View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2126_high_5 (Length: 415)
Name: NF2126_high_5
Description: NF2126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2126_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 7 - 398
Target Start/End: Original strand, 29006624 - 29007013
Alignment:
| Q |
7 |
aaaaatcataaaaattgacgacaatagggatgacaatagcacaatagcataaacaaattataaaaattgaccacaaaaccaatcaacttaatcctacgca |
106 |
Q |
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| T |
29006624 |
aaaaatcataaaaattgacgacaatagggatgacaatagcacaatagcataaacaaattataaaaattgaccacaaaaccaatcaacttaatcctatgca |
29006723 |
T |
|
| Q |
107 |
ttctagactgagtcgtgatgatagtagttgattattatgaagtcaatggaagttattggcggcaaagttattgaattagcagcaatcaggtgcgtaatgc |
206 |
Q |
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| T |
29006724 |
ttctagactgagtcgtgatgatagt---tgattattatgaagtcaatggaagttattggcggcaaagttattgaattagcagcaatcaggtgcgtaatgc |
29006820 |
T |
|
| Q |
207 |
acacgtatcttagactagactcccgaacccaccaaccaatcgtgtgtggccacgtcaagtcttccactcttccttcaaactaacaacattttgaaataaa |
306 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
29006821 |
acacgtatcttagactagactccccaacccaccaaccaatcgcgtgtggccacgtcaagtcttccattcttccttcaaa-taacaacattttgaaataaa |
29006919 |
T |
|
| Q |
307 |
ggacttcttcaacttccattttctttcatttctcatcctctctctc--tcactccaatgtctgcgtccaatactagaatttctcttgcactttt |
398 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29006920 |
ggacttcttcaacttccattttctttcatttctcaacctctctctctatccctccaatgtctgcgtccaatactagaatttctcttgcactttt |
29007013 |
T |
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