View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21269_low_9 (Length: 462)
Name: NF21269_low_9
Description: NF21269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21269_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 16 - 459
Target Start/End: Complemental strand, 37602324 - 37601881
Alignment:
| Q |
16 |
cagcatattccatcactattgctaaatgagttggagtcaacaacacctgcaatgaatgaacatctcatatgtacaactatgaattggcataaatttaaaa |
115 |
Q |
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| T |
37602324 |
cagcatattccatcactattgctaaatgagttggagtcaacaacacctgcaatgaatgaacatatcatatgtacaactatgaattggcataaatttaaaa |
37602225 |
T |
|
| Q |
116 |
gttttccaaagatttttggaattcctttcaaggagaaagtaaaaataaaatgatatgcaatagtaaaaaacagaatcatgttcataatgaagcagcaaaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37602224 |
gttttccaaagatttttggaattcctttcaaggagaaagtaaaaataaaatgatatgcaatagtaaaaaacagaatcatgttcatgatgaagcagcaaaa |
37602125 |
T |
|
| Q |
216 |
gacgctgtatatacagcactcattacatttatacttttataaagttggtatgaagtagcaaaagaaagcactagttcaataacnnnnnnnnnnggcaagc |
315 |
Q |
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| T |
37602124 |
gacgctgtatatacagcactcattacatttatacttttataaagttggtatgaagtagcaaaagaaagcactagttcaataacaaaaaaaaaaagcaagc |
37602025 |
T |
|
| Q |
316 |
atgagctcaaagaaaataacaccagataaattcttataagaaataggatgcataataatgacactattaaaacctctaagtacctctttaaatctaacaa |
415 |
Q |
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| T |
37602024 |
atgagctcaaagaaaataacaccaggtaaattcttataagaaataggatgcataataatgacactattaaaacctctaagtacctctttaaatctaacaa |
37601925 |
T |
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| Q |
416 |
tattgggatgcttcaatgacctatgatttataatctccctttgc |
459 |
Q |
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| T |
37601924 |
tattgggatgcttcaatgacctatgatttataatctccctttgc |
37601881 |
T |
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Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 396 - 458
Target Start/End: Complemental strand, 39410729 - 39410667
Alignment:
| Q |
396 |
tacctctttaaatctaacaatattgggatgcttcaatgacctatgatttataatctccctttg |
458 |
Q |
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| T |
39410729 |
tacctctttaaatctaatgatattgggatgcttcaaggacctatgatttataatctccctttg |
39410667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 44633062 - 44633111
Alignment:
| Q |
18 |
gcatattccatcactattgctaaatgagttggagtcaacaacacctgcaa |
67 |
Q |
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| T |
44633062 |
gcatactccatcacaattgctaaatgtgttggagtcaaaaccacctgcaa |
44633111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 458
Target Start/End: Complemental strand, 12309331 - 12309285
Alignment:
| Q |
412 |
acaatattgggatgcttcaatgacctatgatttataatctccctttg |
458 |
Q |
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| T |
12309331 |
acaatattgggatgcctcagtgatctatgatttataatttccctttg |
12309285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 458
Target Start/End: Original strand, 27107715 - 27107776
Alignment:
| Q |
397 |
acctctttaaatctaacaatattgggatgcttcaatgacctatgatttataatctccctttg |
458 |
Q |
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|||||||| || ||||||||||| |||||||||||||| ||||| || || || |||||||| |
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| T |
27107715 |
acctctttgaacctaacaatattaggatgcttcaatgatctatggttcatgatttccctttg |
27107776 |
T |
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