Length: 632)

Name: NF21269_high_4
Description: NF21269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21269_high_4
NF21269_high_4
[»] chr4 (15 HSPs)
chr4 (17-622)||(48818106-48818722)
chr4 (146-274)||(27574562-27574689)
chr4 (145-274)||(6942451-6942580)
chr4 (178-244)||(33977801-33977867)
chr4 (148-237)||(19594460-19594549)
chr4 (178-248)||(40293582-40293652)
chr4 (178-244)||(7162239-7162305)
chr4 (172-236)||(6942259-6942323)
chr4 (178-268)||(2720536-2720625)
chr4 (178-280)||(39835705-39835807)
chr4 (184-236)||(2075190-2075242)
chr4 (172-236)||(17354488-17354552)
chr4 (205-271)||(29431829-29431895)
chr4 (178-264)||(54612611-54612696)
chr4 (524-622)||(48792555-48792650)
[»] chr3 (14 HSPs)
chr3 (170-263)||(34819734-34819827)
chr3 (145-274)||(33967912-33968041)
chr3 (179-274)||(33640956-33641051)
chr3 (184-274)||(50302985-50303075)
chr3 (143-267)||(51390310-51390433)
chr3 (144-267)||(50164021-50164144)
chr3 (143-252)||(12790089-12790198)
chr3 (178-279)||(55406888-55406989)
chr3 (172-274)||(28958582-28958683)
chr3 (173-263)||(47068885-47068975)
chr3 (172-273)||(52247425-52247526)
chr3 (148-263)||(14998767-14998881)
chr3 (172-274)||(21758269-21758370)
chr3 (183-280)||(28309469-28309565)
[»] chr1 (22 HSPs)
chr1 (143-267)||(36438395-36438519)
chr1 (178-263)||(47949995-47950080)
chr1 (169-274)||(21008199-21008304)
chr1 (178-263)||(50075600-50075685)
chr1 (147-267)||(11908550-11908670)
chr1 (148-274)||(12570080-12570206)
chr1 (154-274)||(14149452-14149571)
chr1 (183-263)||(47445989-47446069)
chr1 (187-274)||(13383047-13383134)
chr1 (178-280)||(24439128-24439230)
chr1 (172-273)||(35652482-35652583)
chr1 (143-263)||(47176746-47176867)
chr1 (178-280)||(7789449-7789550)
chr1 (178-262)||(46288800-46288884)
chr1 (154-227)||(47449226-47449299)
chr1 (188-248)||(30321998-30322058)
chr1 (180-267)||(18033646-18033733)
chr1 (154-244)||(34967700-34967790)
chr1 (172-273)||(10987198-10987299)
chr1 (148-231)||(8890676-8890760)
chr1 (184-236)||(10101246-10101298)
chr1 (189-245)||(19439420-19439476)
[»] chr7 (7 HSPs)
chr7 (144-274)||(2457927-2458057)
chr7 (143-271)||(23031748-23031875)
chr7 (170-245)||(3399226-3399301)
chr7 (147-234)||(36783278-36783365)
chr7 (143-280)||(32546443-32546580)
chr7 (178-267)||(32650065-32650154)
chr7 (193-280)||(44599389-44599476)
[»] chr2 (20 HSPs)
chr2 (179-264)||(28226187-28226272)
chr2 (148-263)||(43664816-43664931)
chr2 (146-264)||(11252583-11252701)
chr2 (143-236)||(43592736-43592829)
chr2 (148-267)||(35813764-35813884)
chr2 (180-263)||(8335244-8335327)
chr2 (188-250)||(13915887-13915950)
chr2 (145-236)||(30560935-30561026)
chr2 (190-273)||(39958842-39958925)
chr2 (172-242)||(9707121-9707191)
chr2 (144-280)||(1687928-1688062)
chr2 (172-236)||(7721621-7721685)
chr2 (171-274)||(4283430-4283533)
chr2 (179-274)||(5578018-5578113)
chr2 (184-274)||(9886853-9886944)
chr2 (189-267)||(33434259-33434337)
chr2 (219-279)||(1662340-1662400)
chr2 (222-274)||(32839090-32839142)
chr2 (206-262)||(33440856-33440912)
chr2 (143-211)||(33441824-33441892)
[»] chr8 (9 HSPs)
chr8 (143-274)||(12398067-12398198)
chr8 (173-280)||(23736932-23737042)
chr8 (148-248)||(33274295-33274395)
chr8 (148-263)||(40330114-40330229)
chr8 (143-264)||(18310518-18310642)
chr8 (178-264)||(12892616-12892702)
chr8 (147-236)||(30928835-30928924)
chr8 (184-236)||(404423-404474)
chr8 (179-245)||(39400958-39401024)
[»] chr5 (13 HSPs)
chr5 (143-263)||(3494461-3494581)
chr5 (178-263)||(12517116-12517201)
chr5 (148-236)||(17904293-17904381)
chr5 (178-274)||(35470083-35470179)
chr5 (187-280)||(41174141-41174234)
chr5 (216-267)||(18393300-18393351)
chr5 (192-259)||(28993886-28993953)
chr5 (143-263)||(5844370-5844490)
chr5 (230-274)||(11935978-11936022)
chr5 (147-263)||(42207049-42207165)
chr5 (172-234)||(35563117-35563179)
chr5 (213-245)||(12453919-12453951)
chr5 (184-272)||(37194001-37194088)
[»] chr6 (2 HSPs)
chr6 (148-274)||(32604515-32604641)
chr6 (148-236)||(1288129-1288217)
[»] scaffold0129 (1 HSPs)
scaffold0129 (143-241)||(37448-37546)
[»] scaffold0172 (1 HSPs)
scaffold0172 (216-280)||(26390-26454)
[»] scaffold0095 (1 HSPs)
scaffold0095 (179-245)||(36478-36544)


Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 17 - 622
Target Start/End: Complemental strand, 48818722 - 48818106
Alignment:
Q  17 atttgaaaagatcttacta----gtgcctccgatacattctttaaatattttatatcaaaaaattattttnnnnnnngttaaatactataattttcaatg 112  Q
    |||||||||||||||||||    ||||||||||| |||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  48818722 atttgaaaagatcttactaactagtgcctccgatgcattctttaaatattttatatcaaaaaattatttttaaaaaagttaaatactataattttcaatg 48818623  T
Q  113 cattaaatacataannnnnnnnnnnnnnnn------aaggaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactat 206  Q
    ||||||||||||||                      |||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||    
T  48818622 cattaaatacataaaaatttattgtttaatttttttaagggaaatgctaacttgtgcccttaggacacaacataaggatcttaaaatagaattaaacaat 48818523  T
Q  207 aaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagttaaacttttaatgttatgatacaagttagcaagatc 306  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  48818522 aaataatgcattgaaaagataagtttttaaacttttaatgttatgaatgcacaatttccaaagttaaacttttaatgttatgatacaagttagcaagacc 48818423  T
Q  307 taatttttaaagagggtctaagagacattctttagcattttcatatattattatcgtatcattcgtgaataaacaaaa-tataattattgatatgcggaa 405  Q
    ||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  48818422 taatttttaaagaggatctaagagagattctttaacattttcatatattattatcgtatcattcgtgaataaagaaaaatataattattgatatgcggaa 48818323  T
Q  406 ataatgattttcattttatatagagaaattgattgataacgtattaacgtgtgtgcattcactgctatataagatcaccctgaggagcttacatttcaca 505  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48818322 ataatgattttcattttatatagagaaattgattgataacctattaacgtgtgtgcattcactgctatataagatcaccctgaggagcttacatttcaca 48818223  T
Q  506 caacaaacaccaagacatagtgaagcttgttatagcgcacaatggctttttccaccaccatgaaacttgttcttttctctgcactcacactcctctcatt 605  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48818222 caacaaacaccaagacatagtgaagcttgttatagctcaccatggctttttccaccaccatgaaacttgttcttttctctgcactcacactcctctcatt 48818123  T
Q  606 ccaatcagtgttctctg 622  Q
    |||||||||||||||||    
T  48818122 ccaatcagtgttctctg 48818106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 146 - 274
Target Start/End: Original strand, 27574562 - 27574689
Alignment:
Q  146 gaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaag 245  Q
    ||||||| |||||| ||| ||||  |||||| |||| ||||||||||||||||||||  ||||||| || |||||||||||||| ||||||  ||||||     
