View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21269_low_32 (Length: 240)

Name: NF21269_low_32
Description: NF21269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21269_low_32
NF21269_low_32
[»] chr2 (11 HSPs)
chr2 (38-199)||(31511104-31511265)
chr2 (25-137)||(13516157-13516269)
chr2 (27-196)||(3264074-3264241)
chr2 (110-199)||(3263947-3264037)
chr2 (101-144)||(30558836-30558879)
chr2 (104-137)||(23243737-23243770)
chr2 (159-201)||(23243731-23243773)
chr2 (104-137)||(26383796-26383829)
chr2 (156-197)||(32316069-32316110)
chr2 (104-133)||(43677690-43677719)
chr2 (105-137)||(34603771-34603803)
[»] chr3 (12 HSPs)
chr3 (22-198)||(28425954-28426131)
chr3 (22-197)||(11513382-11513557)
chr3 (51-198)||(808983-809128)
chr3 (149-201)||(11513447-11513499)
chr3 (104-145)||(15926960-15927001)
chr3 (156-201)||(809027-809072)
chr3 (104-198)||(809237-809329)
chr3 (101-133)||(19979921-19979953)
chr3 (94-142)||(28426088-28426136)
chr3 (158-201)||(10497453-10497496)
chr3 (104-137)||(14259844-14259877)
chr3 (158-198)||(20098202-20098242)
[»] chr7 (16 HSPs)
chr7 (22-143)||(18310155-18310277)
chr7 (95-197)||(779253-779356)
chr7 (47-198)||(779314-779464)
chr7 (101-199)||(2592025-2592124)
chr7 (110-198)||(10302188-10302277)
chr7 (104-145)||(9068818-9068859)
chr7 (98-137)||(2592150-2592189)
chr7 (22-84)||(4154707-4154769)
chr7 (101-137)||(2724438-2724474)
chr7 (139-198)||(4154628-4154687)
chr7 (167-201)||(2724443-2724477)
chr7 (154-199)||(779375-779420)
chr7 (104-133)||(3100820-3100849)
chr7 (158-199)||(8272984-8273025)
chr7 (162-198)||(9068815-9068851)
chr7 (169-201)||(10302247-10302279)
[»] chr1 (10 HSPs)
chr1 (22-199)||(23352985-23353164)
chr1 (107-199)||(22224766-22224859)
chr1 (100-142)||(30510363-30510405)
chr1 (139-198)||(20805983-20806042)
chr1 (167-201)||(20194671-20194705)
chr1 (168-201)||(19454143-19454176)
chr1 (104-137)||(20194669-20194702)
chr1 (105-142)||(20805978-20806015)
chr1 (157-201)||(18620773-18620817)
chr1 (110-142)||(24277324-24277356)
[»] scaffold0050 (4 HSPs)
scaffold0050 (22-136)||(74487-74601)
scaffold0050 (167-202)||(74187-74222)
scaffold0050 (146-197)||(74487-74538)
scaffold0050 (104-137)||(74191-74224)
[»] scaffold0010 (1 HSPs)
scaffold0010 (105-198)||(124016-124109)
[»] chr5 (6 HSPs)
chr5 (105-201)||(26067469-26067566)
chr5 (111-198)||(21240325-21240413)
chr5 (94-142)||(43177271-43177319)
chr5 (156-198)||(43177276-43177318)
chr5 (22-80)||(26067649-26067707)
chr5 (152-197)||(26067535-26067580)
[»] scaffold0011 (2 HSPs)
scaffold0011 (73-137)||(253999-254063)
scaffold0011 (73-137)||(260605-260669)
[»] chr8 (6 HSPs)
chr8 (153-196)||(15699561-15699604)
chr8 (101-137)||(35577098-35577134)
chr8 (167-202)||(35577103-35577138)
chr8 (104-145)||(16078055-16078097)
chr8 (95-135)||(15699561-15699601)
chr8 (110-142)||(22191724-22191756)
[»] chr4 (5 HSPs)
chr4 (104-145)||(10235485-10235526)
chr4 (102-137)||(52388678-52388713)
chr4 (104-145)||(22762731-22762773)
chr4 (167-201)||(22762733-22762767)
chr4 (167-201)||(52388675-52388709)
[»] scaffold0024 (1 HSPs)
scaffold0024 (141-198)||(120907-120964)
[»] chr6 (1 HSPs)
chr6 (104-136)||(23107330-23107362)


Alignment Details
Target: chr2 (Bit Score: 102; Significance: 9e-51; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 38 - 199
Target Start/End: Complemental strand, 31511265 - 31511104
Alignment:
Q  38 cgaaggacatgtaaaatgcagatattgcccatactccaatatcaaaagagcaatgatataactaaccactttgccttgtcccaagactcgtgcttggggg 137  Q
    |||||||||||||||| |||||||||||||| ||||||||||| ||||||||| | ||||||||||||||| ||||| ||| ||||||||||| ||||||    
T  31511265 cgaaggacatgtaaaaagcagatattgcccacactccaatatcgaaagagcaacgttataactaaccacttcgccttatccaaagactcgtgcatggggg 31511166  T
