View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21269_low_12 (Length: 445)
Name: NF21269_low_12
Description: NF21269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21269_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 18 - 413
Target Start/End: Original strand, 6585687 - 6586082
Alignment:
| Q |
18 |
gatgtatatatatcgacctcaaaaatgaatgcaaacaagaattcatatcggccatgtggcctcgtgtcaatttgccactcacattccacgtgttgtgtat |
117 |
Q |
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| T |
6585687 |
gatgtatatatatcgacctcaaaaatgaatgcaaacaagaattcatatcggccatgtagccacgtgtcaatttgccactcacattccacgtgttgtgtat |
6585786 |
T |
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| Q |
118 |
tttcatgttatccaaaatcaaatagatactcaatcttttctagaaatgacaaaaattatagttagttggataacactgatatcatataaacgaaattaaa |
217 |
Q |
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| T |
6585787 |
tttcatgttatccaaaatcaaatagatactcaatcttttctagaaatgacaaaaattatagttagttggataacactgatatcatataaacgaaattaaa |
6585886 |
T |
|
| Q |
218 |
tcaaaataaatatttttcaattaggataataaacaggggtggcatagcatgccgacaaacataggagaggctggccaattgaagtggtctgagttcgaat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6585887 |
tcaaaataaatatttttcaattaggataataaacaggggtggcatagcatgccgacaaacataggagaggctggccaattgaagtggtctgatttcgaat |
6585986 |
T |
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| Q |
318 |
tttcactatacctcgcactatggtaagcagacaagtggactactaatgatttgctgttatagttctacatgatttctcattaaaaacatagtaaaa |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6585987 |
tttcactatacctcgcactatggtaagcagacaagtggactactaatgatttgctgttatagttctacatgatttctcattaaaaacattgtaaaa |
6586082 |
T |
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