View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21269_low_18 (Length: 367)

Name: NF21269_low_18
Description: NF21269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21269_low_18
NF21269_low_18
[»] chr4 (2 HSPs)
chr4 (18-355)||(32425418-32425755)
chr4 (18-355)||(32419140-32419477)
[»] chr7 (1 HSPs)
chr7 (18-355)||(40596124-40596461)
[»] chr6 (1 HSPs)
chr6 (190-314)||(70968-71092)


Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 32425418 - 32425755
Alignment:
Q  18 agttaaaaccaatataagtgctgctttagctgagttcgccattttaaccgcagaagaagctagactctccaatgggcccatcggtactggtgagtgctcc 117  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32425418 agttaaaaccaatataagtgctgctttagctgagtttgccattttaaccgcagaagaagctagactctccaatgggcccatcggtactggtgagtgctcc 32425517  T
Q  118 attatccttttaaatacatctccatagttgatggtactctcagcttcaacacaaattttagccatagttcgaacagcaagttctggataagctccagcag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32425518 attatccttttaaatacatctccatagttgatggtactctcagcttcaacacaaattttagccatagttcgaacagcaagttctggataagctccagcag 32425617  T
Q  218 cagtttcaccactaagcatgacacaatctgtgccatccagaactgcattcgcgacatcagtagcttcagctctggttggcctaggtgatttgatcattga 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32425618 cagtttcaccactaagcatgacacaatctgtgccatccagaactgcattcgcgacatcagtagcttcagctctggttggcctaggtgatttgatcattga 32425717  T
Q  318 ctccaacatctgcgttgcagtgacaaccggctttcctt 355  Q
    ||||||||||||||||||||||||||||||||||||||    
T  32425718 ctccaacatctgcgttgcagtgacaaccggctttcctt 32425755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 32419140 - 32419477
Alignment:
Q  18 agttaaaaccaatataagtgctgctttagctgagttcgccattttaaccgcagaagaagctagactctccaatgggcccatcggtactggtgagtgctcc 117  Q
    ||||||||||||||| || |||||| |||| ||||| ||  || |||| ||||||||||||||||||||||| |||| ||| ||||||||||||||||||    
T  32419140 agttaaaaccaatatgagagctgctctagcagagttggctgttctaacagcagaagaagctagactctccaacgggctcatgggtactggtgagtgctcc 32419239  T
Q  118 attatccttttaaatacatctccatagttgatggtactctcagcttcaacacaaattttagccatagttcgaacagcaagttctggataagctccagcag 217  Q
    ||||||||||| ||||||||||||||||  ||||| ||||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||||||||    
T  32419240 attatccttttgaatacatctccatagtcaatggtgctctcagcttcaacacatattttagccattgtacgaacagcgagttctggataagctccagcag 32419339  T
Q  218 cagtttcaccactaagcatgacacaatctgtgccatccagaactgcattcgcgacatcagtagcttcagctctggttggcctaggtgatttgatcattga 317  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||  || ||||||||||||||    
T  32419340 cagtttcaccactaagcatgacacagtctgttccatccagaactgcatttgcaacatcagtagcttcagctctggttggccggggagatttgatcattga 32419439  T
Q  318 ctccaacatctgcgttgcagtgacaaccggctttcctt 355  Q
    |||||||||||| || ||||| || ||||| |||||||    
T  32419440 ctccaacatctgggtcgcagtaacgaccggttttcctt 32419477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 40596124 - 40596461
Alignment:
Q  18 agttaaaaccaatataagtgctgctttagctgagttcgccattttaaccgcagaagaagctagactctccaatgggcccatcggtactggtgagtgctcc 117  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  40596124 agttaaaaccaatataagtgctgctttagctgagttggccattttaactgcagaagaagctagactctccaatgggctcatgggtactggtgagtgctcc 40596223  T
Q  118 attatccttttaaatacatctccatagttgatggtactctcagcttcaacacaaattttagccatagttcgaacagcaagttctggataagctccagcag 217  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40596224 attatccttttaaatacatctccatagttaatggtactctcagcttcaacacaaattttagccatagttcgaacagcaagttctggataagctccagcag 40596323  T
Q  218 cagtttcaccactaagcatgacacaatctgtgccatccagaactgcattcgcgacatcagtagcttcagctctggttggcctaggtgatttgatcattga 317  Q
    |||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| || ||||||||||||||    
T  40596324 cagtttcaccgctaagcatgacacagtctgtgccgtccagaactgcattggcgacatctgtagcttcagctctggttggcctgggagatttgatcattga 40596423  T
Q  318 ctccaacatctgcgttgcagtgacaaccggctttcctt 355  Q
    |||||||||||| |||||||| ||||| ||||||||||    
T  40596424 ctccaacatctgggttgcagtaacaacaggctttcctt 40596461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 190 - 314
Target Start/End: Complemental strand, 71092 - 70968
Alignment:
Q  190 acagcaagttctggataagctccagcagcagtttcaccactaagcatgacacaatctgtgccatccagaactgcattcgcgacatcagtagcttcagctc 289  Q
    ||||||||||| || ||||||||||||||| ||||||||||||||||||| ||||| || ||||| ||||||||||| || |||||||| ||||||||||    
T  71092 acagcaagttcagggtaagctccagcagcactttcaccactaagcatgacgcaatccgttccatcaagaactgcattggctacatcagttgcttcagctc 70993  T
Q  290 tggttggcctaggtgatttgatcat 314  Q
     ||||||||  || |||||||||||    
T  70992 gggttggccggggagatttgatcat 70968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University