Q  138 ctgtgaactagcgacttcataattaatcccttcgccttgtctcaagactcgtgcttgggggg 199  Q
    ||||| ||||  |||||||||||||||| || ||||||||| ||||||||||||||||||||    
T  31511165 ctgtggactattgacttcataattaatcactccgccttgtcccaagactcgtgcttgggggg 31511104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 137
Target Start/End: Complemental strand, 13516269 - 13516157
Alignment:
Q  25 ctaatgaactcgtcgaaggacatgtaaaatgcagatattgcccatactccaatatcaaaagagcaatgatataactaaccactttgccttgtcccaagac 124  Q
    |||||||||||||| | |||||||||||||  || |||||||||||||||||||||||| |||||| | ||| |||||||| || |||||||||||||||    
T  13516269 ctaatgaactcgtccagggacatgtaaaatttagttattgcccatactccaatatcaaaggagcaacgttattactaaccatttcgccttgtcccaagac 13516170  T
Q  125 tcgtgcttggggg 137  Q
    ||||| |||||||    
T  13516169 tcgtgtttggggg 13516157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 196
Target Start/End: Complemental strand, 3264241 - 3264074
Alignment:
Q  27 aatgaactcgtcgaaggacatgtaaaatgcagatattgcccatactccaatatcaaaagagcaatgatataactaaccactttgccttgtcccaagactc 126  Q
    |||||||||| |||||||||||||||||||| || |  | |||||||||||||| ||| | |||   ||||| ||||||||| | |||| || |||||||    
T  3264241 aatgaactcgccgaaggacatgtaaaatgcaaatgtctctcatactccaatatccaaa-atcaactgtataattaaccacttcgtcttgacctaagactc 3264143  T
Q  127 gtgcttgggggctgtgaactagcgacttcataattaatcccttcgccttgtctcaagactcgtgcttggg 196  Q
    |||  |||||| |||| |||| | ||||| |||||| || ||| |||||| | ||||||||||| |||||    
T  3264142 gtgtgtgggggatgtggactatcaacttc-taattagtcactttgccttgacccaagactcgtgtttggg 3264074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 3264037 - 3263947
Alignment:
Q  110 gccttgtcccaagactcgtgcttg-ggggctgtgaactagcgacttcataattaatcccttcgccttgtctcaagactcgtgcttgggggg 199  Q
    |||||| ||||||||||||||||| |||| |||| |||| | | ||||||||||||| || | |||||| ||||||||||| |||||||||    
T  3264037 gccttgacccaagactcgtgcttgaggggttgtggactatcaaattcataattaatcactccaccttgtgtcaagactcgtacttgggggg 3263947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 144
Target Start/End: Complemental strand, 30558879 - 30558836
Alignment:
Q  101 aaccactttgccttgtcccaagactcgtgcttgggggctgtgaa 144  Q
    |||||||| ||||| |||||||||||||||||||||||||||||    
T  30558879 aaccacttcgccttctcccaagactcgtgcttgggggctgtgaa 30558836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 137
Target Start/End: Original strand, 23243737 - 23243770
Alignment:
Q  104 cactttgccttgtcccaagactcgtgcttggggg 137  Q
    ||||||||||||||||||||||||||||||||||    
T  23243737 cactttgccttgtcccaagactcgtgcttggggg 23243770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 201
Target Start/End: Original strand, 23243731 - 23243773
Alignment:
Q  159 attaatcccttcgccttgtctcaagactcgtgcttggggggct 201  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||    
T  23243731 attaatcactttgccttgtcccaagactcgtgcttggggggct 23243773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 137
Target Start/End: Original strand, 26383796 - 26383829
Alignment:
Q  104 cactttgccttgtcccaagactcgtgcttggggg 137  Q
    ||||| ||||||||||||||||||||||||||||    
T  26383796 cacttcgccttgtcccaagactcgtgcttggggg 26383829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 32316110 - 32316069
Alignment:
Q  156 ataattaatcccttcgccttgtctcaagactcgtgcttgggg 197  Q
    |||||||||| |||||||||||| ||||||||||| ||||||    
T  32316110 ataattaatcacttcgccttgtcccaagactcgtgtttgggg 32316069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 133
Target Start/End: Complemental strand, 43677719 - 43677690
Alignment:
Q  104 cactttgccttgtcccaagactcgtgcttg 133  Q
    ||||||||||||||||||||||||||||||    
T  43677719 cactttgccttgtcccaagactcgtgcttg 43677690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 34603771 - 34603803