T  27574562 gaaaatgttaacttatgc-ctttacacacaagataaagatcttaaaatagaattaaataataaatattgaattgaaaagataaaattttaagattttaaa 27574660  T
Q  246 gttatgagtgcacaatttccaaagttaaa 274  Q
    ||||||| ||||||||||  |||||||||    
T  27574661 gttatgaatgcacaatttttaaagttaaa 27574689  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 145 - 274
Target Start/End: Complemental strand, 6942580 - 6942451
Alignment:
Q  145 ggaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaa 244  Q
    |||||||| ||| |||||| ||| || ||||| ||||  |||| ||||||||||||||  ||||||   ||||||||||||||| |||||||||||||||    
T  6942580 ggaaaatgttaatttgtgcccttagggcacaagataaaaatctaaaaatagaattaaaaaataaatgtggcattgaaaagataagtttttaaacttttaa 6942481  T
Q  245 ggttatgagtgcacaatttccaaagttaaa 274  Q
    | | | || ||||||||||||||| |||||    
T  6942480 gatcaagaatgcacaatttccaaaattaaa 6942451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 178 - 244
Target Start/End: Complemental strand, 33977867 - 33977801
Alignment:
Q  178 ataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaa 244  Q
    |||||||| |||||||| |||||||  ||||||| ||||||||||||||||||||||||||||||||    
T  33977867 ataaggatattaaaatataattaaaaaataaatattgcattgaaaagataaatttttaaacttttaa 33977801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 148 - 237
Target Start/End: Complemental strand, 19594549 - 19594460
Alignment:
Q  148 aaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaa 237  Q
    ||||||||||||||||  || || ||||| ||| ||||||||||||||||||| || ||||||| || ||||||||||||| ||||||||    
T  19594549 aaatgctaacttgtgccgttaggtcacaagatagggatcttaaaatagaattatacaataaatattgtattgaaaagataagtttttaaa 19594460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 40293582 - 40293652
Alignment:
Q  178 ataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggtt 248  Q
    |||| ||||||||||||||||||||  ||||||| ||| ||||||||||||||||||||  ||||||||||    
T  40293582 ataaagatcttaaaatagaattaaataataaatattgcgttgaaaagataaatttttaagattttaaggtt 40293652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 244
Target Start/End: Complemental strand, 7162305 - 7162239
Alignment:
Q  178 ataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaa 244  Q
    |||||||||||||||||||||||||  ||||||| | ||||||| |||||| | |||||||||||||    
T  7162305 ataaggatcttaaaatagaattaaaaaataaatattacattgaagagataattgtttaaacttttaa 7162239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 6942323 - 6942259
Alignment:
Q  172 cacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaa 236  Q
    ||||| |||| |||||||||||| |||||||| ||||||| || ||||||||||||| |||||||    
T  6942323 cacaagataaagatcttaaaataaaattaaacaataaatattgtattgaaaagataagtttttaa 6942259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 268
Target Start/End: Original strand, 2720536 - 2720625
Alignment:
Q  178 ataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaa 268  Q
    |||||||||| ||||||||||||||   |||||| ||||||||| |||||| ||||||| | |||||| || | | |||||||||||||||    
T  2720536 ataaggatctaaaaatagaattaaaaattaaatattgcattgaagagataactttttaagc-tttaagattctaaatgcacaatttccaaa 2720625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 280
Target Start/End: Original strand, 39835705 - 39835807
Alignment:
Q  178 ataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagttaaactt 277  Q
    |||||||| | ||||||||||||||  ||||||| | |||| ||||||||| ||||||  |||||||| |||||| | ||||||||  ||| ||||| ||    
T  39835705 ataaggatttaaaaatagaattaaaaaataaatattacatttaaaagataagtttttaggcttttaagattatgaatacacaatttataaaattaaattt 39835804  T
Q  278 tta 280  Q
    |||    
T  39835805 tta 39835807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 2075190 - 2075242
Alignment:
Q  184 atcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaa 236  Q
    |||||||||||||||||||  | ||||| |||||| |||||||||||||||||    
T  2075190 atcttaaaatagaattaaataaaaaatattgcattaaaaagataaatttttaa 2075242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 17354488 - 17354552
Alignment:
Q  172 cacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaa 236  Q
    ||||| |||| |||||||||||||||| |||  ||||||| || ||||||||||||| |||||||    
T  17354488 cacaagataaagatcttaaaatagaatcaaataataaatattgtattgaaaagataagtttttaa 17354552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 271
Target Start/End: Complemental strand, 29431895 - 29431829
Alignment:
Q  205 ataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagtt 271  Q
    ||||||| || ||||||| |||||||||||||  |||||| ||| ||| |||||||||| |||||||    
T  29431895 ataaatattgtattgaaatgataaatttttaagtttttaaagttgtgaatgcacaattttcaaagtt 29431829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 178 - 264
Target Start/End: Complemental strand, 54612696 - 54612611
Alignment:
Q  178 ataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttc 264  Q
    |||||||||| ||| ||||||||||  ||||||  ||||||||||| ||||  ||||||||||||||  |||||| | |||||||||    
T  54612696 ataaggatctaaaactagaattaaaa-ataaatgttgcattgaaaatataagattttaaacttttaaatttatgaatacacaatttc 54612611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 524 - 622
Target Start/End: Complemental strand, 48792650 - 48792555
Alignment:
Q  524 agtgaagcttgttatagcgcacaatggctttttccaccaccatgaaacttgttcttttctctgcactcacactcctctcattccaatcagtgttctctg 622  Q
    ||||||||| | |||||| |||| ||||||   |||||||||||||||| | ||||||||| |  || ||||||||||  |||||| ||||| ||||||    
T  48792650 agtgaagctagctatagctcacagtggctt---ccaccaccatgaaactagctcttttctcagttcttacactcctctacttccaagcagtggtctctg 48792555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 170 - 263
Target Start/End: Original strand, 34819734 - 34819827
Alignment:
Q  170 gacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaattt 263  Q
    ||||||| ||||| |||||||||||||||||||| ||||| | || ||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  34819734 gacacaagataagaatcttaaaatagaattaaacaataaaaattgtattgaaaagataaattttttaacttttaaggttatgaatgcacaattt 34819827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 145 - 274
Target Start/End: Original strand, 33967912 - 33968041
Alignment:
Q  145 ggaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaa 244  Q
    |||||||| |||||||||| |||  | ||||| |||||||||||| ||||||| ||||| ||||||| || ||| |||| |||| |||||||  ||||||    
T  33967912 ggaaaatgttaacttgtgcccttaaggcacaagataaggatcttataatagaaataaacaataaatattgtattaaaaatataactttttaagtttttaa 33968011  T
Q  245 ggttatgagtgcacaatttccaaagttaaa 274  Q
    |||||||| |||||||||||||| ||||||    
T  33968012 ggttatgaatgcacaatttccaatgttaaa 33968041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 179 - 274
Target Start/End: Complemental strand, 33641051 - 33640956
