View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21269_low_3 (Length: 661)
Name: NF21269_low_3
Description: NF21269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21269_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 167 - 650
Target Start/End: Complemental strand, 3308640 - 3308156
Alignment:
| Q |
167 |
gattgtttacacaatgcagcctgaaaatgatttgtttgcgggagagagcaaatatccaatttgaatcatgctacccctgattcgaatcaaccaagaaaaa |
266 |
Q |
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| T |
3308640 |
gattgtttacacaattcagcctgaaaatgatttatttgcgggagagagcaaatatcaaatttgaatcatgctacccctgattcgaatcaaccaagaaaaa |
3308541 |
T |
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| Q |
267 |
ca-gtgacttgaacccattttcaccaccaaggttcgaatcaatctttcaccccaattaccatgatttaaatcgtcacctctagaagctaaaaacacatat |
365 |
Q |
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| T |
3308540 |
aaagtgacttgaacccattttcaccaccaaggctcgaatcaacctttcaccccaattaccttgatttaaatcatcacctctagaagctaaaaacacatat |
3308441 |
T |
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| Q |
366 |
ttgaagacatactcgctataattctccactttgacttcaaataagtggtaatgctcaatatttacccatcaaccacttgttgctctcttgagtgctcgaa |
465 |
Q |
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| T |
3308440 |
ttgaagacatactcgccataattctccactttgacttcaaataagtggtaatgctcaatatttacccatcaaccacttgttgctctcttgagtgccgaaa |
3308341 |
T |
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| Q |
466 |
ttactcttcagcaaaactgatcaagtccaagaaattcttgaaccctgttataggcatcgacctccacttccatccaactaccctttgatccttaggtagt |
565 |
Q |
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| T |
3308340 |
ttactcttcagcaaaactgatcaagtccgagaaattcttgaaccctgttataggcatcgacctccacttccatccaactaccctttgatccttaggtagt |
3308241 |
T |
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| Q |
566 |
cctacaagttttcaagtttgattcttctccataaattcttttcctcattcactttcttcttccgtgaactcctttcctcattcat |
650 |
Q |
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| T |
3308240 |
cccacaagttttcaagtttgattcttctccatgaattcttttcctcattcactttcttcttccgtgaactcttttcctcattcat |
3308156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 3308819 - 3308668
Alignment:
| Q |
18 |
atagtaactttctactgtgaattcaacaagataa-gtggaacaaataacagcgagaaccaaaacta----gcccaagaaaatagcgatttaaactagaag |
112 |
Q |
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| T |
3308819 |
atagtaactttctattgtgaattcaacaagataaagtggaacaaataacagcgagaaccaaaactaaatagcccaagaaaatagcgatttaaactagaag |
3308720 |
T |
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| Q |
113 |
aaacctagaagcaatgtgcagagaaatcaaacaatcaatcgaaagaacaaaa |
164 |
Q |
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| T |
3308719 |
aaacctagaagcaatgtgtagagaaatcacaaaatcaatcgaaagaacaaaa |
3308668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 463 - 509
Target Start/End: Complemental strand, 4386426 - 4386380
Alignment:
| Q |
463 |
gaattactcttcagcaaaactgatcaagtccaagaaattcttgaacc |
509 |
Q |
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| T |
4386426 |
gaattactcttcaacaaaattgaccaagtccaagcaattcttgaacc |
4386380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 528 - 596
Target Start/End: Original strand, 16257296 - 16257364
Alignment:
| Q |
528 |
tccacttccatccaactaccctttgatccttaggtagtcctacaagttttcaagtttgattcttctcca |
596 |
Q |
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| T |
16257296 |
tccacttgcatccaactaccctttggtgtttaggtagctttacaagtttccaagtttggttcttttcca |
16257364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 528 - 596
Target Start/End: Complemental strand, 16626852 - 16626784
Alignment:
| Q |
528 |
tccacttccatccaactaccctttgatccttaggtagtcctacaagttttcaagtttgattcttctcca |
596 |
Q |
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| T |
16626852 |
tccacttgcatccaactaccctttggtgtttaggtagcttcacaagttttcaagtttggttcttttcca |
16626784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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