View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21269_low_39 (Length: 211)

Name: NF21269_low_39
Description: NF21269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21269_low_39
NF21269_low_39
[»] chr1 (3 HSPs)
chr1 (16-110)||(2373900-2373994)
chr1 (16-110)||(2382077-2382171)
chr1 (16-110)||(2839355-2839449)
[»] chr3 (1 HSPs)
chr3 (56-85)||(1525868-1525897)


Alignment Details
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 2373900 - 2373994
Alignment:
Q  16 caaagaaagccgaggaggcagaggcaaaggcaaaggattaatgaatatttcaagaattagagaaggactagatttgcactattatgtttttcatg 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2373900 caaagaaagccgaggaggcagaggcaaaggcaaaggattaatgaatatttcaagaattagagaaggactagatttgcactattatgtttttcatg 2373994  T

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Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 2382171 - 2382077
Alignment:
Q  16 caaagaaagccgaggaggcagaggcaaaggcaaaggattaatgaatatttcaagaattagagaaggactagatttgcactattatgtttttcatg 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2382171 caaagaaagccgaggaggcagaggcaaaggcaaaggattaatgaatatttcaagaattagagaaggactagatttgcactattatgtttttcatg 2382077  T

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Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 2839449 - 2839355
Alignment:
Q  16 caaagaaagccgaggaggcagaggcaaaggcaaaggattaatgaatatttcaagaattagagaaggactagatttgcactattatgtttttcatg 110  Q
    |||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2839449 caaagaaagccgaggaggcgaaggcaaaggcaaaggagtaatgaatatttcaagaattagagaaggactagatttgcactattatgtttttcatg 2839355  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 85
Target Start/End: Complemental strand, 1525897 - 1525868
Alignment:
Q  56 atgaatatttcaagaattagagaaggacta 85  Q
    ||||||||||||||||||||||||||||||    
T  1525897 atgaatatttcaagaattagagaaggacta 1525868  T

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