View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2126_high_10 (Length: 353)

Name: NF2126_high_10
Description: NF2126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2126_high_10
NF2126_high_10
[»] chr6 (5 HSPs)
chr6 (42-353)||(8814220-8814529)
chr6 (42-335)||(7078161-7078456)
chr6 (124-193)||(26360897-26360966)
chr6 (41-96)||(7078719-7078774)
chr6 (41-96)||(8813902-8813957)
[»] chr1 (2 HSPs)
chr1 (123-246)||(21968572-21968695)
chr1 (68-105)||(31847318-31847355)
[»] chr7 (3 HSPs)
chr7 (130-286)||(42319274-42319429)
chr7 (153-206)||(41719494-41719547)
chr7 (61-105)||(5241047-5241091)
[»] chr3 (3 HSPs)
chr3 (40-104)||(2470828-2470892)
chr3 (47-107)||(25158250-25158311)
chr3 (59-104)||(9194355-9194400)
[»] chr8 (1 HSPs)
chr8 (69-99)||(24191000-24191030)
[»] chr4 (1 HSPs)
chr4 (69-105)||(46823233-46823269)
[»] chr2 (1 HSPs)
chr2 (71-107)||(36208229-36208265)


Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 42 - 353
Target Start/End: Original strand, 8814220 - 8814529
Alignment:
Q  42 ttggagttatttttggtagtttatgtaggaatgagcaattttgattgggagaagagcaattttccttcnnnnnnna-----ggtcgaaaagaggatattt 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||    
T  8814220 ttggagttatttttggtagtttatgtaggaatgagcaattttgattgggagaagagcaattttccttctatttttttttttggtcgaaaagaggatattt 8814319  T
Q  137 cattcaatgatagcataaaagctagtaattacaccatgtgtagaaaactacccactatttgggtaaagtacatagttactgcaaaatctaacaaatacat 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  8814320 cattcaatgatagcataaaagctagtaattacaccatgtgtagaaaactacccactattggggtaaagtacagagttactgcaaaatctaacaaatacat 8814419  T
Q  237 ctcttaagcacatgatttgctcctgacttattcatctaacatatcatggttacaaagccttcgctaagaatgaatatccaccagagggcagcaaagaccc 336  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  8814420 ctcttaagcacatgatttgctcctgacttatacatctaacatatcatggttacaaagccttcgctaag-------atccaccagagggcagcaaagaccc 8814512  T
Q  337 agcacagtaccacatcc 353  Q
    |||||||||||||||||    
T  8814513 agcacagtaccacatcc 8814529  T

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Target: chr6; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 42 - 335
Target Start/End: Complemental strand, 7078456 - 7078161
Alignment:
Q  42 ttggagttatttttggtagtttatgtaggaatgagcaattttgattgggagaagagcaattttccttcnnnnnnna--ggtcgaaaagaggatatttcat 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||| ||||||||||    
T  7078456 ttggagttatttttggtagtttatgtaggaatgagcaattttgattgggagaagagcaattttccttcttttttttttggtcgaaaagatgatatttcat 7078357  T
Q  140 tcaatgatagcataaaagctagtaattacaccatgtgtagaaaactacccactatttgggtaaagtacatagttactgcaaaatctaacaaatacatctc 239  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  7078356 tcaatgatagcataaaagctagtgattacaccatgtgtagaaaactacccactattggggtaaagtacagagttactgcaaaatctaacaaatacatctc 7078257  T
Q  240 ttaagcacatgatttgctcctgacttattcatctaacatatcatggttacaaagccttcgctaagaatgaatatccaccagagggcagcaaagacc 335  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  7078256 ttaagcacatgatttgctcctgacttatacatctaacatatcatggttacaaagccttcactaagaatgaatatccaccagagggcatcaaagacc 7078161  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 124 - 193
Target Start/End: Complemental strand, 26360966 - 26360897
Alignment:
Q  124 aaagaggatatttcattcaatgatagcataaaagctagtaattacaccatgtgtag-aaaactacccacta 193  Q
    |||| |||||||||||||||||||||| ||||||||||  |||||| ||||||||| ||||||||||||||    
T  26360966 aaagtggatatttcattcaatgatagcttaaaagctagagattaca-catgtgtagaaaaactacccacta 26360897  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 96
Target Start/End: Original strand, 7078719 - 7078774
Alignment:
Q  41 gttggagttatttttggtagtttatgtaggaatgagcaattttgattgggagaaga 96  Q
    |||| ||||||||||| | ||||| || |||||||| |||||||||||||||||||    
T  7078719 gttgaagttatttttgatggtttaggtgggaatgagtaattttgattgggagaaga 7078774  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 96
Target Start/End: Complemental strand, 8813957 - 8813902
Alignment:
Q  41 gttggagttatttttggtagtttatgtaggaatgagcaattttgattgggagaaga 96  Q
    |||| ||||||||||| | ||||| || |||||||| |||||||||||||||||||    
T  8813957 gttgaagttatttttgatggtttaggtgggaatgagtaattttgattgggagaaga 8813902  T

