View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21269_low_21 (Length: 330)
Name: NF21269_low_21
Description: NF21269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21269_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 99 - 312
Target Start/End: Original strand, 48910379 - 48910592
Alignment:
| Q |
99 |
cttgtttgaatgaagatgatgttaaatgtttaatacagcagctaatgataataattttttcctttgggaggagcaaatagcagtttgataactttccata |
198 |
Q |
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| T |
48910379 |
cttgtttgaatgaagatgatgttaaatgtttaatacagcagctaatgataataattttttcctttgggaggagcaaatagcagtttgataactttccata |
48910478 |
T |
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| Q |
199 |
gtttctacaaacgtcattccaattcacaagttacaatacatgaaagaaaattgctattacccacaaccaatacttcatggagaaaaggaaaatcctccta |
298 |
Q |
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| T |
48910479 |
gtttctacaaacatcattccaattcacaagttacaatacatgaaagaatattgctattacccacaaccaatacttcatggagaaaaggaaaatcctccta |
48910578 |
T |
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| Q |
299 |
taacaggtcctgat |
312 |
Q |
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| T |
48910579 |
taacaggtcctgat |
48910592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 48910291 - 48910339
Alignment:
| Q |
11 |
cacagaggtagaagctggttatacttataaaaagtaggataacatgatc |
59 |
Q |
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| T |
48910291 |
cacaaaggtagaagcgggttatacttataaaaagtaggataacatgatc |
48910339 |
T |
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