Alignment:
Q  105 actttgccttgtcccaagactcgtgcttggggg 137  Q
    |||||||||||| ||||||||||||||||||||    
T  34603771 actttgccttgttccaagactcgtgcttggggg 34603803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 198
Target Start/End: Original strand, 28425954 - 28426131
Alignment:
Q  22 acactaatgaactcgtcgaaggacatgtaaaatgcagatattgcccatactccaatatcaaaagagcaatgatataactaaccactttgccttgtcccaa 121  Q
    |||| ||||||||||  |||||||||||||||||||||||||||||| |||| |||||| |||||||||   ||||||||||||||| ||||| ||| ||    
T  28425954 acaccaatgaactcgctgaaggacatgtaaaatgcagatattgcccacactcaaatatcgaaagagcaacattataactaaccacttcgccttatcctaa 28426053  T
Q  122 gactcgtgcttgggg-gctgtgaactagcgacttcataattaatcccttcgccttgtctcaagactcgtgcttggggg 198  Q
    ||||| ||||||||| | |||| |||| ||| || ||||||||||  || |||||||| ||||||| |||||||||||    
T  28426054 gactcatgcttggggagttgtggactatcgaatttataattaatcattttgccttgtcccaagacttgtgcttggggg 28426131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 197
Target Start/End: Original strand, 11513382 - 11513557
Alignment:
Q  22 acactaatgaactcgtcgaaggacatgtaaaatgcagatattgcccatactccaa-tatcaaaagagcaatgatataactaaccactttgccttgtccca 120  Q
    |||| |||||||||| |||| ||||| |||||||||||||||||||||| ||||| |||| | |  |   | |||  | ||| |||||  ||||||||||    
T  11513382 acaccaatgaactcgccgaacgacatataaaatgcagatattgcccatattccaaatatcgacatcgacttcata--attaatcacttcaccttgtccca 11513479  T
Q  121 agactcgtgcttggggg-ctgtgaactagcgacttcataattaatcccttcgccttgtctcaagactcgtgcttgggg 197  Q
    ||||||||||||||||| ||||| |||| |  ||||| |||||||  |||||||||||| ||||||||||||||||||    
T  11513480 agactcgtgcttggggggctgtggactatcaccttcacaattaataacttcgccttgtcccaagactcgtgcttgggg 11513557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 198
Target Start/End: Original strand, 808983 - 809128
Alignment:
Q  51 aaatgcagatattgcccatactccaatatcaaaagagcaatgatataactaaccactttgccttgtcccaagactcgtgctt-gggggctgtgaactagc 149  Q
    ||||||||||||  |||||  ||| |||||||||||||||   ||||| ||| ||||| ||||||||||||||||||| ||| |||||||||| |||| |    
T  808983 aaatgcagatatcacccatcttccgatatcaaaagagcaacattataattaatcacttcgccttgtcccaagactcgttcttggggggctgtggactatc 809082  T
Q  150 gacttcataattaatcccttcgccttgtctcaagactcgtgcttggggg 198  Q
    ||||  |||   ||||  ||||||||||| |||||||| || |||||||    
T  809083 gactatata---aatcatttcgccttgtcccaagactcatgtttggggg 809128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 11513447 - 11513499
Alignment:
Q  149 cgacttcataattaatcccttcgccttgtctcaagactcgtgcttggggggct 201  Q
    ||||||||||||||||| |||| ||||||| ||||||||||||||||||||||    
T  11513447 cgacttcataattaatcacttcaccttgtcccaagactcgtgcttggggggct 11513499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 15927001 - 15926960
Alignment:
Q  104 cactttgccttgtcccaagactcgtgcttgggggctgtgaac 145  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  15927001 cacttcgccttgtcccaagactcgtgcttgggggctgtgaac 15926960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 809027 - 809072
Alignment:
Q  156 ataattaatcccttcgccttgtctcaagactcgtgcttggggggct 201  Q
    |||||||||| |||||||||||| |||||||||| |||||||||||    
T  809027 ataattaatcacttcgccttgtcccaagactcgttcttggggggct 809072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 198
Target Start/End: Original strand, 809237 - 809329
Alignment:
Q  104 cactttgccttgtcccaagactcgtgcttgggggct-gtgaactagcgacttcataattaatcccttcgccttgtctcaagactcgtgcttggggg 198  Q
    ||||||||||| || ||||||||||||||||||| | ||| |||| |||||  ||||   ||| ||||||||| || |||||||||||||||||||    
T  809237 cactttgccttctctcaagactcgtgcttggggggttgtggactatcgactatataa---atcacttcgccttctcccaagactcgtgcttggggg 809329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 133
