View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21269_low_30 (Length: 241)

Name: NF21269_low_30
Description: NF21269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21269_low_30
NF21269_low_30
[»] chr3 (20 HSPs)
chr3 (7-224)||(7586721-7586939)
chr3 (7-224)||(6839866-6840084)
chr3 (18-220)||(6795593-6795796)
chr3 (18-158)||(8470482-8470623)
chr3 (13-160)||(8569922-8570070)
chr3 (105-224)||(6932402-6932522)
chr3 (126-224)||(6486109-6486208)
chr3 (116-153)||(6141222-6141259)
chr3 (116-153)||(6237690-6237727)
chr3 (116-153)||(6244229-6244266)
chr3 (116-153)||(13271609-13271646)
chr3 (18-80)||(4389904-4389966)
chr3 (116-158)||(6592409-6592451)
chr3 (116-153)||(6167827-6167864)
chr3 (116-153)||(6258138-6258175)
chr3 (116-153)||(6264621-6264658)
chr3 (116-149)||(6916041-6916074)
chr3 (88-153)||(7748938-7749003)
chr3 (18-157)||(5266981-5267121)
chr3 (19-158)||(5297655-5297795)
[»] scaffold1643 (1 HSPs)
scaffold1643 (18-152)||(1089-1224)
[»] chr7 (1 HSPs)
chr7 (18-224)||(6574292-6574505)
[»] scaffold0958 (1 HSPs)
scaffold0958 (13-160)||(833-981)
[»] chr1 (1 HSPs)
chr1 (116-153)||(35141425-35141462)


Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 7586939 - 7586721
Alignment:
Q  7 ggagcacagagtgggtctgatattaaggagttgggtaatctcaatcatcttcaaggggaactttgtatttcagg-atggaacatgtcatcgatcccgtgg 105  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7586939 ggagaacagagtgggtctgatattaaggagttgggtaatctcaatcatcttcaaggggaactttgtatttcagggatggaacatgtcatcgatcccgtgg 7586840  T
Q  106 atgctgcaggagcaaatttgaaagataagaaacatgtagaagaattaaatatggagtggagttacaaatccaataccaatggaagagaatcagatgtctt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  7586839 atgctgcaggagcaaatttgaaagataagaaacatgtagaagaattaaatatggagtggagttacaaattcaacaccaatggaagagaatcagatgtctt 7586740  T
Q  206 tgaggctcttcaaccaaat 224  Q
    |||||||||||||||||||    
T  7586739 tgaggctcttcaaccaaat 7586721  T

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Target: chr3; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 6839866 - 6840084
Alignment:
Q  7 ggagcacagagtgggtctgatattaaggagttgggtaatctcaatcatcttcaaggggaactttgtatttcaggat-ggaacatgtcatcgatcccgtgg 105  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||   || ||  |    
T  6839866 ggagaacagagtgggtctgatattacggagttgggtaatctcaatcatcttcaagggaaactttgtatttcaggattggaacatgtcattagtctcgaag 6839965  T
Q  106 atgctgcaggagcaaatttgaaagataagaaacatgtagaagaattaaatatggagtggagttacaaatccaataccaatggaagagaatcagatgtctt 205  Q
    |||| |||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| || ||||||||    
T  6839966 atgcggcagcagcaaaattgaaagataaggaacatgtagaagaattaaatatggagtggagttacaaatttaataccaatggaagagagtcggatgtctt 6840065  T
Q  206 tgaggctcttcaaccaaat 224  Q
    |||||||||||||||||||    
T  6840066 tgaggctcttcaaccaaat 6840084  T

