View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2126_low_1 (Length: 697)

Name: NF2126_low_1
Description: NF2126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2126_low_1
NF2126_low_1
[»] chr6 (10 HSPs)
chr6 (1-680)||(6200387-6201063)
chr6 (93-208)||(18076116-18076231)
chr6 (94-216)||(6538438-6538555)
chr6 (155-216)||(6536597-6536658)
chr6 (118-202)||(8147647-8147731)
chr6 (155-213)||(6909902-6909960)
chr6 (100-170)||(30536405-30536475)
chr6 (100-206)||(31623487-31623593)
chr6 (155-216)||(8201215-8201276)
chr6 (492-524)||(6194546-6194578)
[»] chr4 (22 HSPs)
chr4 (96-263)||(54069398-54069564)
chr4 (94-216)||(50681116-50681238)
chr4 (105-216)||(9760372-9760483)
chr4 (155-214)||(53294143-53294202)
chr4 (96-221)||(33586977-33587101)
chr4 (94-272)||(15173275-15173449)
chr4 (160-272)||(21731628-21731739)
chr4 (100-204)||(31076425-31076529)
chr4 (96-190)||(42404051-42404145)
chr4 (115-216)||(3155545-3155646)
chr4 (155-264)||(7839341-7839449)
chr4 (142-226)||(46588090-46588175)
chr4 (96-216)||(54425968-54426086)
chr4 (136-216)||(39691170-39691250)
chr4 (118-272)||(2243994-2244149)
chr4 (648-678)||(7481022-7481052)
chr4 (94-216)||(22030125-22030246)
chr4 (118-216)||(55414447-55414545)
chr4 (94-215)||(15177230-15177351)
chr4 (118-215)||(20108954-20109051)
chr4 (118-214)||(11347723-11347819)
chr4 (94-186)||(41336682-41336773)
[»] chr2 (17 HSPs)
chr2 (94-216)||(32592508-32592629)
chr2 (109-267)||(43279506-43279661)
chr2 (108-216)||(39073716-39073824)
chr2 (94-212)||(39659540-39659657)
chr2 (118-215)||(28206212-28206309)
chr2 (170-266)||(26202025-26202120)
chr2 (127-214)||(11201411-11201498)
chr2 (95-177)||(15305579-15305661)
chr2 (160-216)||(20952342-20952398)
chr2 (98-170)||(42868534-42868606)
chr2 (94-177)||(42659217-42659300)
chr2 (264-298)||(13325672-13325706)
chr2 (94-170)||(28330372-28330448)
chr2 (116-177)||(42420360-42420421)
chr2 (160-216)||(12289784-12289840)
chr2 (168-216)||(30331755-30331803)
chr2 (160-216)||(33319839-33319895)
[»] chr7 (22 HSPs)
chr7 (96-216)||(420283-420403)
chr7 (118-213)||(30570961-30571056)
chr7 (94-216)||(4970820-4970937)
chr7 (122-216)||(20526395-20526489)
chr7 (155-216)||(46280299-46280360)
chr7 (94-190)||(9210549-9210644)
chr7 (169-272)||(19022557-19022659)
chr7 (130-188)||(21201554-21201612)
chr7 (102-216)||(38138506-38138620)
chr7 (155-249)||(45338431-45338523)
chr7 (166-267)||(45790403-45790502)
chr7 (155-272)||(19302535-19302647)
chr7 (136-216)||(39907766-39907846)
chr7 (93-228)||(48140136-48140269)
chr7 (264-307)||(18765386-18765429)
chr7 (162-212)||(27863756-27863806)
chr7 (155-216)||(34744010-34744071)
chr7 (155-216)||(43694597-43694658)
chr7 (93-190)||(45806530-45806627)
chr7 (142-214)||(8960656-8960728)
chr7 (101-149)||(23989578-23989626)
chr7 (160-216)||(49019855-49019911)
[»] chr1 (20 HSPs)
chr1 (155-267)||(3233992-3234103)
chr1 (94-221)||(42174778-42174903)
chr1 (127-258)||(41184636-41184766)
chr1 (115-213)||(1432457-1432555)
chr1 (155-249)||(17603379-17603472)
chr1 (136-273)||(473127-473262)
chr1 (94-190)||(7861999-7862095)
chr1 (136-216)||(13809961-13810041)
chr1 (160-216)||(49938734-49938790)
chr1 (131-206)||(14576690-14576765)
chr1 (94-216)||(37631586-37631708)
chr1 (115-173)||(45145168-45145226)
chr1 (118-216)||(47432041-47432138)
chr1 (155-272)||(51929511-51929627)
chr1 (144-216)||(1510337-1510409)
chr1 (94-190)||(33541761-33541857)
chr1 (155-227)||(33546469-33546541)
