View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21269_low_20 (Length: 332)

Name: NF21269_low_20
Description: NF21269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21269_low_20
NF21269_low_20
[»] chr5 (16 HSPs)
chr5 (72-298)||(1586573-1586796)
chr5 (72-257)||(1580463-1580648)
chr5 (72-257)||(1604167-1604352)
chr5 (246-316)||(1586804-1586874)
chr5 (247-316)||(1586919-1586988)
chr5 (247-316)||(1587030-1587099)
chr5 (243-300)||(1591032-1591089)
chr5 (247-298)||(1586775-1586826)
chr5 (246-316)||(1586834-1586901)
chr5 (247-298)||(1586889-1586940)
chr5 (207-290)||(1591072-1591155)
chr5 (246-316)||(1586948-1587015)
chr5 (247-316)||(1587087-1587153)
chr5 (247-315)||(1586976-1587041)
chr5 (276-316)||(1586747-1586787)
chr5 (250-316)||(1587117-1587180)
[»] chr3 (4 HSPs)
chr3 (207-311)||(19270846-19270950)
chr3 (247-316)||(19270652-19270718)
chr3 (270-316)||(19270706-19270752)
chr3 (247-311)||(19270765-19270826)


Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 72 - 298
Target Start/End: Original strand, 1586573 - 1586796
Alignment:
Q  72 ctgctatggctaggaagaagatcaatgcattgatgcaaaatatggaaacaatggaagaaaggaaattcaaccctttccctcactttactttgcataatct 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1586573 ctgctatggctaggaagaagatcaatgcattgatgcaaaatatggaaacaatggaagaaaggaaattcaaccctttccctcactttactttgcataatct 1586672  T
Q  172 gttatcttattattcacctcagctttataccgaacaagagttagcacaaatacagaaaatcaatcaacatctttgccaagaaacaatggaaggagatcat 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||    
T  1586673 gttatcttattattcacctcagctttataccgaacaagagttagcacaaatacagaaaatcaatcaacatctttgccaagaaacaatggaaggag---at 1586769  T
Q  272 gttcgccaagaaacaatggaaggagat 298  Q
    |||  ||||||||||||||||||||||    
T  1586770 gttgtccaagaaacaatggaaggagat 1586796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 72 - 257
Target Start/End: Original strand, 1580463 - 1580648
Alignment:
Q  72 ctgctatggctaggaagaagatcaatgcattgatgcaaaatatggaaacaatggaagaaaggaaattcaaccctttccctcactttactttgcataatct 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1580463 ctgctatggctaggaagaagatcaatgcattgatgcaaaatatggaaacaatggaagaaaggaaattcaaccctttccctcactttactttgcataatct 1580562  T
Q  172 gttatcttattattcacctcagctttataccgaacaagagttagcacaaatacagaaaatcaatcaacatctttgccaagaaacaa 257  Q
    ||||||||||||| |||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| ||||||||||||    
T  1580563 gttatcttattatgcacctcagctttataccgaaaaagatttagcacaaatagagaaaatcaatcaacatcttcgccaagaaacaa 1580648  T

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Target: chr5; HSP #3
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 72 - 257
Target Start/End: Complemental strand, 1604352 - 1604167
Alignment:
Q  72 ctgctatggctaggaagaagatcaatgcattgatgcaaaatatggaaacaatggaagaaaggaaattcaaccctttccctcactttactttgcataatct 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1604352 ctgctatggctaggaagaagatcaatgcattgatgcaaaatatggaaacaatggaagaaaggaaattcaaccctttccctcactttactttgcataatct 1604253  T
Q  172 gttatcttattattcacctcagctttataccgaacaagagttagcacaaatacagaaaatcaatcaacatctttgccaagaaacaa 257  Q
    ||||||||||||| |||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| ||||||||||||    
T  1604252 gttatcttattatgcacctcagctttataccgaaaaagatttagcacaaatagagaaaatcaatcaacatcttcgccaagaaacaa 1604167  T

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Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 246 - 316
Target Start/End: Original strand, 1586804 - 1586874
Alignment:
Q  246 gccaagaaacaatggaaggagatcatgttcgccaagaaacaatggaaggagatgttatccaagaaacaatg 316  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1586804 gccaagaaacaacggaaggagatcatgttcgccaagaaacaatggaaggagatgttatccaagaaacaatg 1586874  T

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Target: chr5; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 247 - 316
Target Start/End: Original strand, 1586919 - 1586988
Alignment:
Q  247 ccaagaaacaatggaaggagatcatgttcgccaagaaacaatggaaggagatgttatccaagaaacaatg 316  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1586919 ccaagaaacaacggaaggagatcatgttcgccaagaaacaatggaaggagatgttatccaagacacaatg 1586988  T

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Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 247 - 316
Target Start/End: Original strand, 1587030 - 1587099
Alignment:
Q  247 ccaagaaacaatggaaggagatcatgttcgccaagaaacaatggaaggagatgttatccaagaaacaatg 316  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||  |||||||||||||    
T  1587030 ccaagaaacaatagaaggagatcatgttcgccaaaaaacaatggaaagagatgtttaccaagaaacaatg 1587099  T

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Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 243 - 300
Target Start/End: Complemental strand, 1591089 - 1591032
Alignment:
Q  243 tttgccaagaaacaatggaaggagatcatgttcgccaagaaacaatggaaggagatgt 300  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  1591089 tttgccaagaaacaatggcacgagatcatgttcgccaagaaacaatggaaggagatgt 1591032  T

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Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 247 - 298
Target Start/End: Original strand, 1586775 - 1586826
Alignment:
Q  247 ccaagaaacaatggaaggagatcatgttcgccaagaaacaatggaaggagat 298  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1586775 ccaagaaacaatggaaggagatcatgttcgccaagaaacaacggaaggagat 1586826  T

