View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21269_low_11 (Length: 452)
Name: NF21269_low_11
Description: NF21269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21269_low_11 |
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| [»] scaffold0229 (1 HSPs) |
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Alignment Details
Target: scaffold0229 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 105 - 429
Target Start/End: Original strand, 16595 - 16928
Alignment:
| Q |
105 |
gaggattgttaagagtttccccaaaataccaccaagagttataaccaatttgcattcaataattttctagtttttaccatgctttacatgcttaatgttg |
204 |
Q |
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| T |
16595 |
gaggattgttaagagtttccccaaaataccaccaagagttataaccaatttgcattcaataattttctagtttttaccatgctttacatgcttaatgttg |
16694 |
T |
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| Q |
205 |
tgtaatttttgctacataatagtgcaattatagctaaagagggtctcatcactcttcgagtacaatttatatatgaactgacttggatggaggactctga |
304 |
Q |
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| T |
16695 |
tgtaatttttgctacataatagtgcaattatagctaaagagggtctcatcactcttcgagtacaatttatatatgaactgacttggatggaggactctga |
16794 |
T |
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| Q |
305 |
ggttttttgtttctac---------attgataatatttggttaattttgtattggctttataggtatgcatttgtttgaaaagcttctatgcaatgtgat |
395 |
Q |
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| T |
16795 |
ggttttttgtttctacattgataatattgataatatttggttaattttgtattggctttataggtatgcatttgtttgaaaagtttctatgcaatgtgat |
16894 |
T |
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| Q |
396 |
atgaatttagttgcagattattaactcatccatc |
429 |
Q |
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| T |
16895 |
atgaatttagttgcagattattaactcatccatc |
16928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 105 - 429
Target Start/End: Complemental strand, 1401763 - 1401430
Alignment:
| Q |
105 |
gaggattgttaagagtttccccaaaataccaccaagagttataaccaatttgcattcaataattttctagtttttaccatgctttacatgcttaatgttg |
204 |
Q |
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| T |
1401763 |
gaggattgttaagagtttccccaaaataccaccaagagttataaccaatttgcattcaataattttctagtttttaccatgctttacatgcttaatgttg |
1401664 |
T |
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| Q |
205 |
tgtaatttttgctacataatagtgcaattatagctaaagagggtctcatcactcttcgagtacaatttatatatgaactgacttggatggaggactctga |
304 |
Q |
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| T |
1401663 |
tgtaatttttgctacataatagtgcaattatagctaaagagggtctcatcactcttcgagtacaatttatatatgaactgacttggatggaggactctga |
1401564 |
T |
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| Q |
305 |
ggttttttgtttctacattgataa---------tatttggttaattttgtattggctttataggtatgcatttgtttgaaaagcttctatgcaatgtgat |
395 |
Q |
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| T |
1401563 |
ggttttttgtttctacattgataatattgataatatttggttaattttgtattggctttataggtatgcatttgtttgaaaagtttctatgcaatgtgat |
1401464 |
T |
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| Q |
396 |
atgaatttagttgcagattattaactcatccatc |
429 |
Q |
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| T |
1401463 |
atgaatttagttgcagattattaactcatccatc |
1401430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 413
Target Start/End: Complemental strand, 1376218 - 1376128
Alignment:
| Q |
326 |
taatatttggttaattttgtattggctttataggtatgcatttgtttgaaaag--cttctatgcaatgtgata-tgaatttagttgcagat |
413 |
Q |
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|||||||||||||| |||| |||| |||| |||| ||||| || ||||||||| ||||||||||||||||| || ||||||||||||| |
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| T |
1376218 |
taatatttggttaaatttgaattgactttgtaggaatgcacttctttgaaaagttattctatgcaatgtgatagggattttagttgcagat |
1376128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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