Target Start/End: Original strand, 19979921 - 19979953
Alignment:
Q  101 aaccactttgccttgtcccaagactcgtgcttg 133  Q
    |||||||||||||||||||||||||||||||||    
T  19979921 aaccactttgccttgtcccaagactcgtgcttg 19979953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 28426088 - 28426136
Alignment:
Q  94 tataactaaccactttgccttgtcccaagactcgtgcttgggggctgtg 142  Q
    ||||| ||| || ||||||||||||||||||| ||||||||||||||||    
T  28426088 tataattaatcattttgccttgtcccaagacttgtgcttgggggctgtg 28426136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 201
Target Start/End: Original strand, 10497453 - 10497496
Alignment:
Q  158 aattaatcccttcgccttgtctcaagactcgtgcttggggggct 201  Q
    |||||||| |||||||||||| ||||||||||||||||| ||||    
T  10497453 aattaatcacttcgccttgtcccaagactcgtgcttgggtggct 10497496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 137
Target Start/End: Complemental strand, 14259877 - 14259844
Alignment:
Q  104 cactttgccttgtcccaagactcgtgcttggggg 137  Q
    |||||| |||||||||||||||||||||||||||    
T  14259877 cactttaccttgtcccaagactcgtgcttggggg 14259844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 20098242 - 20098202
Alignment:
Q  158 aattaatcccttcgccttgtctcaagactcgtgcttggggg 198  Q
    |||||||| |||||||||||| ||| |||||||||||||||    
T  20098242 aattaatcacttcgccttgtcccaacactcgtgcttggggg 20098202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 18310155 - 18310277
Alignment:
Q  22 acactaatgaactcgtcgaaggacatgtaaaatgcagatattgcccatactccaatatcaaaagagcaatgatataactaaccactttgccttgtcccaa 121  Q
    |||| |||||||||| | ||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  18310155 acaccaatgaactcgccaaaggacatgtaaaatgcagttattggccatactgcaatatcgaaagagcaatgttataactaaccacttcgccttgtcccaa 18310254  T
Q  122 gactcgtgcttg-ggggctgtga 143  Q
    |||| || |||| ||||||||||    
T  18310255 gacttgttcttgaggggctgtga 18310277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 95 - 197
Target Start/End: Complemental strand, 779356 - 779253
Alignment:
Q  95 ataactaaccactttgccttgtcccaagactcgtgcttggggg-ctgtgaactagcgacttcataattaatcccttcgccttgtctcaagactcgtgctt 193  Q
    |||| ||| ||||| || |||| ||||||||||||||| |||| ||||| |||| ||||||||||||||||| |||||||||||| ||||||||||||||    
T  779356 ataattaatcacttcgctttgttccaagactcgtgcttcggggactgtggactatcgacttcataattaatcacttcgccttgtcccaagactcgtgctt 779257  T
Q  194 gggg 197  Q
    ||||    
T  779256 gggg 779253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 47 - 198
Target Start/End: Complemental strand, 779464 - 779314
Alignment:
Q  47 tgtaaaatgcagatattgcccatactccaatatcaaaagagcaatgatataactaaccactttgccttgtcccaagactcgtgcttgggggct-gtgaac 145  Q
    ||||||||| |||  | ||||||||||||||||| ||| |  || |  |||| ||| ||||||||||||| |||||||||||||||||||| | ||| ||    
T  779464 tgtaaaatgaagacgtcgcccatactccaatatccaaaca--aaagtcataattaatcactttgccttgttccaagactcgtgcttggggggttgtggac 779367  T
Q  146 tagcgacttcataattaatcccttcgccttgtctcaagactcgtgcttggggg 198  Q
    || ||||||||||||||||| |||||| ||||  |||||||||||||| ||||    
T  779366 tatcgacttcataattaatcacttcgctttgttccaagactcgtgcttcgggg 779314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 199
Target Start/End: Complemental strand, 2592124 - 2592025
Alignment:
Q  101 aaccactttgccttgtcccaagactcgtgcttggggg-ctgtgaactagcgacttcataattaatcccttcgccttgtctcaagactcgtgcttgggggg 199  Q
    |||| ||| |||||||||||||  | ||||||||||| || ||||||| ||||| |||| ||||||| ||||||||||| ||||||| ||||||||||||    
T  2592124 aacctcttcgccttgtcccaagggttgtgcttggggggctatgaactatcgactccatagttaatcctttcgccttgtcccaagacttgtgcttgggggg 2592025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 198
Target Start/End: Complemental strand, 10302277 - 10302188