Alignment:
Q  179 taaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagttaaa 274  Q
    ||||||||||||||||||||||||| ||||||| || |||||||| |||| |||||||  |||||| ||||||| |||| |||||| ||| |||||    
T  33641051 taaggatcttaaaatagaattaaacaataaatattgtattgaaaatataagtttttaagattttaaagttatgaatgcaaaatttctaaaattaaa 33640956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 184 - 274
Target Start/End: Original strand, 50302985 - 50303075
Alignment:
Q  184 atcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagttaaa 274  Q
    ||||||||||||||  |||| ||||||| || |||||||| |||| ||||| |||||||||| |||||| |||||||||||||| ||||||    
T  50302985 atcttaaaatagaaacaaacaataaatattgtattgaaaatataagtttttgaacttttaagattatgaatgcacaatttccaaggttaaa 50303075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 143 - 267
Target Start/End: Complemental strand, 51390433 - 51390310
Alignment:
Q  143 aaggaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaactttt 242  Q
    ||||| |||| |||||||||| ||  |||||||| ||||| |||| ||||||| ||||||  ||||||  ||||| ||||||||||| |||||| |||||    
T  51390433 aaggagaatgttaacttgtgccctaaggacacaagataagaatctaaaaatagtattaaagaataaatgttgcatcgaaaagataaa-ttttaacctttt 51390335  T
Q  243 aaggttatgagtgcacaatttccaa 267  Q
    ||  |||||| ||||||||||||||    
T  51390334 aaaattatgaatgcacaatttccaa 51390310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 267
Target Start/End: Complemental strand, 50164144 - 50164021
Alignment:
Q  144 aggaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaactttta 243  Q
    ||||||||| |||||||||| ||| || ||||| |||||||||| ||| | ||||||||  ||||||  || |||||||||||||| ||||||  ||||     
T  50164144 aggaaaatgttaacttgtgcccttagggcacaagataaggatctaaaagtggaattaaaaaataaatgttgtattgaaaagataaacttttaagtttttc 50164045  T
Q  244 aggttatgagtgcacaatttccaa 267  Q
    |  |||||| ||||||||||||||    
T  50164044 aaattatgaatgcacaatttccaa 50164021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 252
Target Start/End: Complemental strand, 12790198 - 12790089
Alignment:
Q  143 aaggaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaactttt 242  Q
    |||| |||||||||||||| |  || || ||||| ||||  |||||||||||| ||||||  ||||||| || |||||||||||||||||||||  ||||    
T  12790198 aagggaaatgctaacttgtacctttaggccacaatataaatatcttaaaataggattaaataataaatattgtattgaaaagataaatttttaagatttt 12790099  T
Q  243 aaggttatga 252  Q
     |||||||||    
T  12790098 taggttatga 12790089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 279
Target Start/End: Complemental strand, 55406989 - 55406888
Alignment:
Q  178 ataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagttaaactt 277  Q
    ||||||||||||||||||||||||||  |||||| || |||| ||| |||| |||| ||  |||||||||||| | ||||||||||  ||||||||| ||    
T  55406989 ataaggatcttaaaatagaattaaacactaaatattgtattggaaaaataagttttaaagtttttaaggttataaatgcacaatttttaaagttaaattt 55406890  T
Q  278 tt 279  Q
    ||    
T  55406889 tt 55406888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 274
Target Start/End: Complemental strand, 28958683 - 28958582
Alignment:
Q  172 cacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagtt 271  Q
    ||||| ||||||||||||||| |||| ||||| |||| || || |||||||||||||| |||||| |||||||||| |||| |  ||| ||| |||||||    
T  28958683 cacaagataaggatcttaaaacagaagtaaacaataattattgtattgaaaagataaa-ttttaagcttttaaggtcatgaatatacacttttcaaagtt 28958585  T
Q  272 aaa 274  Q
    |||    
T  28958584 aaa 28958582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 263
Target Start/End: Original strand, 47068885 - 47068975
Alignment:
Q  173 acaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaattt 263  Q
    |||| |||||||||||| ||||||| | ||  ||||||| || ||| ||||||||| |||||||  |||||| ||||||| ||||||||||    
T  47068885 acaagataaggatcttagaatagaaatcaataataaatattgtattaaaaagataattttttaagtttttaaagttatgaatgcacaattt 47068975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 172 - 273
Target Start/End: Original strand, 52247425 - 52247526
Alignment:
Q  172 cacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagtt 271  Q
    ||||| |||| ||| ||||||||||||||||| ||||||| || ||| |||||| || | ||||  ||||||||  ||||| ||||||||||| ||| ||    
T  52247425 cacaagataaagattttaaaatagaattaaacaataaatattgtattaaaaagacaagtatttaggcttttaagaatatgaatgcacaatttctaaaatt 52247524  T
Q  272 aa 273  Q
    ||    
T  52247525 aa 52247526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 263
Target Start/End: Complemental strand, 14998881 - 14998767
Alignment:
Q  148 aaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggt 247  Q
    ||||||||||||||   |||  ||||||| ||||| ||| |||||||||||||||  ||| ||| |  |||||||||| || |||||||| ||||||| |    
T  14998881 aaatgctaacttgtatccttatgacacaagataagaatcataaaatagaattaaaaaatatatattatattgaaaaga-aagtttttaaatttttaagat 14998783  T
Q  248 tatgagtgcacaattt 263  Q
    ||||| || |||||||    
T  14998782 tatgaatgtacaattt 14998767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 172 - 274
Target Start/End: Original strand, 21758269 - 21758370
Alignment:
Q  172 cacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagtt 271  Q
    ||||| ||||| |||||||||||||||| ||  ||||||| || ||| ||||| ||| | ||||| ||||| ||||  ||| |||| |||||||||||||    
T  21758269 cacaagataagaatcttaaaatagaatt-aataataaatattgtattaaaaagttaactatttaaccttttgaggtattgaatgcataatttccaaagtt 21758367  T
Q  272 aaa 274  Q
    |||    
T  21758368 aaa 21758370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 280
Target Start/End: Original strand, 28309469 - 28309565
Alignment:
Q  183 gatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagttaaactttta 280  Q
    ||||||||||||||| ||||  ||||||| || |||||||| |||| ||||| ||  ||||||||||||  || |||||||  ||||||||| |||||    
T  28309469 gatcttaaaatagaactaaaa-ataaatattgtattgaaaaaataagttttttaatctttaaggttatgtatgtacaatttttaaagttaaattttta 28309565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 7e-26; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 143 - 267
Target Start/End: Complemental strand, 36438519 - 36438395
Alignment:
Q  143 aaggaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaactttt 242  Q
    |||||||||| |||||||||| ||| || ||||| |||||||||||||||||||||| ||  ||||||| ||||||||||| |||| |||| ||  ||||    
T  36438519 aaggaaaatgttaacttgtgcccttagggcacaaaataaggatcttaaaatagaatttaaaaataaatattgcattgaaaatataagttttgaagttttt 36438420  T
Q  243 aaggttatgagtgcacaatttccaa 267  Q
    |||||||||| |||| |||||||||    
T  36438419 aaggttatgaatgcaaaatttccaa 36438395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 178 - 263
Target Start/End: Original strand, 47949995 - 47950080
Alignment:
