View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21269_low_19 (Length: 341)
Name: NF21269_low_19
Description: NF21269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21269_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 16 - 326
Target Start/End: Complemental strand, 34628372 - 34628062
Alignment:
| Q |
16 |
attcaaggtaaagtacaaaatttcggctgttttagagtctaatataccaaacagtatatgacaacatgaaaacagattcaatttgactttatgcagagtc |
115 |
Q |
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| T |
34628372 |
attcaaggtaaagtacaaaaattcggctgttttagagtccaatataccaaacagtatatgacaacatgaaaacagattcaatttgactttatgcagagcc |
34628273 |
T |
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| Q |
116 |
cttgtatgaaacagtcactctgctaactgccaaaactacaattaatattatagtgtgagatttttgtatttttaatgtaggaaaaaactcttaaccaata |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34628272 |
cttgtatgaaacagtcactctgctaactgccaaaactacaattaatattatagtgtgagatttttgtatttttaatgtaggaaaaaactcttaaccaata |
34628173 |
T |
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| Q |
216 |
ccaacttgggatttgtctatttctaatctatagagctaagttaatacgattttggttagtatagaatcatgaccagcctgtaacaatgtctagcgtattc |
315 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34628172 |
ccaacttgggatttatctatttctaatctatagagctaagttaatacgattttggttagtatagaatcatgaccagcctgtaacaatgtctagcgtattc |
34628073 |
T |
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| Q |
316 |
tgtgtcatttt |
326 |
Q |
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||||||||||| |
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| T |
34628072 |
tgtgtcatttt |
34628062 |
T |
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