View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2126_high_13 (Length: 325)
Name: NF2126_high_13
Description: NF2126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2126_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 40840131 - 40839851
Alignment:
| Q |
1 |
cactttaggtaacttctaaagaacaatacagagcaaattcataattatttgtaacgcaacatttttagcaaatgtcattgtgaaggttctaaaattctta |
100 |
Q |
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| T |
40840131 |
cactttaagtaacttctaaagaacaatacagagcaaattcataattatttgtaacgcaacatttttagcaaatgtcattgtgaaggttctaaaattctta |
40840032 |
T |
|
| Q |
101 |
ccctgtcaaagaagtataagacaatctcttatgataaaagagaaacaac---------aaaacatagcatgattggctttaatggtacggtaacaaacac |
191 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
40840031 |
ccctctcaaagaagtataagacaatctcttatgataaaagagaaacaacaaaagcaacaaaacatagcatgattggctttaat-gtacggtaacaaacac |
40839933 |
T |
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| Q |
192 |
tttagtatccaaccagaacaaaagacttaactataatctatattgttctctatatataacaacatattacttgccataaataacc |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40839932 |
tttagtatccaaccagaacaaaagacttaactataatctatattgttctctatatat---aacatattacttgccataaataacc |
40839851 |
T |
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