Q  178 ataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaattt 263  Q
    |||||||||||||||||||||||||  ||||||| ||||||||||||| || ||||||| ||||||||||||||| ||||||||||    
T  47949995 ataaggatcttaaaatagaattaaaaaataaatattgcattgaaaagacaagtttttaagcttttaaggttatgaatgcacaattt 47950080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 169 - 274
Target Start/End: Complemental strand, 21008304 - 21008199
Alignment:
Q  169 ggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaa 268  Q
    |||||||| ||||| |||||||||||||||||||  ||||||| || ||||||||||||| |||||||  |||||||||  ||| ||||| |||| ||||    
T  21008304 ggacacaatataagaatcttaaaatagaattaaataataaatattgtattgaaaagataactttttaagtttttaaggtattgaatgcacgattttcaaa 21008205  T
Q  269 gttaaa 274  Q
    ||||||    
T  21008204 gttaaa 21008199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 178 - 263
Target Start/End: Complemental strand, 50075685 - 50075600
Alignment:
Q  178 ataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaattt 263  Q
    |||| ||| ||||||||||| ||||| ||||||| ||| |||||||||||| |||||||||||||||| |||||| ||||||||||    
T  50075685 ataaagattttaaaatagaaataaacaataaatattgcgttgaaaagataactttttaaacttttaagattatgaatgcacaattt 50075600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 147 - 267
Target Start/End: Complemental strand, 11908670 - 11908550
Alignment:
Q  147 aaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaagg 246  Q
    |||||| |||||| ||||||  |  ||||| |||| ||||| || |||||||||||  ||||||  |||||||||||||||| |||||||||||||||      
T  11908670 aaaatgttaacttatgctctaagagcacaatataaagatctaaatatagaattaaaaaataaatgttgcattgaaaagataagtttttaaacttttaaaa 11908571  T
Q  247 ttatgagtgcacaatttccaa 267  Q
    |||||| ||||||||||||||    
T  11908570 ttatgaatgcacaatttccaa 11908550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 148 - 274
Target Start/End: Original strand, 12570080 - 12570206
Alignment:
Q  148 aaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggt 247  Q
    ||||| |||||||||| ||  || ||||| |||| |||||||||||||||  |||| ||||||| || ||| |||| |||| ||||| |||||||||| |    
T  12570080 aaatgttaacttgtgccctaagggcacaagataaagatcttaaaatagaaacaaacaataaatattgtattaaaaatataagtttttgaacttttaagat 12570179  T
Q  248 tatgagtgcacaatttccaaagttaaa 274  Q
    ||||| |||||||||| ||| ||||||    
T  12570180 tatgaatgcacaattttcaaggttaaa 12570206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 154 - 274
Target Start/End: Original strand, 14149452 - 14149571
Alignment:
Q  154 taacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgag 253  Q
    |||||||||| ||| || || || ||||| |||||||||||||| ||||| |||| || || |||||||||| ||| |||||| |||||||||| ||||     
T  14149452 taacttgtgcccttagggcataagataagaatcttaaaatagaagtaaacaataattattgtattgaaaaga-aaaattttaagcttttaaggtcatgaa 14149550  T
Q  254 tgcacaatttccaaagttaaa 274  Q
    | |||||||| ||||||||||    
T  14149551 tacacaattttcaaagttaaa 14149571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 183 - 263
Target Start/End: Complemental strand, 47446069 - 47445989
Alignment:
Q  183 gatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaattt 263  Q
    ||||| ||||||||||||||  ||||||| || ||||||||||||||||||| |||||||||| |||| | ||||||||||    
T  47446069 gatctaaaaatagaattaaataataaatattgtattgaaaagataaattttttaacttttaagattataaatgcacaattt 47445989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 187 - 274
Target Start/End: Original strand, 13383047 - 13383134
Alignment:
Q  187 ttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagttaaa 274  Q
    ||||||||||| ||||| ||||||| || ||| |||| |||| |||||||||||||||| |||||| |||||||||| | ||||||||    
T  13383047 ttaaaatagaaataaacaataaatattgtattaaaaatataagtttttaaacttttaagattatgaatgcacaattttcgaagttaaa 13383134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 178 - 280
Target Start/End: Original strand, 24439128 - 24439230
Alignment:
Q  178 ataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagttaaactt 277  Q
    ||||| |||| || |||||||||||  ||||||| || ||| |||| |||| |||||||||||||||| |||||| |||||||||| |||| ||||| ||    
T  24439128 ataagaatctaaatatagaattaaaaaataaatattgtattaaaaaaataagtttttaaacttttaagattatgaatgcacaattttcaaaattaaattt 24439227  T
Q  278 tta 280  Q
    |||    
T  24439228 tta 24439230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 273
Target Start/End: Original strand, 35652482 - 35652583
Alignment:
Q  172 cacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagtt 271  Q
    ||||| |||| |||||||||||  |||||||  ||||||| |||||||||||||||| |||||||  | ||||||||  || |||||||||| |||||||    
T  35652482 cacaagataaagatcttaaaattaaattaaataataaatattgcattgaaaagataagtttttaagttgttaaggtttagaatgcacaattttcaaagtt 35652581  T
Q  272 aa 273  Q
    ||    
T  35652582 aa 35652583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 263
Target Start/End: Complemental strand, 47176867 - 47176746
Alignment:
Q  143 aaggaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaatt-aaactataaataatgcattgaaaagataaatttttaaacttt 241  Q
    |||||||||| |||||||||| ||  |  ||||| |||||||||| ||||||||||| |||  ||||||| ||||||||||| || | |||||| |||||    
T  47176867 aaggaaaatgttaacttgtgccctaagagcacaagataaggatctaaaaatagaatttaaaaaataaatattgcattgaaaatatgagtttttatacttt 47176768  T
Q  242 taaggttatgagtgcacaattt 263  Q
     ||| |||||| ||||||||||    
T  47176767 aaagattatgaatgcacaattt 47176746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 280
Target Start/End: Original strand, 7789449 - 7789550
Alignment:
Q  178 ataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagttaaactt 277  Q
    |||| ||||||||||| ||||||||  ||||||| ||||||||||| ||||||||||||  |||| | ||||| | |||||||||| |||  ||||||||    
T  7789449 ataatgatcttaaaatggaattaaaaaataaatattgcattgaaaa-ataaatttttaagattttgaagttataaatgcacaattttcaagattaaactt 7789547  T
Q  278 tta 280  Q
    |||    
T  7789548 tta 7789550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 262
Target Start/End: Original strand, 46288800 - 46288884
Alignment:
Q  178 ataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatt 262  Q
    |||||||||| ||||||||||||||| ||||||| |  ||||| || |||| |||||||  |||||||||||||| || ||||||    
T  46288800 ataaggatctcaaaatagaattaaacaataaatattatattgataaaataagtttttaagtttttaaggttatgaatgtacaatt 46288884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 47449299 - 47449226
Alignment:
Q  154 taacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagata 227  Q
    |||||||||| ||| || ||||| ||||| ||||||||||||||||||   ||||||| || ||||||||||||    
T  47449299 taacttgtgcccttaggccacaagataagaatcttaaaatagaattaactaataaatattgtattgaaaagata 47449226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 30322058 - 30321998
