View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21269_low_34 (Length: 238)
Name: NF21269_low_34
Description: NF21269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21269_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 40012526 - 40012413
Alignment:
| Q |
1 |
ttaggttagccgatgaaaatgcatgtatatgttggatgtgcaattgcccatcaaacatgttttggagttcaatttcaagagtagctctagctctaaaaga |
100 |
Q |
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| T |
40012526 |
ttaggttagccgatgaaaatgcatgtatatgttggatgtgcaattgcccatcaaacatgttttggagttcaatttcaagagtagctctagctctaaaaga |
40012427 |
T |
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| Q |
101 |
tggctatataatta |
114 |
Q |
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|||||||||||||| |
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| T |
40012426 |
tggctatataatta |
40012413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 114 - 222
Target Start/End: Original strand, 21522303 - 21522411
Alignment:
| Q |
114 |
agagcagtgctatttgacacgatgctcttttcccacgaatttgtacgactatcataaactacacctaatttgctcnnnnnnnaggtttgcataactgtca |
213 |
Q |
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| T |
21522303 |
agagcggtgctatttggcacgacgctctttccccacgaatttgtacgaccagcacaaactacacctaatttgctctttttttaggtttgcataactgtca |
21522402 |
T |
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| Q |
214 |
gcataaata |
222 |
Q |
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| T |
21522403 |
gcataaata |
21522411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 1877376 - 1877467
Alignment:
| Q |
131 |
cacgatgctcttttcccacgaatttgtacgactatcataaactacacctaatttgctcnnnnnnnaggtttgcataactgtcagcataaata |
222 |
Q |
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| T |
1877376 |
cacgacgctctttccccacgaatttgtacgaccagcacaaactacacccaatttgctctttttttaggcttgcataactgtcagcataaata |
1877467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 27100523 - 27100588
Alignment:
| Q |
120 |
gtgctatttgacacgatgctcttttcccacgaatttgtacgactatcataaactacacctaatttg |
185 |
Q |
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| T |
27100523 |
gtgctatttagcacgacgctctttccccacgaatttatacgaccagcacaaactacacccaatttg |
27100588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 27177780 - 27177715
Alignment:
| Q |
120 |
gtgctatttgacacgatgctcttttcccacgaatttgtacgactatcataaactacacctaatttg |
185 |
Q |
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| T |
27177780 |
gtgctatttagcacgacgctctttccccacgaatttatacgaccagcacaaactacacccaatttg |
27177715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 32827078 - 32827151
Alignment:
| Q |
115 |
gagcagtgctatttgacacgatgctcttttcccacgaatttgtacgactatcataaactacacctaatttgctc |
188 |
Q |
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|||| |||||||||||||||| ||||||| |||| |||||||| |||| | || |||||||||| ||||||||| |
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| T |
32827078 |
gagcggtgctatttgacacgacgctctttccccatgaatttgtccgaccagcacaaactacacccaatttgctc |
32827151 |
T |
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