Alignment:
Q  110 gccttgtcccaagactcgtgcttg-ggggctgtgaactagcgacttcataattaatcccttcgccttgtctcaagactcgtgcttggggg 198  Q
    |||||||||||||||||||||||| |||||| ||||||| || ||||||| |||||   ||| ||||||| ||||||||||||| |||||    
T  10302277 gccttgtcccaagactcgtgcttggggggctatgaactatcggcttcatagttaataatttcaccttgtcccaagactcgtgctaggggg 10302188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 9068818 - 9068859
Alignment:
Q  104 cactttgccttgtcccaagactcgtgcttgggggctgtgaac 145  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  9068818 cacttcgccttgtcccaagactcgtgcttgggggctgtgaac 9068859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 2592189 - 2592150
Alignment:
Q  98 actaaccactttgccttgtcccaagactcgtgcttggggg 137  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  2592189 actaaccactttgcctcgtcccaagactcgtgcttggggg 2592150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 4154769 - 4154707
Alignment:
Q  22 acactaatgaactcgtcgaaggacatgtaaaatgcagatattgcccatactccaatatcaaaa 84  Q
    ||||| ||||| ||| ||||||| || ||||||||||||||| |||||| |||||||||||||    
T  4154769 acactgatgaattcgccgaaggatatataaaatgcagatatttcccatattccaatatcaaaa 4154707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 2724438 - 2724474
Alignment:
Q  101 aaccactttgccttgtcccaagactcgtgcttggggg 137  Q
    |||||||| ||||||||||||||||||||||||||||    
T  2724438 aaccacttcgccttgtcccaagactcgtgcttggggg 2724474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 4154687 - 4154628
Alignment:
Q  139 tgtgaactagcgacttcataattaatcccttcgccttgtctcaagactcgtgcttggggg 198  Q
    |||| |||| |||||||||||||||||   ||| |||||| |||||||||||||||||||    
T  4154687 tgtggactatcgacttcataattaatcatgtcgtcttgtcccaagactcgtgcttggggg 4154628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 201
Target Start/End: Original strand, 2724443 - 2724477
Alignment:
Q  167 cttcgccttgtctcaagactcgtgcttggggggct 201  Q
    |||||||||||| ||||||||||||||||||||||    
T  2724443 cttcgccttgtcccaagactcgtgcttggggggct 2724477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 779420 - 779375
Alignment:
Q  154 tcataattaatcccttcgccttgtctcaagactcgtgcttgggggg 199  Q
    |||||||||||| ||| |||||||  ||||||||||||||||||||    
T  779420 tcataattaatcactttgccttgttccaagactcgtgcttgggggg 779375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 133
Target Start/End: Complemental strand, 3100849 - 3100820
Alignment:
Q  104 cactttgccttgtcccaagactcgtgcttg 133  Q
    ||||||||||||||||||||||||||||||    
T  3100849 cactttgccttgtcccaagactcgtgcttg 3100820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 8273025 - 8272984
Alignment:
Q  158 aattaatcccttcgccttgtctcaagactcgtgcttgggggg 199  Q
    |||| ||| ||||||||||||||||||||| |||||||||||    
T  8273025 aattcatcacttcgccttgtctcaagactcatgcttgggggg 8272984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 9068815 - 9068851
Alignment:
Q  162 aatcccttcgccttgtctcaagactcgtgcttggggg 198  Q
    |||| |||||||||||| |||||||||||||||||||    
T  9068815 aatcacttcgccttgtcccaagactcgtgcttggggg 9068851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 201
Target Start/End: Complemental strand, 10302279 - 10302247
Alignment:
Q  169 tcgccttgtctcaagactcgtgcttggggggct 201  Q
    |||||||||| ||||||||||||||||||||||    
T  10302279 tcgccttgtcccaagactcgtgcttggggggct 10302247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 22 - 199
Target Start/End: Original strand, 23352985 - 23353164
Alignment:
Q  22 acactaatgaactcgtcgaaggacatgtaaaatgcagatattgcccatactccaatatcaaaagagcaatgatataactaaccactttgccttgtcccaa 121  Q
    |||| |||||||||| ||||||   |||| ||| ||||||| ||||||||||||||||||||| |||||   || |||||||| |||  |||||||| ||    
