View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2126_high_9 (Length: 361)
Name: NF2126_high_9
Description: NF2126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2126_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 45635818 - 45635477
Alignment:
| Q |
1 |
accgtttcgacacacatcgtcatccactgaacccattgataattaaatcccatcctaaccatcacacctttcagataatcccaatcaatgcgatcgtaag |
100 |
Q |
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|||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
45635818 |
accgtttcgacacatatcgtcatccactgaacccgttgagaattaaatcccatcctaaccattacacctttcagataatcccaatcaatgcgatcgtaag |
45635719 |
T |
|
| Q |
101 |
ctttacttatatcaagtttcaaggccacactaccatcggcaattctcgtattagaattcatggaatgaataacttcgattgcaaccaaagcattatctag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
45635718 |
ctttacttatatcaagtttcaaggccacactaccatcgacaattctcgtattagtattcatggaattaataacttcgattgcaaccaaagcattatctag |
45635619 |
T |
|
| Q |
201 |
aattgacctgcccgnnnnnnnngttgactaactgtcagatatgcatttaggaagaacaacttgcagacggttggcgaggactgttgaaatcaatttataa |
300 |
Q |
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|||||||||||||| | | ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
45635618 |
aattgacctgcccgaaacaaaagctaactgactgtcaaatatgcatttaggaagaacaacttgcagacggttggcgaggacttttgaaatcaatttataa |
45635519 |
T |
|
| Q |
301 |
agaacattgcaaagagatatgggtctccaatcacgcattgtt |
342 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45635518 |
agaacattgcagagagatatgggtctccaatcacgcattgtt |
45635477 |
T |
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