View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2126_high_7 (Length: 400)
Name: NF2126_high_7
Description: NF2126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2126_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 17 - 396
Target Start/End: Original strand, 5391000 - 5391382
Alignment:
| Q |
17 |
gtttccacctgaaaacatcgccattgctgcagttgaatgcttcattctttgcattaggatccactgcaccccaaatatgttgttcggatattaaattagc |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5391000 |
gtttccacctgaaaacatcgccattgctgcagttgaatgcttcattctttgcattaggatccactgcaccccaaatatgttgttcggatattaaattagc |
5391099 |
T |
|
| Q |
117 |
atctgaagctgttgaataacattcccatgcagcttttgagccaggaaaccttaatggaagaccctcatgcttgcaaattgcagcgtaaacacaaagcgtg |
216 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5391100 |
atctgaagctgttgaataacattcccatgcaccttttgagccaggaaaccttaatggaagaccctcatgcttgcaaattgcagcgtaaacacaaagcgtg |
5391199 |
T |
|
| Q |
217 |
ccaatgaggttcatcatgctgtaaggtgaaaatccaaagataacttgtggtcgattaatgaaccatgtcattccttttttcttacccacctgaataaaaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5391200 |
ccaatgaggttcatcatgctgtaaggtgaaaatccaaagataacttgtggtcgattaatgaaccatgtcattccttttttcttacccacctgaataaaaa |
5391299 |
T |
|
| Q |
317 |
tatagttcatctaattatataa---tagtgtatgttgtgacgtattttattgacaataatttgtttgtttagtataatctacc |
396 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
5391300 |
tatagttcatctaattatataatagtagtgtatgttgtgacgtattttattgacaataatttgtttgtttagtttaatttacc |
5391382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 17 - 315
Target Start/End: Original strand, 5399719 - 5400017
Alignment:
| Q |
17 |
gtttccacctgaaaacatcgccattgctgcagttgaatgcttcattctttgcattaggatccactgcaccccaaatatgttgttcggatattaaattagc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5399719 |
gtttccacctgaaaacatcgccattgctgcagttgaatgcttcattctttgcattaggatccactgcaccccaaatatgttgttcggatattaaattagc |
5399818 |
T |
|
| Q |
117 |
atctgaagctgttgaataacattcccatgcagcttttgagccaggaaaccttaatggaagaccctcatgcttgcaaattgcagcgtaaacacaaagcgtg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5399819 |
atctgaagctgttgaataacattcccatgcaccttttgagccaggaaaccttaatggaagaccctcatgcttgcaaattgcagcgtaaacacaaagcgtg |
5399918 |
T |
|
| Q |
217 |
ccaatgaggttcatcatgctgtaaggtgaaaatccaaagataacttgtggtcgattaatgaaccatgtcattccttttttcttacccacctgaataaaa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5399919 |
ccaatgaggttcatcatgctgtaaggtgaaaatccaaagataacttgtggtcgattaatgaaccatgtcgttccttttttcttacccacctgaataaaa |
5400017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 348
Target Start/End: Original strand, 5394538 - 5394869
Alignment:
| Q |
17 |
gtttccacctgaaaacatcgccattgctgcagttgaatgcttcattctttgcattaggatccactgcaccccaaatatgttgttcggatattaaattagc |
116 |
Q |
| |
|
|||||||| |||||||||| ||||| ||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||| |
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|
| T |
5394538 |
gtttccacttgaaaacatcaccattactgcaattgaatgcttcattctttgcgttaggatccgctgcaccccaaatatgttgttcggctattaaattagc |
5394637 |
T |
|
| Q |
117 |
atctgaagctgttgaataacattcccatgcagcttttgagccaggaaaccttaatggaagaccctcatgcttgcaaattgcagcgtaaacacaaagcgtg |
216 |
Q |
| |
|
||||||||| || |||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5394638 |
atctgaagcagtagaataacactcccatgcaccttttgagccaggaaaccttaaaggaagaccctcatgcttgcaaattgcggcgtaaacacaaagcgtg |
5394737 |
T |
|
| Q |
217 |
ccaatgaggttcatcatgctgtaaggtgaaaatccaaagataacttgtggtcgattaatgaaccatgtcattccttttttcttacccacctgaataaaaa |
316 |
Q |
| |
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||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||| | |
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| T |
5394738 |
ccaatgacgttcatcatgctataaggtgaaaatccaaagatggggtgtggtcgattaatgaaccatgtcgttccttttttcttacccacctgaacaaata |
5394837 |
T |
|
| Q |
317 |
tatagttcatctaattatataatagtgtatgt |
348 |
Q |
| |
|
||| |||||| ||||||||||||| ||||||| |
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|
| T |
5394838 |
tattgttcatttaattatataataatgtatgt |
5394869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 3818865 - 3819103
Alignment:
| Q |
19 |
ttccacctgaaaacatcgccattgctgcagttgaatgcttcattctttgcattaggatccactgcaccccaaatatgttgttcggatattaaattagcat |
118 |
Q |
| |
|
|||||||| |||||||| ||||| || || ||||||||||||||||| |||| ||||||||||||| |||||||||||||||| | || |||| |||| |
