View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21269_high_6 (Length: 547)
Name: NF21269_high_6
Description: NF21269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21269_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 13 - 294
Target Start/End: Complemental strand, 33453375 - 33453094
Alignment:
| Q |
13 |
aatatgacctattaaagagtttagaggtggaatatgaaagtatggtgattcgagatcatattgacaccatgaatgagatgtaattcaagaatacataagt |
112 |
Q |
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| T |
33453375 |
aatatgacctattaaagagtttagaggtggaatatgaaagtacggtgattccagatcatattgacaccatgaatgagatgtacttcaagaatacataagt |
33453276 |
T |
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| Q |
113 |
aatttacatccttatgattatcaataggccagagaatttcctttaattctgtaaggagagtatttcttgattcgaagcttataatttgtcttatgaatgt |
212 |
Q |
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| T |
33453275 |
aatttacatccttatgattatcaataggccagagaatttcctttaattctataaggagagtatttcttgattcgaagcttataatttgtcttatgaatgt |
33453176 |
T |
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| Q |
213 |
tgaaataagacttttagtagcattcctacaaagcaaatttcaacgtcctgcaacagtgaaatttaggcaaatacaattcggg |
294 |
Q |
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| T |
33453175 |
tgaaataagacttttagtagcattcctacaaagcaaatttaaacttcctgcaacagtgaaatttaggcaaatactattcggg |
33453094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 370 - 530
Target Start/End: Complemental strand, 33453018 - 33452858
Alignment:
| Q |
370 |
tactttcaattacatgcattggacaggagaagcaacatatgaacatattagaacaggagaaggggtcaagcctcatgactattgcatgcattggatctat |
469 |
Q |
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| T |
33453018 |
tactttcaattacatgcattggacaggagaagcaacatatgaacatattagaacaggagaaggggtcaagcctcatgactattgcatgcattggatctat |
33452919 |
T |
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| Q |
470 |
taccttacctcaacattattttctattacaatactatgtacgttatttcttatcaagtctg |
530 |
Q |
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| T |
33452918 |
taccttacctcaacattattttctattacaatactacgtacgttatttcttatcaagtctg |
33452858 |
T |
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