T  23352985 acaccaatgaactcgccgaaggtattgtacaatacagatatcgcccatactccaatatcaaaa-agcaacattacaactaaccgcttcaccttgtcctaa 23353083  T
Q  122 gactcgtgcttggggg---ctgtgaactagcgacttcataattaatcccttcgccttgtctcaagactcgtgcttgggggg 199  Q
    ||||||||||||||||   ||||| || | ||| ||||||||||||| |||||||||||| ||||||| ||||||||||||    
T  23353084 gactcgtgcttgggggggactgtggaccatcgaattcataattaatcacttcgccttgtcccaagacttgtgcttgggggg 23353164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 107 - 199
Target Start/End: Complemental strand, 22224859 - 22224766
Alignment:
Q  107 tttgccttgtcccaagactcgtgcttgggg-gctgtgaactagcgacttcataattaatcccttcgccttgtctcaagactcgtgcttgggggg 199  Q
    |||||||||||||||||||||||||||||| ||| ||||||| |||||||||| ||||||  || |||||||| ||||||||||||| ||||||    
T  22224859 tttgccttgtcccaagactcgtgcttggggagctatgaactatcgacttcatagttaatcattttgccttgtcccaagactcgtgctagggggg 22224766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 142
Target Start/End: Original strand, 30510363 - 30510405
Alignment:
Q  100 taaccactttgccttgtcccaagactcgtgcttgggggctgtg 142  Q
    ||||||||| ||||||||||||||||||||||||||| |||||    
T  30510363 taaccacttcgccttgtcccaagactcgtgcttggggactgtg 30510405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 20806042 - 20805983
Alignment:
Q  139 tgtgaactagcgacttcataattaatcccttcgccttgtctcaagactcgtgcttggggg 198  Q
    ||||||||| | ||||||||||||||  ||| |||||||| ||||| |||||||||||||    
T  20806042 tgtgaactatcaacttcataattaatgactttgccttgtcccaagattcgtgcttggggg 20805983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 201
Target Start/End: Original strand, 20194671 - 20194705
Alignment:
Q  167 cttcgccttgtctcaagactcgtgcttggggggct 201  Q
    |||||||||||| ||||||||||||||||||||||    
T  20194671 cttcgccttgtcccaagactcgtgcttggggggct 20194705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 201
Target Start/End: Complemental strand, 19454176 - 19454143
Alignment:
Q  168 ttcgccttgtctcaagactcgtgcttggggggct 201  Q
    ||||||||||| ||||||||||||||||||||||    
T  19454176 ttcgccttgtcccaagactcgtgcttggggggct 19454143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 137
Target Start/End: Original strand, 20194669 - 20194702
Alignment:
Q  104 cactttgccttgtcccaagactcgtgcttggggg 137  Q
    ||||| ||||||||||||||||||||||||||||    
T  20194669 cacttcgccttgtcccaagactcgtgcttggggg 20194702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 20806015 - 20805978
Alignment:
Q  105 actttgccttgtcccaagactcgtgcttgggggctgtg 142  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  20806015 actttgccttgtcccaagattcgtgcttgggggttgtg 20805978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 18620817 - 18620773
Alignment:
Q  157 taattaatcccttcgccttgtctcaagactcgtgcttggggggct 201  Q
    ||||||||| ||||||| |||| ||||||||||||||||| ||||    
T  18620817 taattaatcacttcgccatgtcccaagactcgtgcttgggaggct 18620773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 24277356 - 24277324
Alignment:
Q  110 gccttgtcccaagactcgtgcttgggggctgtg 142  Q
    ||||||| |||||||||||||||||||||||||    
T  24277356 gccttgtaccaagactcgtgcttgggggctgtg 24277324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 74601 - 74487
Alignment:
Q  22 acactaatgaactcgtcgaaggacatgtaaaatgcagatattgcccatactccaatatcaaaagagcaatgatataactaaccactttgccttgtcccaa 121  Q
    |||| |||||||||| | |||||||| |||||||||||||||||||||||||||||||||||| ||| |    |||| ||| ||||| ||||||||| ||    
T  74601 acaccaatgaactcgccaaaggacatataaaatgcagatattgcccatactccaatatcaaaatagcgacttcataattaatcacttcgccttgtcctaa 74502  T
Q  122 gactcgtgcttgggg 136  Q
    |||||| | ||||||    
T  74501 gactcgagtttgggg 74487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 202
Target Start/End: Complemental strand, 74222 - 74187
