View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21269_low_24 (Length: 304)
Name: NF21269_low_24
Description: NF21269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21269_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 44311205 - 44311405
Alignment:
| Q |
18 |
caattaacatattgtgatgtaaatctcaatttcaacttctctcctttcttaattttgttcctattattcgctcatcagttttagttttagataaaaaatg |
117 |
Q |
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| T |
44311205 |
caattaacatattgtgatgtaaatctcaatttcaacttctctcctttcttaattttgtttctattattcgctcatcagttttagttttagataaaaaatg |
44311304 |
T |
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| Q |
118 |
gaaaacgaattcaacaatttttcataaaattgaacccacatgctatgaatttttctaaaaatgttaaatttagaatcatagagattcttgacaacaatga |
217 |
Q |
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| T |
44311305 |
gaaaacgaattcaacaatttttcataaaattgaacccacatgctatgaatttttctaaaaatgttaaatttagaatcatagagattcttgacaacaatga |
44311404 |
T |
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| Q |
218 |
t |
218 |
Q |
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| T |
44311405 |
t |
44311405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 221 - 295
Target Start/End: Original strand, 44311654 - 44311728
Alignment:
| Q |
221 |
ttcacgtagtattattattctttgtgtctgcatttgtaagaaaagaagaaatgaactaacattcccaagaataat |
295 |
Q |
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| T |
44311654 |
ttcacatagtattattattcgttgtgtctgcatttttaagaaaagaagaaatgaactaacattcccaagaataat |
44311728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 18701454 - 18701528
Alignment:
| Q |
221 |
ttcacgtagtattattattctttgtgtctgcatttgtaagaaaagaa---gaaatgaactaacattcccaagaata |
293 |
Q |
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| T |
18701454 |
ttcacatagtattactattcgttgtgtctacaattgtaagaaaagaacaggaaatgaac-aacattctcaagaata |
18701528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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