chr1 (160-216)||(36872575-36872631)
chr1 (118-206)||(41505632-41505719)
chr1 (168-216)||(43230797-43230845)
[»] chr3 (21 HSPs)
chr3 (94-216)||(20170444-20170566)
chr3 (94-190)||(24684876-24684972)
chr3 (93-216)||(20880397-20880519)
chr3 (161-216)||(30443881-30443936)
chr3 (94-216)||(39980650-39980772)
chr3 (119-216)||(36631078-36631175)
chr3 (136-216)||(36189529-36189609)
chr3 (101-221)||(4400974-4401092)
chr3 (96-213)||(18405861-18405979)
chr3 (104-177)||(10704639-10704712)
chr3 (155-216)||(47132313-47132374)
chr3 (156-216)||(901907-901967)
chr3 (102-206)||(30956663-30956767)
chr3 (102-206)||(30972475-30972579)
chr3 (127-215)||(49034291-49034379)
chr3 (118-204)||(35959495-35959581)
chr3 (115-213)||(44061053-44061151)
chr3 (161-206)||(12862285-12862330)
chr3 (96-216)||(21335597-21335718)
chr3 (155-216)||(33231710-33231770)
chr3 (160-201)||(47587455-47587496)
[»] chr5 (13 HSPs)
chr5 (96-190)||(6521028-6521121)
chr5 (127-243)||(32009646-32009762)
chr5 (94-216)||(16458006-16458127)
chr5 (135-216)||(16937910-16937991)
chr5 (136-265)||(34102292-34102421)
chr5 (93-216)||(29925761-29925884)
chr5 (94-227)||(10639874-10640007)
chr5 (161-206)||(27298061-27298106)
chr5 (94-216)||(25461013-25461134)
chr5 (94-151)||(7999127-7999184)
chr5 (115-216)||(12425513-12425614)
chr5 (155-199)||(12554501-12554545)
chr5 (160-216)||(43300865-43300921)
[»] chr8 (10 HSPs)
chr8 (94-190)||(38750279-38750375)
chr8 (160-227)||(11861791-11861858)
chr8 (94-213)||(12976134-12976253)
chr8 (96-267)||(16825515-16825684)
chr8 (118-216)||(26771210-26771308)
chr8 (161-216)||(18133644-18133699)
chr8 (155-278)||(37945579-37945700)
chr8 (115-216)||(10114432-10114532)
chr8 (155-216)||(15180523-15180584)
chr8 (130-226)||(29205765-29205861)


Alignment Details
Target: chr6 (Bit Score: 658; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 658; E-Value: 0
Query Start/End: Original strand, 1 - 680
Target Start/End: Original strand, 6200387 - 6201063
Alignment:
Q  1 aagttagacagcaaacaaaaggttatgcaatgggtgtatatgcaaattagggcttgtttggataaacagtttataagatgagtacttaaaacaataagcg 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6200387 aagtttgacagcaaacaaaaggttatgcaatgggtgtatatgcaaattagggcttgtttggataaacagtttataagatgagtacttaaaacaataagcg 6200486  T
Q  101 cttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6200487 cttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattgg 6200586  T
Q  201 agaactaatgaaaatatgttagaaaaatatttataaaaattgttataaggtattttcaaaaattctcacaaaacttatatcaattgataagctcaaatta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6200587 agaactaatgaaaatatgttagaaaaatatttataaaaattgttataaggtattttcaaaaattctcacaaaacttatatcaattgataagctcaaatta 6200686  T
Q  301 agcaatcaaaacccatccttagtttctctcactttgatattaatttttcctctctaattctctataaaaggttgataatgttagtggtggatagttatgt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6200687 agcaatcaaaacccatccttagtttctctcactttgatattaatttttcctctctaattctctataaaaggttgataatgttagtggtggatagttatgt 6200786  T
Q  401 tatatcaaactcgatggattatgaggtgaaggtaaagattgagattgcttgatttttgaggtaattaggttgttttgtgtaactgtgagagtgtccttgt 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||| |||||||||||    
T  6200787 tatatcaaactcgatggattatgaggtgaaggtaaagattgagattgcttgatttttgagg---ttaggttgttttgtgtaactgtgacagtgtccttgt 6200883  T
Q  501 ttacttgttggaggtagaaaacaaggaagggaagaaaaagacctaataaaaatactacattaattgaacactatagattatggtacgagactatgataaa 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6200884 ttacttgttggaggtagaaaacaaggaagggaagaaaaagacctaataaaaatactacattaattgaacactatagattatggtacgagactatgataaa 6200983  T