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Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 123 - 246
Target Start/End: Complemental strand, 21968695 - 21968572
Alignment:
Q  123 aaaagaggatatttcattcaatgatagcataaaagctagtaattacaccatgtgtagaaaactacccactatttgggtaaagtacatagttactgcaaaa 222  Q
    |||||||||||||||||| ||||||||  ||||||||| | |||||||||||||||||||||||  ||||||| || |||| |||||| ||| |||| ||    
T  21968695 aaaagaggatatttcatttaatgatagtttaaaagctaatgattacaccatgtgtagaaaactattcactattgggataaaatacataattagtgcagaa 21968596  T
Q  223 tctaacaaatacatctcttaagca 246  Q
    ||||||||||||||||||||||||    
T  21968595 tctaacaaatacatctcttaagca 21968572  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 105
Target Start/End: Complemental strand, 31847355 - 31847318
Alignment:
Q  68 aggaatgagcaattttgattgggagaagagcaattttc 105  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  31847355 aggaatgagcaattttgaaagggagaagagcaattttc 31847318  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 286
Target Start/End: Original strand, 42319274 - 42319429
Alignment:
Q  130 gatatttcattcaatgatagcataaaagctagtaattacaccatgtgtagaaaactacccactatttgggtaaagtacatagttactgcaaaatctaaca 229  Q
    ||||||||||||| |||||||  || ||||||| |||||||  ||| ||||||| | | ||||||| |||| |||||||   | ||||||||||| ||||    
T  42319274 gatatttcattcattgatagctaaatagctagtgattacactgtgtatagaaaagtgctcactattggggtcaagtacagcatcactgcaaaatccaaca 42319373  T
Q  230 aatacatctcttaagcacatgatttgctcctgacttattcatctaacatatcatggt 286  Q
    ||||||||  |||| ||   || ||||||||||||||| ||||||||| ||||||||    
T  42319374 aatacatc-attaaacaatagacttgctcctgacttatgcatctaacaaatcatggt 42319429  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 41719494 - 41719547
Alignment:
Q  153 aaaagctagtaattacaccatgtgtagaaaactacccactatttgggtaaagta 206  Q
    |||||||||| |||||| ||||| |||||| |||||||||||  ||||||||||    
T  41719494 aaaagctagtgattacatcatgtatagaaacctacccactatcagggtaaagta 41719547  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 5241091 - 5241047
Alignment:
Q  61 tttatgtaggaatgagcaattttgattgggagaagagcaattttc 105  Q
    ||||||| ||||||| |||||||| ||| ||||||||||||||||    
T  5241091 tttatgtgggaatgaacaattttgtttgtgagaagagcaattttc 5241047  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 2470828 - 2470892
Alignment:
Q  40 tgttggagttatttttggtagtttatgtaggaatgagcaattttgattgggagaagagcaatttt 104  Q
    |||||| | |||||| ||||| |||||| ||||||||||||||||||| ||||||||||||||||    
T  2470828 tgttgggggtattttcggtagcttatgtgggaatgagcaattttgatttggagaagagcaatttt 2470892  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 25158250 - 25158311
Alignment:
Q  47 gttatttttggtagtttatg-taggaatgagcaattttgattgggagaagagcaattttcct 107  Q
    ||||||||||||||||| || | ||||||||| | |||||||||||||||| ||||||||||    
T  25158250 gttatttttggtagtttctggtgggaatgagctaatttgattgggagaagaacaattttcct 25158311  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 9194355 - 9194400
Alignment:
Q  59 agtttatgtaggaatgagcaattttgattgggagaagagcaatttt 104  Q
    |||| |||| ||| ||||||||||||| ||||||||||||||||||    
T  9194355 agttcatgtgggagtgagcaattttgaatgggagaagagcaatttt 9194400  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 99
Target Start/End: Original strand, 24191000 - 24191030
Alignment:
Q  69 ggaatgagcaattttgattgggagaagagca 99  Q
    |||||||||||||||||||||||||||||||    
T  24191000 ggaatgagcaattttgattgggagaagagca 24191030  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 46823269 - 46823233
Alignment:
Q  69 ggaatgagcaattttgattgggagaagagcaattttc 105  Q
    |||||||| |||||||| |||||||||||||||||||    
T  46823269 ggaatgaggaattttgaatgggagaagagcaattttc 46823233  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 107
Target Start/End: Complemental strand, 36208265 - 36208229
Alignment:
Q  71 aatgagcaattttgattgggagaagagcaattttcct 107  Q
    ||||||||||||||  |||||||||||||||||||||    
T  36208265 aatgagcaattttgcatgggagaagagcaattttcct 36208229  T

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