View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2126_high_1 (Length: 674)
Name: NF2126_high_1
Description: NF2126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2126_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 26634127 - 26633660
Alignment:
| Q |
1 |
cttccaccatatcctcctccatcgtttccaccatatccactccttccaccgtaacctccaccatcgttacctccatatcctcttccaccaccatttccgc |
100 |
Q |
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| T |
26634127 |
cttccaccatatcctccgccatcgtttccaccatatccactccttccaccgtaacctccaccatcgttacctccatatcctctaccaccaccgtttccgc |
26634028 |
T |
|
| Q |
101 |
ttcctttcgctgcgtaaccaccaccgctttcattcccagcatatccaccagcatagccaccacctcctccgcctccgtaaccaccactagcaccatagga |
200 |
Q |
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| T |
26634027 |
ttcctttcgctgcgtaaccaccaccgctttcattcccagcatatccaccagcatagccaccacctcctccgcctccgtaaccaccactagcaccatagga |
26633928 |
T |
|
| Q |
201 |
aggtggcgcagagccacctccggcatcgtgaccgtaccctccagacatgattcgatctagggttcgctactaccacaagagagaaactgagannnnnnng |
300 |
Q |
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| T |
26633927 |
aggtggcgcagagccacctccggcatcgtgaccgtaccctccagacatgattcgatctagggttcgctactaccacaagagagaaactgagatttttttg |
26633828 |
T |
|
| Q |
301 |
tgtagtgaagcttctgaaa---tattgtagaatgtaactgtgaaatattgggcctttccgttttaacaaaggaagaaacttttcgcacccttgttatttc |
397 |
Q |
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| T |
26633827 |
tgtagtgaagcttctgaaatattattgtagaatgtaactgtgaaatattgggcctttccgttttaacaaaggaagaaactttttgcacccttgttatttc |
26633728 |
T |
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| Q |
398 |
tattacaccctcctaaattattattctacactttgtacttttgtttcttgacttacactttgtattta |
465 |
Q |
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| T |
26633727 |
tattacaccctcctaaattattattctacactttgtatttttgtttcttgacttacactttgtattta |
26633660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 457 - 647
Target Start/End: Complemental strand, 26633360 - 26633171
Alignment:
| Q |
457 |
ttgtatttattatgataatagaaataccacaatggttaactaggttaattttgttaatattttttgattttattatttataacttcatacaagaaaatgt |
556 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
26633360 |
ttgtatttattatgataatagaaataccacaatcgttaactaggttaattttgtaaatatttttt-attttattatttataacttcatacaagaaaatgg |
26633262 |
T |
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| Q |
557 |
gttcgttattgtgagaaggttggagtaactttttcctaggtttgccaatggcacgagatttttcatgttgtgtacttgtgacatcagctag |
647 |
Q |
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| T |
26633261 |
gttcgttattgtgagaaggttggagtaactttttcctaggtttgccaatggcacgagatttttcatgttgtgcacttgtggcatcagctag |
26633171 |
T |
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