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Target: chr3; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 6795593 - 6795796
Alignment:
Q  18 tgggtctgatattaaggagttgggtaatctcaatcatcttcaaggggaactttgtatttcaggat-ggaacatgtcatcgatcccgtggatgctgcagga 116  Q
    ||||||| ||||| ||||||||||||| |||||||||||||||||  ||||| |||||| | ||| ||||||||||||  |||| |  ||||| ||||||    
T  6795593 tgggtctaatattcaggagttgggtaaactcaatcatcttcaaggaaaacttagtattttatgattggaacatgtcattaatcctgaagatgcggcagga 6795692  T
Q  117 gcaaatttgaaagataagaaacatgtagaagaattaaatatggagtggagttacaaatccaataccaatggaagagaatcagatgtctttgaggctcttc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||  |||||||||||||||||||    
T  6795693 gcaaatttgaaagataagaaacatgtagaagaattaaatatggagtggagttacaaattcaacaacaatggaagagaattggatgtctttgaggctcttc 6795792  T
Q  217 aacc 220  Q
    ||||    
T  6795793 aacc 6795796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 8470623 - 8470482
Alignment:
Q  18 tgggtctgatattaaggagttgggtaatctcaatcatcttcaaggggaactttgtatttcaggat-ggaacatgtcatcgatcccgtggatgctgcagga 116  Q
    ||||||| ||||| ||||||||||||| ||||||| ||||| |||| |||||||||||||||| | ||||||||||||  ||||||  ||||| ||||||    
T  8470623 tgggtctaatattcaggagttgggtaagctcaatcgtcttcgagggaaactttgtatttcagggttggaacatgtcattaatcccgaagatgcagcagga 8470524  T
Q  117 gcaaatttgaaagataagaaacatgtagaagaattaaatatg 158  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  8470523 gcaaatttgaaagataagaaacatgtagaagaattaaatatg 8470482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 13 - 160
Target Start/End: Original strand, 8569922 - 8570070
Alignment:
Q  13 cagagtgggtctgatattaaggagttgggtaatctcaatcatcttcaaggggaactttgtatttcagg-atggaacatgtcatcgatcccgtggatgctg 111  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||  ||||| |||| || ||||| | ||||||||    
T  8569922 cagagtggatctgatattaaggagttggataatctcaatcatcttcgagggaaactttgtatttcaggtttggaaaatgtaattgatccagcggatgctg 8570021  T
Q  112 caggagcaaatttgaaagataagaaacatgtagaagaattaaatatgga 160  Q
    ||| ||  |||||||||||||| |||||| |||||||||||| ||||||    
T  8570022 cagaagtcaatttgaaagataaaaaacatctagaagaattaagtatgga 8570070  T