Alignment:
Q  167 cttcgccttgtctcaagactcgtgcttggggggctt 202  Q
    |||||||||||| |||||||||||||||||||||||    
T  74222 cttcgccttgtcccaagactcgtgcttggggggctt 74187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 74538 - 74487
Alignment:
Q  146 tagcgacttcataattaatcccttcgccttgtctcaagactcgtgcttgggg 197  Q
    |||||||||||||||||||| ||||||||||||  |||||||| | ||||||    
T  74538 tagcgacttcataattaatcacttcgccttgtcctaagactcgagtttgggg 74487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 137
Target Start/End: Complemental strand, 74224 - 74191
Alignment:
Q  104 cactttgccttgtcccaagactcgtgcttggggg 137  Q
    ||||| ||||||||||||||||||||||||||||    
T  74224 cacttcgccttgtcccaagactcgtgcttggggg 74191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 105 - 198
Target Start/End: Complemental strand, 124109 - 124016
Alignment:
Q  105 actttgccttgtcccaagactcgtgcttgggggctgt-gaactagcgacttcataattaatcccttcgccttgtctcaagactcgtgcttggggg 198  Q
    |||| ||||||| ||||||||||||| |||||||||| |||| | | ||||||||||||||| ||||||||| || |||||||||||||||||||    
T  124109 acttcgccttgttccaagactcgtgcgtgggggctgttgaac-atcaacttcataattaatcacttcgccttatcccaagactcgtgcttggggg 124016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 201
Target Start/End: Complemental strand, 26067566 - 26067469
Alignment:
Q  105 actttgccttgtcccaagactcgtgcttgggg-gctgtgaactagcgacttcataattaatcccttcgccttgtctcaagactcgtgcttggggggct 201  Q
    |||| |||| |||||||||||||||||||||| |||||| |||| || |||||||||| ||| ||| ||  |||| ||||||||||| ||||||||||    
T  26067566 acttcgcctagtcccaagactcgtgcttggggagctgtggactatcgccttcataatttatcactttgctatgtcccaagactcgtgattggggggct 26067469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 198
Target Start/End: Original strand, 21240325 - 21240413
Alignment:
Q  111 ccttgtcccaagactcgtgcttggggg-ctgtgaactagcgacttcataattaatcccttcgccttgtctcaagactcgtgcttggggg 198  Q
    ||||||||||| |||| |||||||||| ||||| |||| || |||||||||||||| || || |||||  ||||||||||| |||||||    
T  21240325 ccttgtcccaaaactcttgcttggggggctgtggactatcgccttcataattaatcactccgtcttgttccaagactcgtgtttggggg 21240413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 43177319 - 43177271
Alignment:
Q  94 tataactaaccactttgccttgtcccaagactcgtgcttgggggctgtg 142  Q
    ||||| ||| ||||| |||||||||||||||||||||||||||||||||    
T  43177319 tataattaatcacttcgccttgtcccaagactcgtgcttgggggctgtg 43177271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 43177318 - 43177276
Alignment:
Q  156 ataattaatcccttcgccttgtctcaagactcgtgcttggggg 198  Q
    |||||||||| |||||||||||| |||||||||||||||||||    
T  43177318 ataattaatcacttcgccttgtcccaagactcgtgcttggggg 43177276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 26067707 - 26067649
Alignment:
Q  22 acactaatgaactcgtcgaaggacatgtaaaatgcagatattgcccatactccaatatc 80  Q
    |||| |||||| |||||||||||||| |||| ||||||| | | |||||||||||||||    
T  26067707 acaccaatgaagtcgtcgaaggacatataaactgcagatgtagtccatactccaatatc 26067649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 26067580 - 26067535
Alignment:
Q  152 cttcataattaatcccttcgccttgtctcaagactcgtgcttgggg 197  Q
    |||||||||||||  |||||||| ||| ||||||||||||||||||    
T  26067580 cttcataattaattacttcgcctagtcccaagactcgtgcttgggg 26067535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 254063 - 253999
Alignment:
Q  73 ccaatatcaaaagagcaatgatataactaaccactttgccttgtcccaagactcgtgcttggggg 137  Q
    |||||||  ||||||||| | ||||| ||| ||||||||||||||||||| ||||||||||||||    
T  254063 ccaatattgaaagagcaacgttataattaatcactttgccttgtcccaagcctcgtgcttggggg 253999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 260669 - 260605
Alignment:
Q  73 ccaatatcaaaagagcaatgatataactaaccactttgccttgtcccaagactcgtgcttggggg 137  Q