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| T |
3818865 |
ttccacctaaaaacatcaccattactacaattgaatgcttcattcttagcataaggatccactgcagcccaaatatgttgttcagcaatcaaatctgcat |
3818964 |
T |
|
| Q |
119 |
ctgaagctgttgaataacattcccatgcagcttttgagccaggaaaccttaatggaagaccctcatgcttgcaaattgcagcgtaaacacaaagcgtgcc |
218 |
Q |
| |
|
| ||||| | | ||| ||||| || || | || ||||| || || |||| |||||||||||| |||||||||||||||||||||| || || |
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| T |
3818965 |
cagaagccatgtagtaattctcccaagctaacttagtccctggaaatctcaacggaacaccctcatgcttacaaattgcagcgtaaacacaaatagttcc |
3819064 |
T |
|
| Q |
219 |
aatgaggttcatcatgctgtaaggtgaaaatccaaagat |
257 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||| |
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| T |
3819065 |
aatgatattcatcatactgtaaggtgaaaatccaaagat |
3819103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 47339012 - 47338774
Alignment:
| Q |
19 |
ttccacctgaaaacatcgccattgctgcagttgaatgcttcattctttgcattaggatccactgcaccccaaatatgttgttcggatattaaattagcat |
118 |
Q |
| |
|
|||||||| |||||||| ||||| || || ||||||||||||||||| |||| ||||||||||||| ||||||||||||| || | || |||| ||||| |
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| T |
47339012 |
ttccacctaaaaacatcaccattactacaattgaatgcttcattcttagcataaggatccactgcagcccaaatatgttgctcagcaatcaaatcagcat |
47338913 |
T |
|
| Q |
119 |
ctgaagctgttgaataacattcccatgcagcttttgagccaggaaaccttaatggaagaccctcatgcttgcaaattgcagcgtaaacacaaagcgtgcc |
218 |
Q |
| |
|
| ||||| | | ||| ||||| || || | || ||||| || || |||| |||||||||||| |||||||||||||||||||||| || || |
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|
| T |
47338912 |
cagaagccatgtagtaattctcccaagctaacttagtccctggaaatctcaacggaacaccctcatgcttacaaattgcagcgtaaacacaaatagttcc |
47338813 |
T |
|
| Q |
219 |
aatgaggttcatcatgctgtaaggtgaaaatccaaagat |
257 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||| |
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|
| T |
47338812 |
aatgatattcatcatactgtaaggtgaaaatccaaagat |
47338774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 17 - 268
Target Start/End: Complemental strand, 47347484 - 47347233
Alignment:
| Q |
17 |
gtttccacctgaaaacatcgccattgctgcagttgaatgcttcattctttgcattaggatccactgcaccccaaatatgttgttcggatattaaattagc |
116 |
Q |
| |
|
||||||| || |||||||| |||||||| ||||| || ||||| ||||| |||| |||||||||||| ||||||||||||| || | || |||| || |
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|
| T |
47347484 |
gtttccatctaaaaacatcaccattgctacagttaaaagcttcgttcttagcataaggatccactgcggcccaaatatgttgctctgcaatcaaatccgc |
47347385 |
T |
|
| Q |
117 |
atctgaagctgttgaataacattcccatgcagcttttgagccaggaaaccttaatggaagaccctcatgcttgcaaattgcagcgtaaacacaaagcgtg |
216 |
Q |
| |
|
||| ||||| |||||| | ||||| || | |||| || ||||| | || |||| ||| || ||||||||||||||||| ||||||||||| || |
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|
| T |
47347384 |
atcagaagccacagaataagactcccaagctccctttgtaccgggaaatttcaacggaacaccttcgtgcttgcaaattgcagcataaacacaaagtgta |
47347285 |
T |
|
| Q |
217 |
ccaatgaggttcatcatgctgtaaggtgaaaatccaaagataacttgtggtc |
268 |
Q |
| |
|
|||| ||| ||||||| || ||||||||||||||||| |||||||| |||| |
|
|
| T |
47347284 |
ccaacgagattcatcaaactataaggtgaaaatccaaatataacttgaggtc |
47347233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 47350023 - 47349942
Alignment:
| Q |
17 |
gtttccacctgaaaacatcgccattgctgcagttgaatgcttcattctttgcattaggatccactgcaccccaaatatgttg |
98 |
Q |
| |
|
|||||||||| |||||||| |||||||| || ||||| ||||||||||| |||| || |||||||||| ||||||| ||||| |
|
|
| T |
47350023 |
gtttccacctaaaaacatcaccattgctacaattgaacgcttcattcttagcataagtatccactgcagcccaaatgtgttg |
47349942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 181 - 257
Target Start/End: Complemental strand, 47349859 - 47349783
Alignment:
| Q |
181 |
tcatgcttgcaaattgcagcgtaaacacaaagcgtgccaatgaggttcatcatgctgtaaggtgaaaatccaaagat |
257 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| | ||||||| ||||||||||| ||||||||||| |
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|
| T |
47349859 |
tcatgcttgcaaattgcagcgtaaaggcaaagcgtgccaacaacattcatcaaactgtaaggtgagaatccaaagat |
47349783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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