Alignment:
Q  188 taaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggtt 248  Q
    |||||||||||| ||  ||||||| |||||||||||||||| |||||||  ||||||||||    
T  30322058 taaaatagaattgaataataaatattgcattgaaaagataagtttttaagattttaaggtt 30321998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 267
Target Start/End: Original strand, 18033646 - 18033733
Alignment:
Q  180 aaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaa 267  Q
    |||||||| ||  ||||||||||  ||||||  |||||| |||||||||||||||||  ||||||| |||| | |||||||| |||||    
T  18033646 aaggatctaaatgtagaattaaaaaataaatgttgcattaaaaagataaatttttaagtttttaagattataaatgcacaatatccaa 18033733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 154 - 244
Target Start/End: Complemental strand, 34967790 - 34967700
Alignment:
Q  154 taacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaa 244  Q
    |||||||||| ||| || |||||  |||| | || ||||||||||||||  |||| |  ||||||||||| ||||| ||||||||||||||    
T  34967790 taacttgtgcccttggggcacaagttaagaaactaaaaatagaattaaaagataacttttgcattgaaaatataaaattttaaacttttaa 34967700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 273
Target Start/End: Original strand, 10987198 - 10987299
Alignment:
Q  172 cacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagtt 271  Q
    ||||| |||| |||||||||||||| |  ||  ||||||| |||||||||||||||| |||||||  |||||| |||   | |||||||||| ||| |||    
T  10987198 cacaagataaagatcttaaaatagattccaataataaatattgcattgaaaagataagtttttaagattttaaagtttaaaatgcacaattttcaaggtt 10987297  T
Q  272 aa 273  Q
    ||    
T  10987298 aa 10987299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 148 - 231
Target Start/End: Original strand, 8890676 - 8890760
Alignment:
Q  148 aaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaatt-aaactataaataatgcattgaaaagataaatt 231  Q
    ||||| |||||||||||||  || ||||| ||||| |||| ||||||||||| |||  ||||||| ||| ||||||| |||||||    
T  8890676 aaatgttaacttgtgctctaaggtcacaagataagaatctaaaaatagaattaaaaaaataaatattgcgttgaaaatataaatt 8890760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 10101246 - 10101298
Alignment:
Q  184 atcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaa 236  Q
    |||||||||||||||||||  ||||||| || ||| ||||||||| |||||||    
T  10101246 atcttaaaatagaattaaataataaatattgtattaaaaagataagtttttaa 10101298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 19439476 - 19439420
Alignment:
Q  189 aaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaag 245  Q
    |||||||| ||||| |||||||  |||||| ||||||||||||| |||| |||||||    
T  19439476 aaaatagatttaaaatataaatcttgcattaaaaagataaatttataaatttttaag 19439420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 144 - 274
Target Start/End: Complemental strand, 2458057 - 2457927
Alignment:
Q  144 aggaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaactttta 243  Q
    ||||||||| |||||||| | |||  | || || |||||||||||||||||||||||||| || |||| || |||||||||||||  | |||| ||||||    
T  2458057 aggaaaatgttaacttgtacccttaaggcataaaataaggatcttaaaatagaattaaacaatcaatattgtattgaaaagataagctcttaagctttta 2457958  T
Q  244 aggttatgagtgcacaatttccaaagttaaa 274  Q
    ||||||||| ||||||||| |||| ||||||    
T  2457957 aggttatgaatgcacaattcccaatgttaaa 2457927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 143 - 271
Target Start/End: Complemental strand, 23031875 - 23031748
Alignment:
Q  143 aaggaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaactttt 242  Q
    |||| ||||| |||||| ||| ||| || ||||| |||| ||||||||||||||||| ||| ||||||| || ||| |||||||||||||||||  ||||    
T  23031875 aagggaaatgttaacttctgc-cttagggcacaagataatgatcttaaaatagaattgaacaataaatattgtattaaaaagataaatttttaagttttt 23031777  T
Q  243 aaggttatgagtgcacaatttccaaagtt 271  Q
    |||||| ||| |||||||||| |||||||    
T  23031776 aaggttgtgaatgcacaattttcaaagtt 23031748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 3399226 - 3399301
Alignment:
Q  170 gacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaag 245  Q
    ||||||| |||||||||| ||||||||| | ||  ||||||| ||||||||||| |||| ||||||||||||||||    
T  3399226 gacacaagataaggatctaaaaatagaaatgaaaaataaatattgcattgaaaacataagtttttaaacttttaag 3399301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 147 - 234
Target Start/End: Complemental strand, 36783365 - 36783278
Alignment:
Q  147 aaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaattttt 234  Q
    |||||| |||||||||| ||  || ||||| ||||| |||||||||||||||||||  ||||||| || ||||||||||||| |||||    
T  36783365 aaaatgttaacttgtgcactaagggcacaagataagaatcttaaaatagaattaaataataaatattgtattgaaaagataacttttt 36783278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 143 - 280
Target Start/End: Complemental strand, 32546580 - 32546443
Alignment:
Q  143 aaggaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaactttt 242  Q
    |||||||||| |||||||||||||  || || || |||||||||| ||| |  |||||||  ||||||  | ||||||||||||||||||||||  ||||    
T  32546580 aaggaaaatgttaacttgtgctctaagggcataagataaggatctaaaagtgaaattaaaaaataaatgttacattgaaaagataaatttttaacttttt 32546481  T
Q  243 aaggttatgagtgcacaatttccaaagttaaactttta 280  Q
    ||  |||| | | ||||||||||||  ||||| |||||    
T  32546480 aaaattataaattcacaatttccaatattaaattttta 32546443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 178 - 267
Target Start/End: Original strand, 32650065 - 32650154
Alignment:
Q  178 ataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaa 267  Q
    |||||||||| ||| | ||||||||  ||||||  || |||||||||||||||||||||  ||||||| |||||  ||||||||||||||    
T  32650065 ataaggatctaaaagtggaattaaaaaataaatgttgtattgaaaagataaatttttaagtttttaagattatgcatgcacaatttccaa 32650154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 280
Target Start/End: Original strand, 44599389 - 44599476
Alignment:
Q  193 tagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagttaaactttta 280  Q
    ||||||||||  ||||||| || |||||||| |||| |||||||  |||||||||||| | ||||||||||  || |||||| |||||    
T  44599389 tagaattaaataataaatattgtattgaaaatataagtttttaagattttaaggttataaatgcacaatttttaaggttaaattttta 44599476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 179 - 264
Target Start/End: Complemental strand, 28226272 - 28226187
Alignment:
Q  179 taaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttc 264  Q
    ||||||||||||||||||||||||| ||||||| |  ||||||||||||| |||||||||||||||| |||||| | |||||||||    
T  28226272 taaggatcttaaaatagaattaaacaataaatattatattgaaaagataagtttttaaacttttaagattatgaatacacaatttc 28226187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 148 - 263
Target Start/End: Complemental strand, 43664931 - 43664816