Q  601 tcttacttgatcatagtttcaaataaaatttatgagtgtacactcttaaataaaaataattaaaagagaaaatgattact 680  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6200984 tcttacttgatcatagtttcaaataaaatttatgagtgtacactcttaaataaaaataattaaaagagaaaatgattact 6201063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 93 - 208
Target Start/End: Original strand, 18076116 - 18076231
Alignment:
Q  93 aataagcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaa 192  Q
    ||||||| |||||| ||||| ||| ||||| || |||||||| |||||  ||||||| | | |||| ||||| ||  |||||||| ||||||||||||      
T  18076116 aataagcacttatgtataagcttgcataagttatttttatagcaaaagagaaaataaggttaaattgtttttctaattgctataagttgtttttataagc 18076215  T
Q  193 tatattggagaactaa 208  Q
    ||||||| ||||||||    
T  18076216 tatattgaagaactaa 18076231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 216
Target Start/End: Original strand, 6538438 - 6538555
Alignment:
Q  94 ataagcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaat 193  Q
    ||||||||||||| ||||| ||| ||||| || |||| ||| |||||     |||||| | |||| ||| |||||||||||||| |||||||||||   |    
T  6538438 ataagcgcttatgtataagcttgcataagttagttttttagcaaaag-----ataatgttaaattgtttatgtatatgctataagttgtttttataggct 6538532  T
Q  194 atattggagaactaatgaaaata 216  Q
    ||||||||||||| || ||||||    
T  6538533 atattggagaacttattaaaata 6538555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 6536597 - 6536658
Alignment:
Q  155 aattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaata 216  Q
    |||| |||||||||||||||||| ||||||||| ||  |||||||||||| | |||||||||    
T  6536597 aattgtttttgtatatgctataagttgtttttagaagctatattggagaatttatgaaaata 6536658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 118 - 202
Target Start/End: Original strand, 8147647 - 8147731
Alignment:
Q  118 ataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattggag 202  Q
    |||||||| |||||||| ||||| |||||||| | |||||| ||||||||||| ||| ||  |||||| ||||  ||||||||||    
T  8147647 ataagctatttttatagcaaaagataaaataaagttgaattgtttttgtatattctaaaagatgttttcataagctatattggag 8147731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 6909960 - 6909902
Alignment:
Q  155 aattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaa 213  Q
    |||| |||||||||||||||||| ||||||| |||| |||| |||||||| | ||||||    
T  6909960 aattgtttttgtatatgctataagttgttttcataacatatcttggagaatttatgaaa 6909902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 100 - 170
Target Start/End: Original strand, 30536405 - 30536475
Alignment:
Q  100 gcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatat 170  Q
    ||||||| ||||||||| |||||||| | |||||| ||| | |||||||||| | |||| |||||||||||    
T  30536405 gcttatgtataagtttgcataagctattattatagcaaatgataaaataatgttaaattgtttttgtatat 30536475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 100 - 206
Target Start/End: Original strand, 31623487 - 31623593
Alignment:
Q  100 gcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattg 199  Q
    ||||||||||||| ||  || ||||| |||||||| ||||| |||||| | | | ||||  | |||| ||||||||||  |||||||||| | |||||||    
T  31623487 gcttatgcataagcttacattagctatttttatagaaaaagataaaatgacgttaaattgctcttgtgtatgctataagctgtttttatacactatattg 31623586  T
Q  200 gagaact 206  Q
    |||||||    
T  31623587 gagaact 31623593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 8201215 - 8201276