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Target: chr3; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 105 - 224
Target Start/End: Complemental strand, 6932522 - 6932402
Alignment:
Q  105 gatgctgcaggagcaaatttgaaagataagaaacatgtagaagaattaaatatggagtggagttacaaatccaataccaatggaagagaatcagatgtct 204  Q
    |||||||||  ||||| ||| ||||||||||||||| ||||||| ||| ||||| ||||||| ||| ||| ||||||||||||||||||||  |||||||    
T  6932522 gatgctgcataagcaagttttaaagataagaaacatttagaagagttacatatgaagtggagatacgaattcaataccaatggaagagaattggatgtct 6932423  T
Q  205 t-tgaggctcttcaaccaaat 224  Q
    | ||||||||||||| |||||    
T  6932422 tgtgaggctcttcaatcaaat 6932402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 126 - 224
Target Start/End: Original strand, 6486109 - 6486208
Alignment:
Q  126 aaagataagaaacatgtagaagaattaaatatggagtggagttacaaatccaataccaatggaagagaatcagatgtctt-tgaggctcttcaaccaaat 224  Q
    ||||||||||||||| ||||||| ||| ||||| ||||||||||| ||| ||||||||||||||||||||  |||||||| ||||||||||||| |||||    
T  6486109 aaagataagaaacatttagaagagttacatatgaagtggagttacgaattcaataccaatggaagagaattggatgtcttgtgaggctcttcaatcaaat 6486208  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 6141259 - 6141222
Alignment:
Q  116 agcaaatttgaaagataagaaacatgtagaagaattaa 153  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  6141259 agcaaatttgaaagataagaaacatttagaagaattaa 6141222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 6237727 - 6237690
Alignment:
Q  116 agcaaatttgaaagataagaaacatgtagaagaattaa 153  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  6237727 agcaaatttgaaagataagaaacatttagaagaattaa 6237690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 6244266 - 6244229
Alignment:
Q  116 agcaaatttgaaagataagaaacatgtagaagaattaa 153  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  6244266 agcaaatttgaaagataagaaacatttagaagaattaa 6244229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 13271609 - 13271646
Alignment:
Q  116 agcaaatttgaaagataagaaacatgtagaagaattaa 153  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  13271609 agcaaatttgaaagataagaaacatttagaagaattaa 13271646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 4389904 - 4389966
Alignment:
Q  18 tgggtctgatattaaggagttgggtaatctcaatcatcttcaaggggaactttgtatttcagg 80  Q
    ||||||||||||||||||||||    | ||||| || ||||||||| ||||||||||||||||    
T  4389904 tgggtctgatattaaggagttgacggaactcaaccagcttcaagggaaactttgtatttcagg 4389966  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 6592409 - 6592451
Alignment:
Q  116 agcaaatttgaaagataagaaacatgtagaagaattaaatatg 158  Q
    ||||||||||||||||||||||||| || ||||||||| ||||    
T  6592409 agcaaatttgaaagataagaaacatttaaaagaattaagtatg 6592451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 6167864 - 6167827
Alignment:
Q  116 agcaaatttgaaagataagaaacatgtagaagaattaa 153  Q
    ||||||||||||||||||||||||| || |||||||||    
T  6167864 agcaaatttgaaagataagaaacatttacaagaattaa 6167827  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 6258175 - 6258138
Alignment:
Q  116 agcaaatttgaaagataagaaacatgtagaagaattaa 153  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  6258175 agcaaatttgaaagagaagaaacatttagaagaattaa 6258138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 6264658 - 6264621
Alignment:
Q  116 agcaaatttgaaagataagaaacatgtagaagaattaa 153  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  6264658 agcaaatttgaaacataagaaacatttagaagaattaa 6264621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 6916074 - 6916041
Alignment:
Q  116 agcaaatttgaaagataagaaacatgtagaagaa 149  Q
    ||||||||||||||||||||||||| ||||||||    
T  6916074 agcaaatttgaaagataagaaacatttagaagaa 6916041  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 153
Target Start/End: Complemental strand, 7749003 - 7748938
Alignment:
Q  88 atgtcatcgatcccgtggatgctgcaggagcaaatttgaaagataagaaacatgtagaagaattaa 153  Q
    |||||||||||||||  |||||||  | |||||||||| |||||||  ||||| ||||||||||||    
T  7749003 atgtcatcgatcccgctgatgctgtggcagcaaatttggaagataaagaacatttagaagaattaa 7748938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 5267121 - 5266981
Alignment:
Q  18 tgggtctgatattaaggagttgggtaatctcaatcatcttcaaggggaactttgtatttca-ggatggaacatgtcatcgatcccgtggatgctgcagga 116  Q
    |||||||| ||||||||||||||   | || || || ||||||||| |||||||||||||| || ||||| |||||||  |||| || || | || || |    
T  5267121 tgggtctggtattaaggagttggcggaacttaaccagcttcaagggaaactttgtatttcagggttggaaaatgtcattaatcctgtagacgttgtagaa 5267022  T
Q  117 gcaaatttgaaagataagaaacatgtagaagaattaaatat 157  Q
    ||||  || ||||||||||| ||| | ||||||||| ||||    
T  5267021 gcaacattaaaagataagaagcatttggaagaattacatat 5266981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 5297795 - 5297655
Alignment:
Q  19 gggtctgatattaaggagttgggtaatctcaatcatcttcaaggggaactttgtatttca-ggatggaacatgtcatcgatcccgtggatgctgcaggag 117  Q
    |||||||||||||| |||||||  || ||||| |||||||||||   |||| |||||||| || ||||| ||||||| ||||  |||||||| |    ||    
T  5297795 gggtctgatattaatgagttggcaaaactcaaccatcttcaaggtacacttcgtatttcagggttggaaaatgtcattgatcgtgtggatgcagtgacag 5297696  T
Q  118 caaatttgaaagataagaaacatgtagaagaattaaatatg 158  Q
    |||||||| || | |||||| || |||| |||||| |||||    
T  5297695 caaatttgcaaaaaaagaaagatttagacgaattacatatg 5297655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1643 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold1643
Description:

Target: scaffold1643; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 1224 - 1089
Alignment:
Q  18 tgggtctgatattaaggagttgggtaatctcaatcatcttcaaggggaactttgtatttcaggat-ggaacatgtcatcgatcccgtggatgctgcagga 116  Q
    ||||||| ||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||| ||||||  ||||| ||| ||    
T  1224 tgggtctaatattcaggagttgggtaatctcaatcgtcttcaagggaaactttgtatttcaggattggaacatgtcatcaatcccgaagatgcggcaaga 1125  T
Q  117 gcaaatttgaaagataagaaacatgtagaagaatta 152  Q
    ||||||||||||||||||||||||||||||||||||    
T  1124 gcaaatttgaaagataagaaacatgtagaagaatta 1089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 6574292 - 6574505
Alignment:
Q  18 tgggtctgatattaaggagttgggtaatctcaatcatcttcaaggggaactttgtatttcaggat-ggaacatgtcatcgatcccgtggatgctgcagga 116  Q
    ||||||||||||||||||||||| |||||| |||||||||||||| | ||||   |||||||| | ||||||||||||  ||||||  |||||||||| |    
T  6574292 tgggtctgatattaaggagttggataatcttaatcatcttcaaggaggacttcacatttcagggttggaacatgtcattaatcccgcagatgctgcagaa 6574391  T
Q  117 gcaaatttgaaagataagaaacatgtagaagaattaaatatgga-----gtg-gagttacaaatccaataccaatggaagagaatcagatgtctttgagg 210  Q
    |||||||||||||||||||||||| || |||| ||| |||||||     |||  ||||  |||| ||||| ||||||||||||||  |||||||||||||    
T  6574392 gcaaatttgaaagataagaaacatctaaaagagttatatatggattatggtgacagtttgaaattcaataacaatggaagagaattggatgtctttgagg 6574491  T
Q  211 ctcttcaaccaaat 224  Q
    |||||| |||||||    
T  6574492 ctcttcgaccaaat 6574505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0958 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0958
Description:

Target: scaffold0958; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 160
Target Start/End: Original strand, 833 - 981
Alignment:
Q  13 cagagtgggtctgatattaaggagttgggtaatctcaatcatcttcaaggggaactttgtatttcagg-atggaacatgtcatcgatcccgtggatgctg 111  Q
    |||||||| | ||||||||||||||||| ||||||||||| ||||| |||| ||||||||||||| ||  ||||| || |||| ||||| | |||| |||    
T  833 cagagtggatatgatattaaggagttggataatctcaatcgtcttcgagggaaactttgtatttccggtttggaaaatatcattgatccagcggatactg 932  T
Q  112 caggagcaaatttgaaagataagaaacatgtagaagaattaaatatgga 160  Q
    ||| ||  ||||| |||||||| |||||| |||||||||||| ||||||    
T  933 cagaagtcaatttaaaagataaaaaacatatagaagaattaagtatgga 981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 35141425 - 35141462
Alignment:
Q  116 agcaaatttgaaagataagaaacatgtagaagaattaa 153  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  35141425 agcaaatttgaaagataagaaacatttagaagaattaa 35141462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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