Alignment:
Q  148 aaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggt 247  Q
    |||||||||| ||||| ||| ||| |||| |||| ||||| ||||||||||||||  ||||||| | ||||||||| |||| |||||||||||||||| |    
T  43664931 aaatgctaacgtgtgcccttaggaaacaagataatgatctaaaaatagaattaaaaaataaatattacattgaaaatataagtttttaaacttttaagat 43664832  T
Q  248 tatgagtgcacaattt 263  Q
    | ||| ||||||||||    
T  43664831 tttgaatgcacaattt 43664816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 146 - 264
Target Start/End: Complemental strand, 11252701 - 11252583
Alignment:
Q  146 gaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaag 245  Q
    ||||||| |||||||||| ||| || ||||| |||||||||| |||||||||||| |  ||||||  || ||||||||||||| |||| |||||||||||    
T  11252701 gaaaatgttaacttgtgcccttagggcacaagataaggatctaaaaatagaattagaaaataaatggtgtattgaaaagataagttttgaaacttttaag 11252602  T
Q  246 gttatgagtgcacaatttc 264  Q
     |||||| | |||||||||    
T  11252601 attatgaattcacaatttc 11252583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 143 - 236
Target Start/End: Complemental strand, 43592829 - 43592736
Alignment:
Q  143 aaggaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaa 236  Q
    |||| |||||||||||||||| ||| || ||||| |||| |||||||||||||||| |||| ||||||| || ||||||||||||| |||||||    
T  43592829 aagggaaatgctaacttgtgcccttagggcacaagataaagatcttaaaatagaatgaaacaataaatattgtattgaaaagataagtttttaa 43592736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 148 - 267
Target Start/End: Original strand, 35813764 - 35813884
Alignment:
Q  148 aaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaaga-taaatttttaaacttttaagg 246  Q
    ||||| |||||||||| ||  || ||||| |||| ||||||||||||||| ||||| ||||||| |  |||||||| | ||| ||||| ||||||||||     
T  35813764 aaatgttaacttgtgccctaagggcacaagataaagatcttaaaatagaaataaacaataaatattatattgaaaatagtaagttttttaacttttaaga 35813863  T
Q  247 ttatgagtgcacaatttccaa 267  Q
    |||||| ||||||||||||||    
T  35813864 ttatgaatgcacaatttccaa 35813884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 180 - 263
Target Start/End: Complemental strand, 8335327 - 8335244
Alignment:
Q  180 aaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaattt 263  Q
    |||||||| ||||||||||||||  ||||||  ||||||||||| |||| |||||||||||||||  |||||| |||| |||||    
T  8335327 aaggatctaaaaatagaattaaaaaataaatgttgcattgaaaatataagtttttaaacttttaacattatgaatgcataattt 8335244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 13915950 - 13915887
Alignment:
Q  188 taaaatagaattaaactataaataat-gcattgaaaagataaatttttaaacttttaaggttat 250  Q
    |||||||||||||||  ||||||| | |||||||||| ||||||||||||||||||||| ||||    
T  13915950 taaaatagaattaaaaaataaatatttgcattgaaaatataaatttttaaacttttaagtttat 13915887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 145 - 236
Target Start/End: Original strand, 30560935 - 30561026
Alignment:
Q  145 ggaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaa 236  Q
    ||||||||||||||||||| ||  || ||||| ||| |||||| ||| ||||||| ||  ||||||  |||||||||||||||| |||||||    
T  30560935 ggaaaatgctaacttgtgccctaagggcacaagatagggatctaaaagtagaatttaaaaataaatgttgcattgaaaagataagtttttaa 30561026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 190 - 273
Target Start/End: Complemental strand, 39958925 - 39958842
Alignment:
Q  190 aaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagttaa 273  Q
    |||||||| |||||  |||||| || |||||||||||| |||||||| |||||||||| |||| | ||||||||  ||||||||    
T  39958925 aaatagaaataaacactaaatattgtattgaaaagatatatttttaagcttttaaggtcatgaatacacaatttttaaagttaa 39958842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 9707191 - 9707121
Alignment:
Q  172 cacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaactttt 242  Q
    ||||| |||| ||||| ||||||||||||||  ||||||  |||||||||||||||| |||| ||||||||    
T  9707191 cacaagataaagatctaaaaatagaattaaaaaataaatgttgcattgaaaagataagttttaaaactttt 9707121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 144 - 280
Target Start/End: Original strand, 1687928 - 1688062
Alignment:
Q  144 aggaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaactttta 243  Q
    ||||||||||||||||||| || |   | |||| |||||||| | |||||| |||||||  |||||   |||||||||||||||| |||||||||||||     
T  1687928 aggaaaatgctaacttgtggtccta--atacaatataaggatttaaaaataaaattaaaaaataaaggttgcattgaaaagataagtttttaaacttttt 1688025  T
Q  244 aggttatgagtgcacaatttccaaagttaaactttta 280  Q
    |  |||||| || |||||||  ||| ||||| |||||    
T  1688026 aaattatgaatgtacaatttttaaaattaaattttta 1688062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 7721685 - 7721621
Alignment:
Q  172 cacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaa 236  Q
    ||||| |||| ||||| ||||||||||||||  ||||||  |||||||||||||||| |||||||    
T  7721685 cacaatataatgatctaaaaatagaattaaaaaataaatgttgcattgaaaagataagtttttaa 7721621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 274
Target Start/End: Complemental strand, 4283533 - 4283430
Alignment:
Q  171 acacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagt 270  Q
    |||||| ||||  ||||| |||||||||||||  ||||||| |  ||| |||| |||| |||||||  ||||||||||||||  |||||||||  |||||    
T  4283533 acacaagataaatatcttgaaatagaattaaataataaatattatattaaaaatataagtttttaagattttaaggttatgaaagcacaatttttaaagt 4283434  T
Q  271 taaa 274  Q
    ||||    
T  4283433 taaa 4283430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 274
Target Start/End: Complemental strand, 5578113 - 5578018
Alignment:
Q  179 taaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagttaaa 274  Q
    ||||||||| |||| |||||||||  ||||||  || |||||||| |||| |||||||||||| ||| |  | | ||||||||||||||| |||||    
T  5578113 taaggatctaaaaagagaattaaaacataaattttgtattgaaaaaataagtttttaaactttcaagatattaaatgcacaatttccaaaattaaa 5578018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 274
Target Start/End: Original strand, 9886853 - 9886944
Alignment:
Q  184 atcttaaaatagaattaaactataaataatgcattgaaaagataa-atttttaaacttttaaggttatgagtgcacaatttccaaagttaaa 274  Q
    |||||||||||||||||||  || |||| || |||||||||||||  ||||| |  |||||| ||||||| |||||||||| ||| ||||||    
T  9886853 atcttaaaatagaattaaataattaatattgtattgaaaagataagttttttcaggttttaatgttatgaatgcacaattttcaaggttaaa 9886944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 267
Target Start/End: Original strand, 33434259 - 33434337
Alignment:
Q  189 aaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaa 267  Q
    ||||||||||||||  ||||||  | ||||||||||||||||||| |   ||||||| || ||| ||||||||||||||    
T  33434259 aaaatagaattaaaaaataaatgtttcattgaaaagataaattttaagctttttaagattttgaatgcacaatttccaa 33434337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 219 - 279
