View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21269_high_5 (Length: 591)
Name: NF21269_high_5
Description: NF21269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21269_high_5 |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 17 - 459
Target Start/End: Complemental strand, 883955 - 883523
Alignment:
| Q |
17 |
aaagccatctttcatgggtagggatactcaacgaaattaaagggtgctagatagtggtcaccaccattattgtttccaaatcaatagaaatattttctct |
116 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
883955 |
aaagccatctttcatgggtatggatactcaacgaaattaaagggtgctagatagtggtcaccaccattattgtttccaaatcaatagaaatattttctct |
883856 |
T |
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| Q |
117 |
agaaaagatagaagaaatggctgcagcagaaggagtgagtctgaaccatatagctcgagagtccaccgacgtaaaaagactctccaaattctaccaagag |
216 |
Q |
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| T |
883855 |
agaaaagatagaagaaatggctgcagcagaaggagtgagtctgaaccatatagctcgagagtccaccgacgtaaaaagactctccaaattctaccaagag |
883756 |
T |
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| Q |
217 |
gttagttagcatttagcctatgaaactcagacactcatcttgtttgataccaacacagcacttacacatataatcacattgaattatgtaactttttaaa |
316 |
Q |
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||||||||||||||| |||||||| ||||||||||||||||||| ||| |||| ||| || || ||||||||||||||||||||||||||| |
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| T |
883755 |
gttagttagcatttaacctatgaa----------tcatcttgtttgataccaatacaacactgacaaatgtagtcacattgaattatgtaactttttaaa |
883666 |
T |
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| Q |
317 |
attattatttgtatcgattgtctaatgttcgtgtatgtgttcctgcttcatatcacttgttgatttgaatgagttatcagatgtttgggtttgaggaagt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
883665 |
attattatttgtatcgattgtctaatgttcgtgtatgtgttcatgcttcatatcacttgttgatttgaacgagttatcagatgtttgggtttgaggaagt |
883566 |
T |
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| Q |
417 |
tgagacccctgactttggagagttaaaggttatatggttgcgc |
459 |
Q |
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| T |
883565 |
tgagacccctgactttggagagttaaagattatatggttgcgc |
883523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 483 - 588
Target Start/End: Complemental strand, 883505 - 883400
Alignment:
| Q |
483 |
acttatccatctcatacaacgtagcaacggcgagctggctccatcatcctccattcctgttaaagacccctctcatatccgcttaggccatcatctctgc |
582 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
883505 |
acttatccatctcatacaacatagcaacggcgagctggctccatcatcctccattcctgttaaagacccctctcatatccgcttaggccatcatctttgc |
883406 |
T |
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| Q |
583 |
tcctcc |
588 |
Q |
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| |||| |
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| T |
883405 |
ttctcc |
883400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 324
Target Start/End: Original strand, 38749571 - 38749615
Alignment:
| Q |
280 |
acacatataatcacattgaattatgtaactttttaaaattattat |
324 |
Q |
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| T |
38749571 |
acacatataattacattgaattatgtcattttttcaaattattat |
38749615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 324
Target Start/End: Complemental strand, 99944 - 99900
Alignment:
| Q |
280 |
acacatataatcacattgaattatgtaactttttaaaattattat |
324 |
Q |
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| T |
99944 |
acacatataattacattgaattatgttattttctaaaattattat |
99900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 282 - 334
Target Start/End: Complemental strand, 3677835 - 3677783
Alignment:
| Q |
282 |
acatataatcacattgaattatgtaactttttaaaattattatttgtatcgat |
334 |
Q |
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| T |
3677835 |
acatataattacatagaattatgtgattttttaaaattattaattgtgtcgat |
3677783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 18013077 - 18013125
Alignment:
| Q |
275 |
cacttacacatataatcacattgaattatgtaactttttaaaattatta |
323 |
Q |
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|||| ||||||||||| ||| |||||||||||| ||||| ||||||||| |
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| T |
18013077 |
cactgacacatataattacactgaattatgtaatttttttaaattatta |
18013125 |
T |
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