Alignment:
Q  155 aattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaata 216  Q
    |||| ||||||| ||| |||||| ||||||||||||  ||| |||||||||| |||||||||    
T  8201215 aattgtttttgtgtatcctataagttgtttttataagttatgttggagaacttatgaaaata 8201276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 492 - 524
Target Start/End: Original strand, 6194546 - 6194578
Alignment:
Q  492 tgtccttgtttacttgttggaggtagaaaacaa 524  Q
    ||||||||||| |||||||||||||||||||||    
T  6194546 tgtccttgtttgcttgttggaggtagaaaacaa 6194578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 96 - 263
Target Start/End: Complemental strand, 54069564 - 54069398
Alignment:
Q  96 aagcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatat 195  Q
    |||| |||||| ||||| ||| ||| |||| |||||||  ||||| |||||||||| | |||| |||||||||||||||||| ||||||||||||  |||    
T  54069564 aagcacttatgtataagcttgcatatgctatttttatatcaaaagataaaataatgttaaattgtttttgtatatgctataatttgtttttataagttat 54069465  T
Q  196 attggagaactaatgaaaatatgttagaaaaatatttataaaaattgttataaggtattttcaaaaat 263  Q
    |||| |||||  ||||||||| |||| ||||    |||| ||||||||| |||| | |||||||||||    
T  54069464 attgaagaacatatgaaaataagtta-aaaacagcttatgaaaattgttgtaagctgttttcaaaaat 54069398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 94 - 216
Target Start/End: Complemental strand, 50681238 - 50681116
Alignment:
Q  94 ataagcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaat 193  Q
    ||||||| ||||| ||||| ||  | |||||| |||||||| | ||| |||||||||| | |||| |||||||||||||||||| |||||| |||||  |    
T  50681238 ataagcgtttatgtataagcttacaaaagctatttttataggataagataaaataatgttaaattgtttttgtatatgctataagttgtttatataagct 50681139  T
Q  194 atattggagaactaatgaaaata 216  Q
    ||||||||||| | |||||||||    
T  50681138 atattggagaaattatgaaaata 50681116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 216
Target Start/End: Original strand, 9760372 - 9760483
Alignment:
Q  105 tgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattggagaa 204  Q
    |||||||| ||  ||||| || |||||| | ||||| |||||||| | | |||| |||||  ||||||||||| ||||||||||||  ||||||||||||    
T  9760372 tgcataagctttcataagttatttttattgaaaaagataaaataaagttaaattcttttttaatatgctataagttgtttttataagctatattggagaa 9760471  T
Q  205 ctaatgaaaata 216  Q
    || |||||||||    
T  9760472 cttatgaaaata 9760483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 53294202 - 53294143
Alignment:
Q  155 aattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaa 214  Q
    |||| |||||||||||||||||| ||||||||||||| |||||| ||||||| |||||||    
T  53294202 aattgtttttgtatatgctataagttgtttttataaactatattagagaacttatgaaaa 53294143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 96 - 221
Target Start/End: Complemental strand, 33587101 - 33586977
Alignment:
Q  96 aagcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatat 195  Q
    ||||||||||| ||||| ||| |||||||| ||||||||  |||| ||||| || | ||||   |||||||||||| ||||  ||||||||||||  |||    
T  33587101 aagcgcttatgtataagcttgcataagctatttttatagcgaaagataaaacaacgttgaacg-tttttgtatatgttataggttgtttttataagctat 33587003  T
Q  196 attggagaactaatgaaaatatgtta 221  Q
    || |||||||| ||||||||| ||||    
T  33587002 atcggagaacttatgaaaataagtta 33586977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 272
Target Start/End: Complemental strand, 15173449 - 15173275
Alignment:
Q  94 ataagcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaat 193  Q