    |||||||  ||||||||| | ||||| ||| ||||||||||||||||||| ||||||||||||||    
T  260669 ccaatattgaaagagcaacgttataattaatcactttgccttgtcccaagcctcgtgcttggggg 260605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 196
Target Start/End: Complemental strand, 15699604 - 15699561
Alignment:
Q  153 ttcataattaatcccttcgccttgtctcaagactcgtgcttggg 196  Q
    ||||||||||||| |||||||||||| |||||||||||||||||    
T  15699604 ttcataattaatcacttcgccttgtcccaagactcgtgcttggg 15699561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 35577098 - 35577134
Alignment:
Q  101 aaccactttgccttgtcccaagactcgtgcttggggg 137  Q
    |||||||| ||||||||||||||||||||||||||||    
T  35577098 aaccacttcgccttgtcccaagactcgtgcttggggg 35577134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 202
Target Start/End: Original strand, 35577103 - 35577138
Alignment:
Q  167 cttcgccttgtctcaagactcgtgcttggggggctt 202  Q
    |||||||||||| |||||||||||||||||||||||    
T  35577103 cttcgccttgtcccaagactcgtgcttggggggctt 35577138  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 16078097 - 16078055
Alignment:
Q  104 cactttgccttgtcccaagactcgtgctt-gggggctgtgaac 145  Q
    ||||| ||||||||||||||||||||||| |||||||||||||    
T  16078097 cacttcgccttgtcccaagactcgtgcttagggggctgtgaac 16078055  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 15699601 - 15699561
Alignment:
Q  95 ataactaaccactttgccttgtcccaagactcgtgcttggg 135  Q
    |||| ||| ||||| ||||||||||||||||||||||||||    
T  15699601 ataattaatcacttcgccttgtcccaagactcgtgcttggg 15699561  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 22191756 - 22191724
Alignment:
Q  110 gccttgtcccaagactcgtgcttgggggctgtg 142  Q
    |||||||||||||||| ||||||||||||||||    
T  22191756 gccttgtcccaagacttgtgcttgggggctgtg 22191724  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 10235485 - 10235526
Alignment:
Q  104 cactttgccttgtcccaagactcgtgcttgggggctgtgaac 145  Q
    ||||| |||||||||||||||||||| |||||||||||||||    
T  10235485 cacttcgccttgtcccaagactcgtggttgggggctgtgaac 10235526  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 52388713 - 52388678
Alignment:
Q  102 accactttgccttgtcccaagactcgtgcttggggg 137  Q
    ||||||| ||||||||||||||||||||||||||||    
T  52388713 accacttcgccttgtcccaagactcgtgcttggggg 52388678  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 22762731 - 22762773
Alignment:
Q  104 cactttgccttgtcccaagactcgtgctt-gggggctgtgaac 145  Q
    ||||| ||||||||||||||||||||||| |||||||||||||    
T  22762731 cacttcgccttgtcccaagactcgtgcttggggggctgtgaac 22762773  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 201
Target Start/End: Original strand, 22762733 - 22762767
Alignment:
Q  167 cttcgccttgtctcaagactcgtgcttggggggct 201  Q
    |||||||||||| ||||||||||||||||||||||    
T  22762733 cttcgccttgtcccaagactcgtgcttggggggct 22762767  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 201
Target Start/End: Complemental strand, 52388709 - 52388675
Alignment:
Q  167 cttcgccttgtctcaagactcgtgcttggggggct 201  Q
    |||||||||||| ||||||||||||||||||||||    
T  52388709 cttcgccttgtcccaagactcgtgcttggggggct 52388675  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 120907 - 120964
Alignment:
Q  141 tgaactagcgacttcataattaatcccttcgccttgtctcaagactcgtgcttggggg 198  Q
    ||||||| | |||||| |||||||| |||||  ||||| |||||||||||||||||||    
T  120907 tgaactatcaacttcaaaattaatcacttcgttttgtcccaagactcgtgcttggggg 120964  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 23107330 - 23107362
Alignment:
Q  104 cactttgccttgtcccaagactcgtgcttgggg 136  Q
    |||||||| ||||||||||||||||||||||||    
T  23107330 cactttgcattgtcccaagactcgtgcttgggg 23107362  T

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