Target Start/End: Original strand, 1662340 - 1662400
Alignment:
Q  219 gaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagttaaactttt 279  Q
    |||||||||| ||||||| ||||| ||||  |||  |||||||||||||||||||| ||||    
T  1662340 gaaaagataactttttaagcttttgaggtattgaaagcacaatttccaaagttaaattttt 1662400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 32839142 - 32839090
Alignment:
Q  222 aagataaatttttaaacttttaaggttatgagtgcacaatttccaaagttaaa 274  Q
    ||||||| ||||| || |||||||||||||| ||||||||||| || ||||||    
T  32839142 aagataagttttttaatttttaaggttatgaatgcacaatttctaaggttaaa 32839090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 206 - 262
Target Start/End: Complemental strand, 33440912 - 33440856
Alignment:
Q  206 taaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatt 262  Q
    |||||| || ||||||||||||| |||||||  |||||||||||| | |||||||||    
T  33440912 taaatattgtattgaaaagataagtttttaagattttaaggttataaatgcacaatt 33440856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 143 - 211
Target Start/End: Complemental strand, 33441892 - 33441824
Alignment:
Q  143 aaggaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaata 211  Q
    |||| ||||| |||||||| ||| | |||||||| |||| ||||||||||||||| ||||  |||||||    
T  33441892 aagggaaatgttaacttgtactcataggacacaaaataaagatcttaaaatagaagtaaataataaata 33441824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 143 - 274
Target Start/End: Complemental strand, 12398198 - 12398067
Alignment:
Q  143 aaggaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaa-gataaatttttaaacttt 241  Q
    |||| |||||||||| ||||| |||  | ||||| ||||||||||||||||| |||||||  |||||| ||| |||||||| | ||| ||||||| ||||    
T  12398198 aagggaaatgctaacctgtgcccttatg-cacaagataaggatcttaaaatataattaaataataaattatgtattgaaaaagttaagtttttaagcttt 12398100  T
Q  242 taaggttatgagtgcacaatttccaaagttaaa 274  Q
    ||||||||||| || ||||||||||| ||||||    
T  12398099 taaggttatgaatgtacaatttccaaggttaaa 12398067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 173 - 280
Target Start/End: Complemental strand, 23737042 - 23736932
Alignment:
Q  173 acaacataaggatcttaaaatagaattaaactataaataatgc---attgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaag 269  Q
    |||| |||| ||||||||||||||||||||| |||||||||     ||||||||||||| ||||||| ||||||| ||||||| ||||||||||  ||      
T  23737042 acaagataaagatcttaaaatagaattaaacaataaataatattatattgaaaagataagtttttaatcttttaaagttatgaatgcacaatttttaaga 23736943  T
Q  270 ttaaactttta 280  Q
    |||||||||||    
T  23736942 ttaaactttta 23736932  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 148 - 248
Target Start/End: Complemental strand, 33274395 - 33274295
Alignment:
Q  148 aaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggt 247  Q
    ||||| |||||||||  ||| || ||||| | || ||||||||||||||| ||||  ||||||| ||||||||||||||||||||||||  |||||||||    
T  33274395 aaatgttaacttgtgtccttagggcacaagagaaagatcttaaaatagaaataaataataaatattgcattgaaaagataaatttttaagattttaaggt 33274296  T
Q  248 t 248  Q
    |    
T  33274295 t 33274295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 263
Target Start/End: Original strand, 40330114 - 40330229
Alignment:
Q  148 aaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggt 247  Q
    ||||||||||||||| | || || ||||| |||| ||| |||||||| || ||||  ||||||| || |||||||| |||| |||||||| ||||||| |    
T  40330114 aaatgctaacttgtgatattagggcacaagataatgatattaaaataaaaataaataataaatattgtattgaaaatataagtttttaaatttttaagat 40330213  T
Q  248 tatgagtgcacaattt 263  Q
    ||||| ||||||||||    
T  40330214 tatgaatgcacaattt 40330229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 143 - 264
Target Start/End: Complemental strand, 18310642 - 18310518
Alignment:
Q  143 aaggaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataat---gcattgaaaagataaatttttaaact 239  Q
    |||| ||||| |||||||| |||||  |  |||| |||| |||||||||||||||||| || |||||||||   | ||||||||||||| ||||||| ||    
T  18310642 aagggaaatgttaacttgttctcttaaggaacaagataaagatcttaaaatagaattagacaataaataatattgtattgaaaagataagtttttaatct 18310543  T
Q  240 tttaaggttatgagtgcacaatttc 264  Q
    ||||| ||||||| || ||||||||    
T  18310542 tttaaagttatgaatgtacaatttc 18310518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 264
Target Start/End: Complemental strand, 12892702 - 12892616
Alignment:
Q  178 ataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttc 264  Q
    |||||||| |||||||| |||||||  ||||||| |  |||||||| |||| |||||||  |||||||||||||| |||| ||||||    
T  12892702 ataaggattttaaaataaaattaaataataaatattatattgaaaatataagtttttaagtttttaaggttatgaatgcataatttc 12892616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 147 - 236
Target Start/End: Complemental strand, 30928924 - 30928835
Alignment:
Q  147 aaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaa 236  Q
    |||||| ||| |||||||||| ||| |||| |||||||| ||||||||||||| ||  ||||||| | |||| |||| |||| |||||||    
T  30928924 aaaatgttaatttgtgctcttaggatacaagataaggattttaaaatagaatttaaaaataaatattacattaaaaatataagtttttaa 30928835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 404474 - 404423
Alignment:
Q  184 atcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaa 236  Q
    |||||||||||||||||||| ||||||| || |||| ||||||||||||||||    
T  404474 atcttaaaatagaattaaacaataaatattgtattg-aaagataaatttttaa 404423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 179 - 245
Target Start/End: Complemental strand, 39401024 - 39400958
Alignment:
Q  179 taaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaag 245  Q
    ||||||| | ||||||||||||||  ||||||  |||||||||| ||||| ||||||| ||||||||    
T  39401024 taaggatttaaaaatagaattaaaaaataaatgttgcattgaaatgataagtttttaagcttttaag 39400958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 143 - 263
Target Start/End: Original strand, 3494461 - 3494581
Alignment:
Q  143 aaggaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaactttt 242  Q
    |||||||||| ||||||||||  |  |||||||| |||||||||| ||||| ||||||||  ||||||  || ||| |||||||||||||||||  ||||    
T  3494461 aaggaaaatgttaacttgtgccttaaggacacaagataaggatctaaaaatggaattaaaaaataaatgttgtattaaaaagataaatttttaagttttt 3494560  T
Q  243 aaggttatgagtgcacaattt 263  Q
    ||| |||||| ||||||||||    
T  3494561 aagattatgaatgcacaattt 3494581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 178 - 263
Target Start/End: Complemental strand, 12517201 - 12517116
Alignment:
Q  178 ataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaattt 263  Q
    |||||||||||||||||||| ||||| ||||||| |  |||||||| |||||||||||| |||||||| |||||| || |||||||    