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Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 246 - 316
Target Start/End: Original strand, 1586834 - 1586901
Alignment:
Q  246 gccaagaaacaatggaaggagatcatgttcgccaagaaacaatggaaggagatgttatccaagaaacaatg 316  Q
    |||||||||||||||||||||||   |||  ||||||||||||||||||||||||| ||||||||||||||    
T  1586834 gccaagaaacaatggaaggagat---gttatccaagaaacaatggaaggagatgttttccaagaaacaatg 1586901  T

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Target: chr5; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 247 - 298
Target Start/End: Original strand, 1586889 - 1586940
Alignment:
Q  247 ccaagaaacaatggaaggagatcatgttcgccaagaaacaatggaaggagat 298  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  1586889 ccaagaaacaatggaaggagatcatgttcaccaagaaacaacggaaggagat 1586940  T

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Target: chr5; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 207 - 290
Target Start/End: Complemental strand, 1591155 - 1591072
Alignment:
Q  207 aagagttagcacaaatacagaaaatcaatcaacatctttgccaagaaacaatggaaggagatcatgttcgccaagaaacaatgg 290  Q
    ||||||||||| ||||| ||||| || |||||| | ||  |||||||||||||||| ||||||||||| |||||||||||||||    
T  1591155 aagagttagcagaaataaagaaactctatcaacgtgttctccaagaaacaatggaacgagatcatgtttgccaagaaacaatgg 1591072  T

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Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 246 - 316
Target Start/End: Original strand, 1586948 - 1587015
Alignment:
Q  246 gccaagaaacaatggaaggagatcatgttcgccaagaaacaatggaaggagatgttatccaagaaacaatg 316  Q
    |||||||||||||||||||||||   |||  |||||| |||||||||||||||||| ||||||||||||||    
T  1586948 gccaagaaacaatggaaggagat---gttatccaagacacaatggaaggagatgttgtccaagaaacaatg 1587015  T

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Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 316
Target Start/End: Original strand, 1587087 - 1587153
Alignment:
Q  247 ccaagaaacaatggaaggagatcatgttcgccaagaaacaatggaaggagatgttatccaagaaacaatg 316  Q
    |||||||||||||||| |||||   |||| || |||||||||||||||||||||| ||||||||||||||    
T  1587087 ccaagaaacaatggaaagagat---gttctcccagaaacaatggaaggagatgttgtccaagaaacaatg 1587153  T

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Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 247 - 315
Target Start/End: Original strand, 1586976 - 1587041
Alignment:
Q  247 ccaagaaacaatggaaggagatcatgttcgccaagaaacaatggaaggagatgttatccaagaaacaat 315  Q
    |||||| |||||||||||||||  |||   ||||||||||||||||||||||||| |||||||||||||    
T  1586976 ccaagacacaatggaaggagatgttgt---ccaagaaacaatggaaggagatgttgtccaagaaacaat 1587041  T

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Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 276 - 316
Target Start/End: Original strand, 1586747 - 1586787
Alignment:
Q  276 gccaagaaacaatggaaggagatgttatccaagaaacaatg 316  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  1586747 gccaagaaacaatggaaggagatgttgtccaagaaacaatg 1586787  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 316
Target Start/End: Original strand, 1587117 - 1587180
Alignment:
Q  250 agaaacaatggaaggagatcatgttcgccaagaaacaatggaaggagatgttatccaagaaacaatg 316  Q
    |||||||||||||||||||  |||   ||||||||||||||||| |||||||  |||||||| ||||    
T  1587117 agaaacaatggaaggagatgttgt---ccaagaaacaatggaagaagatgtttgccaagaaataatg 1587180  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 207 - 311
Target Start/End: Complemental strand, 19270950 - 19270846
Alignment:
Q  207 aagagttagcacaaatacagaaaatcaatcaacatctttgccaagaaacaatggaaggagatcatgttcgccaagaaacaatggaaggagatgttatcca 306  Q
    ||||||| ||||||||| ||||| || |||||| | ||  ||||||||||| |||| |||||||||||||||||||||||||||||  ||||||| ||||    
T  19270950 aagagttggcacaaataaagaaactctatcaacgtgttctccaagaaacaaaggaacgagatcatgttcgccaagaaacaatggaaaaagatgttgtcca 19270851  T
Q  307 agaaa 311  Q
    |||||    
T  19270850 agaaa 19270846  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 316
Target Start/End: Complemental strand, 19270718 - 19270652
Alignment:
Q  247 ccaagaaacaatggaaggagatcatgttcgccaagaaacaatggaaggagatgttatccaagaaacaatg 316  Q
    ||||||||||||||||||||||   |||| ||||||||| ||| ||| |||||||  |||||||||||||    
T  19270718 ccaagaaacaatggaaggagat---gttctccaagaaacgatgaaagaagatgtttgccaagaaacaatg 19270652  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 316
Target Start/End: Complemental strand, 19270752 - 19270706
Alignment:
Q  270 atgttcgccaagaaacaatggaaggagatgttatccaagaaacaatg 316  Q
    |||||| |||||||||||| |||| ||||||| ||||||||||||||    
T  19270752 atgttccccaagaaacaatagaagaagatgttgtccaagaaacaatg 19270706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 311
Target Start/End: Complemental strand, 19270826 - 19270765
Alignment:
Q  247 ccaagaaacaatggaaggagatcatgttcgccaagaaacaatggaaggagatgttatccaagaaa 311  Q
    |||||||||||| |||| ||||   |||| |||| |||||||||||||||||||| |||||||||    
T  19270826 ccaagaaacaatagaagaagat---gttctccaaaaaacaatggaaggagatgttgtccaagaaa 19270765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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