    |||||||| |||| ||||| ||| |||||||||||| ||||  |||| |||||||| ||| |||| || || ||| |||||||| | ||||||||||  |    
T  15173449 ataagcgcatatgtataagcttgcataagctactttaatagctaaagataaaataacgataaattgttcttctatgtgctataagtggtttttataagct 15173350  T
Q  194 atattggagaactaatgaaaatatgttagaaaaatatttataaaaattgttataaggtattttcaaaaattctcacaaa 272  Q
    ||| |||   ||||||||||||   || |||||| | |||| |||||||| ||||| |||||||| ||| |||| ||||    
T  15173349 atactgg---actaatgaaaat-catttgaaaaaaacttatgaaaattgtcataagctattttcataaagtctcccaaa 15173275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 272
Target Start/End: Complemental strand, 21731739 - 21731628
Alignment:
Q  160 tttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaatatgttagaaaaatatttataaaaattgttataaggtattttcaa 259  Q
    ||||||||| |||||||| ||||||||||||  |||||||||||| | |||||| || ||| ||||||  ||||| |||||||| ||||| | ||||||     
T  21731739 tttttgtatgtgctataagttgtttttataagctatattggagaatttatgaaagtaagtt-gaaaaaagtttatgaaaattgtgataagctgttttcat 21731641  T
Q  260 aaattctcacaaa 272  Q
    || ||||| ||||    
T  21731640 aagttctcccaaa 21731628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 204
Target Start/End: Complemental strand, 31076529 - 31076425
Alignment:
Q  100 gcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattg 199  Q
    ||||||| ||||| ||| |||||||| ||||| || ||||| ||||||||   | || | |||||||||||||||||| ||||||||||||  |||||||    
T  31076529 gcttatgtataagcttgcataagctatttttagagcaaaagataaaataagtttaaactgtttttgtatatgctataaattgtttttataagctatattg 31076430  T
Q  200 gagaa 204  Q
     ||||    
T  31076429 aagaa 31076425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 190
Target Start/End: Complemental strand, 42404145 - 42404051
Alignment:
Q  96 aagcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataa 190  Q
    |||| |||||| ||||||||| ||| |||  |||||||| ||||| |||||||||| | |||| |||||||| ||||| |||  |||||||||||    
T  42404145 aagcacttatgtataagtttgcatacgctctttttatagcaaaagataaaataatgttaaattgtttttgtacatgctgtaagctgtttttataa 42404051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 216
Target Start/End: Original strand, 3155545 - 3155646
Alignment:
Q  115 tgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaa 214  Q
    ||||||||||| || ||||| ||||| |||||||| | | |||| |||||||| | |||| ||  |||||| ||||| ||| ||| ||||||||||||||    
T  3155545 tgtataagctatttctatagcaaaagataaaataaagttaaattgtttttgtacaagctacaagctgttttcataaactatcttgaagaactaatgaaaa 3155644  T
Q  215 ta 216  Q
    ||    
T  3155645 ta 3155646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 264
Target Start/End: Complemental strand, 7839449 - 7839341
Alignment:
Q  155 aattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaatatgttagaaaaatatttataaaaattgttataaggtatt 254  Q
    |||| |||||||||||||||||| ||||||||||||  || |||| |||||| | ||||||| ||| ||||||   |||| |||||||| ||||| | ||    
T  7839449 aattgtttttgtatatgctataaattgtttttataagctagattgaagaacttacgaaaataagtt-gaaaaaagcttatgaaaattgtcataagttgtt 7839351  T
Q  255 ttcaaaaatt 264  Q
    |||| |||||    
T  7839350 ttcataaatt 7839341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 46588175 - 46588090
Alignment:
Q  142 taaaataatgatgaattatttttgtatatgctataacttgttttt-ataaaatatattggagaactaatgaaaatatgttagaaaa 226  Q
    |||||||| | | ||| |||||| |||||||||||| |||||||| ||||  |||||||||||||| ||||||||| ||| |||||    
T  46588175 taaaataacggtaaatcatttttatatatgctataagttgttttttataagttatattggagaacttatgaaaataagttggaaaa 46588090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 216
