View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21269_low_15 (Length: 410)
Name: NF21269_low_15
Description: NF21269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21269_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 39 - 398
Target Start/End: Original strand, 8376750 - 8377108
Alignment:
| Q |
39 |
gttctattttaattaacatacttttcatatctta-attatataacnnnnnnnngaagtgaaatttaatgttcttcaattttgtcattttaaaacgcaaag |
137 |
Q |
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| T |
8376750 |
gttctattttaattaacatacttttcatatcttatattacaaaa--aaaagaagaagtgaaatttaatgttcttcaattttgtcattttaaaacgcaaag |
8376847 |
T |
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| Q |
138 |
ttcatcatatccatgctcaagctttgcatcataacattctgcatgaatcctccacacttgaaattggaagtagatctcttaaagctatggcttctaggct |
237 |
Q |
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| T |
8376848 |
ttcatcatatccatgctcaagctttgcatcataacattctgcatgaatcctccacacttgaaattggaagtagatctcttaaagctatggcttctaggct |
8376947 |
T |
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| Q |
238 |
tgaaagaagcagtgcatgaagaaataggaatgattgggatattctcacagttgcatagctcaatcatgtagccatcagggtcatggaagaacacttgatc |
337 |
Q |
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| T |
8376948 |
tgaaagaagcagtgcatgaagaaataggaatgattgggatattctcacagttgcatagctcaatcatgtagccatcagggtcatggaagaacacttgatc |
8377047 |
T |
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| Q |
338 |
taccttaattccttcatcctctaccaatgctgtaacatatctcattcccttttcttctaat |
398 |
Q |
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| T |
8377048 |
taccttaattccttcatcctctaccaatgctgtaacatatctcattcccttttcttctaat |
8377108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 314 - 398
Target Start/End: Original strand, 8367695 - 8367779
Alignment:
| Q |
314 |
agggtcatggaagaacacttgatctaccttaattccttcatcctctaccaatgctgtaacatatctcattcccttttcttctaat |
398 |
Q |
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| T |
8367695 |
agggtcatggaagaacacttgatcttccttaattcttacatcctttaccaaagttgtaacatacctaatccccttttcttctaat |
8367779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 8366935 - 8367003
Alignment:
| Q |
91 |
gaagtgaaatttaatgttcttcaa-ttttgtcattttaaaacgcaaagttcatcatatccatgctcaagc |
159 |
Q |
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| T |
8366935 |
gaagtgaaatt-aatgttctttgagttttgtcattttaaaaggcaaagttcatcatgtccatgctgaagc |
8367003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 125 - 376
Target Start/End: Original strand, 32248727 - 32248972
Alignment:
| Q |
125 |
ttaaaacgcaaagttcatcatatccatgctcaagctttgcatcataacattctgcatgaatcctccacacttgaaattggaagtagatctcttaaagcta |
224 |
Q |
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| T |
32248727 |
ttaaaatgcaaagttcatcatatccttggtcaagcttcgcatcataacattttccatgaatcc---acacttg---ttagaaacagtcttcttaaagctc |
32248820 |
T |
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| Q |
225 |
tggcttctaggcttgaaagaagcagt-gcatgaagaaataggaatgattgggatattctcacagttgcatagctcaatcatgtagccatcagggtcatgg |
323 |
Q |
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| T |
32248821 |
tggcctcgtgccttgaaagagccggaagca-gaagagatgggaactattgggatattctcacagttgcaaagctctatcatgtatccatcagggtcatgg |
32248919 |
T |
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| Q |
324 |
aagaacacttgatctaccttaattccttcatcctctaccaatgctgtaacata |
376 |
Q |
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| T |
32248920 |
aagaacacctgctccaccttgattccttcatcctctaccaaagccgtaacata |
32248972 |
T |
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