T  12517201 ataaggatcttaaaatagaaataaacaataaatattttattgaaaatataaatttttaagcttttaagattatgaatgaacaattt 12517116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 17904293 - 17904381
Alignment:
Q  148 aaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaa 236  Q
    ||||| ||||||||||  || || || || |||||||||||||||||||||||||| ||||| | || |||||||||||||||||||||    
T  17904293 aaatgttaacttgtgcctttagggcataagataaggatcttaaaatagaattaaacaataaaaattgtattgaaaagataaatttttaa 17904381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 178 - 274
Target Start/End: Original strand, 35470083 - 35470179
Alignment:
Q  178 ataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagttaaa 274  Q
    ||||| |||||||||||||||||||| |||| || || |||||||||||||||| |||| |||||| || ||||| || ||||||| ||| ||||||    
T  35470083 ataagaatcttaaaatagaattaaacaataagtattgtattgaaaagataaattattaagcttttacgggtatgaatgaacaattttcaaggttaaa 35470179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 187 - 280
Target Start/End: Complemental strand, 41174234 - 41174141
Alignment:
Q  187 ttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagttaaactttta 280  Q
    ||||||||||||||||  ||||||| || |||||||| |||| |||||||  ||||||| |||||| || ||||||| ||| |||||| |||||    
T  41174234 ttaaaatagaattaaataataaatattgtattgaaaaaataagtttttaagattttaagtttatgaatgtacaattttcaaggttaaattttta 41174141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 18393351 - 18393300
Alignment:
Q  216 attgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaa 267  Q
    ||||||||||||| |||||||| |||||||||||| | ||||||||||||||    
T  18393351 attgaaaagataagtttttaaatttttaaggttataaatgcacaatttccaa 18393300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 192 - 259
Target Start/End: Original strand, 28993886 - 28993953
Alignment:
Q  192 atagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcaca 259  Q
    |||||||||||| ||||||| || |||| ||| |||| ||||||||||||| ||||||||| ||||||    
T  28993886 atagaattaaacaataaatattgtattgtaaatataagtttttaaacttttcaggttatgaatgcaca 28993953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 143 - 263
Target Start/End: Complemental strand, 5844490 - 5844370
Alignment:
Q  143 aaggaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaactttt 242  Q
    |||||||||| |||||||| ||||  || || || ||||||| || ||||||||||||||  ||||||  ||||||||||| |||| |||| |||  |||    
T  5844490 aaggaaaatgataacttgtactctacgggcataagataaggacctaaaaatagaattaaaaaataaatgctgcattgaaaatataagttttaaaatcttt 5844391  T
Q  243 aaggttatgagtgcacaattt 263  Q
    ||| || ||| ||||| ||||    
T  5844390 aagattgtgattgcacgattt 5844370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 11936022 - 11935978
Alignment:
Q  230 tttttaaacttttaaggttatgagtgcacaatttccaaagttaaa 274  Q
    |||||||||||||||||||| || |||||||||| ||||||||||    
T  11936022 tttttaaacttttaaggttacgaatgcacaattttcaaagttaaa 11935978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 147 - 263
Target Start/End: Original strand, 42207049 - 42207165
Alignment:
Q  147 aaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaagg 246  Q
    ||||||||||||| ||||||  |||||||| |||| ||||| |||||| ||||||   ||||||  ||||||||||| ||||  |||| |  ||||||      
T  42207049 aaaatgctaacttatgctctaaggacacaagataaagatctaaaaataaaattaagaaataaatgttgcattgaaaatataaggttttgagtttttaaaa 42207148  T
Q  247 ttatgagtgcacaattt 263  Q
    |||||| ||||||||||    
T  42207149 ttatgaatgcacaattt 42207165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 172 - 234
Target Start/End: Complemental strand, 35563179 - 35563117
Alignment:
Q  172 cacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaattttt 234  Q
    ||||| |||| ||||||||||||||||||||  ||||||| | ||||||||| |||| |||||    
T  35563179 cacaagataaagatcttaaaatagaattaaataataaatattacattgaaaatataagttttt 35563117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 12453919 - 12453951
Alignment:
Q  213 tgcattgaaaagataaatttttaaacttttaag 245  Q
    ||||||||||||||||||||||||| |||||||    
T  12453919 tgcattgaaaagataaatttttaaatttttaag 12453951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 184 - 272
Target Start/End: Complemental strand, 37194088 - 37194001
Alignment:
Q  184 atcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagtta 272  Q
    ||||||||||| |||||||  |||||||  | ||| |||| |||| |||||||  |||||| ||||||| ||||||||||| |||||||    
T  37194088 atcttaaaatataattaaataataaatatggtatttaaaa-ataagtttttaagattttaaagttatgaatgcacaatttctaaagtta 37194001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 148 - 274
Target Start/End: Complemental strand, 32604641 - 32604515
Alignment:
Q  148 aaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggt 247  Q
    ||||| ||||||||||  || || ||||| || | ||||||||||||||| ||||| ||||||| || |||||||| |||||||||||| || ||| | |    
T  32604641 aaatgttaacttgtgcctttagggcacaagattacgatcttaaaatagaaataaacaataaatattgtattgaaaatataaatttttaagctgttaggat 32604542  T
Q  248 tatgagtgcacaatttccaaagttaaa 274  Q
    ||||| |||||||||| ||| ||||||    
T  32604541 tatgaatgcacaattttcaatgttaaa 32604515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 1288129 - 1288217
Alignment:
Q  148 aaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaa 236  Q
    ||||||||| |||||| ||| ||| |||| |||| ||| |||||||||||||||| |||||||| || |||||||| |||| |||||||    
T  1288129 aaatgctaatttgtgcacttaggatacaaaataaagattttaaaatagaattaaattataaatattgtattgaaaatataagtttttaa 1288217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 241
Target Start/End: Complemental strand, 37546 - 37448
Alignment:
Q  143 aaggaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttt 241  Q
    |||||||||| |||||| ||| |||  | ||||| ||||| || ||||||||||||||||  ||||||| ||||||||||| |||| | ||||||||||    
T  37546 aaggaaaatgttaacttatgcccttgtggcacaagataagaatattaaaatagaattaaaaaataaatattgcattgaaaatataagtgtttaaacttt 37448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 26390 - 26454
Alignment:
Q  216 attgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagttaaactttta 280  Q
    ||||| || |||||||||||| ||||||||||||||| |||||||||| | | |||||| |||||    
T  26390 attgataatataaatttttaatcttttaaggttatgaatgcacaattttcgaggttaaattttta 26454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 179 - 245
Target Start/End: Original strand, 36478 - 36544
Alignment:
Q  179 taaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaag 245  Q
    ||||||| | ||||||||||||||  ||||||  |||||||||| ||||| ||||||| ||||||||    
T  36478 taaggatttaaaaatagaattaaaaaataaatgttgcattgaaatgataagtttttaagcttttaag 36544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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