Target Start/End: Original strand, 54425968 - 54426086
Alignment:
Q  96 aagcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatat 195  Q
    ||||||||||| ||||| ||| ||||||||||||| ||| |  || ||||||||   | |||| ||| |  ||||| ||||| ||||||||||||  |||    
T  54425968 aagcgcttatgtataagcttgcataagctacttttgtagcagcagataaaataacactaaattgtttat--atatgttataagttgtttttataatctat 54426065  T
Q  196 attggagaactaatgaaaata 216  Q
    ||||||||||| |||||||||    
T  54426066 attggagaacttatgaaaata 54426086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 136 - 216
Target Start/End: Complemental strand, 39691250 - 39691170
Alignment:
Q  136 aaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaata 216  Q
    ||||| |||||||||| | || |  ||||||||||||||||| ||||||||||||  ||||||| |||||| | |||||||    
T  39691250 aaaagataaaataatgttaaaattgttttgtatatgctataagttgtttttataagctatattgaagaacttacgaaaata 39691170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 118 - 272
Target Start/End: Original strand, 2243994 - 2244149
Alignment:
Q  118 ataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtat-atgctataacttgtttttataaaa--tatattggagaactaatgaaaa 214  Q
    |||||||| |||||||| ||||| |||||||||  |   || ||||||||| ||||||||| ||||||| ||| ||  |||||||||||||| |||||||    
T  2243994 ataagctagttttatag-aaaagataaaataatattacgttgtttttgtattatgctataagttgttttaatataagctatattggagaacttatgaaaa 2244092  T
Q  215 tatgttagaaaaatatttataaaaattgttataaggtattttcaaaaattctcacaaa 272  Q
    || | | ||||||  ||||| || ||||| ||||| | |||| |||||||||| ||||    
T  2244093 taaggt-gaaaaaagtttatgaatattgtcataagctgtttttaaaaattctcccaaa 2244149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 648 - 678
Target Start/End: Complemental strand, 7481052 - 7481022
Alignment:
Q  648 aaataaaaataattaaaagagaaaatgatta 678  Q
    |||||||||||||||||||||||||||||||    
T  7481052 aaataaaaataattaaaagagaaaatgatta 7481022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 94 - 216
Target Start/End: Original strand, 22030125 - 22030246
Alignment:
Q  94 ataagcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaat 193  Q
    ||||||||||||| ||||| |   |||||||| || ||||| ||| | |||||||| | |  |||||||||||||||||||||| ||||| ||| ||  |    
T  22030125 ataagcgcttatgtataagctcacataagctatttctatag-aaaggataaaataaagttatattatttttgtatatgctataagttgttcttacaagtt 22030223  T
Q  194 atattggagaactaatgaaaata 216  Q
    | ||| ||||||| |||||||||    
T  22030224 aaattagagaacttatgaaaata 22030246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 118 - 216
Target Start/End: Complemental strand, 55414545 - 55414447
Alignment:
Q  118 ataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaata 216  Q
    |||||||| || ||| | ||||| |||||||| | | | || |||||| ||||||||||| ||||||| ||||  ||| |||||||||| |||||||||    
T  55414545 ataagctatttctattggaaaagataaaataaagttaatttttttttgcatatgctataaattgttttcataagttatcttggagaacttatgaaaata 55414447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 215
Target Start/End: Complemental strand, 15177351 - 15177230
Alignment:
Q  94 ataagcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaat 193  Q
    |||||| | |||| ||||| ||| |||||||| ||| ||||  |||| |||||||| | | |||| || || ||| |||||||| | ||||||||||  |    
T  15177351 ataagcacgtatgtataagcttgcataagctattttaatagctaaagataaaataacgttaaattgttcttctatgtgctataagtggtttttataagct 15177252  T
Q  194 atattggagaactaatgaaaat 215  Q
    ||| | ||||||||||||||||    
T  15177251 atactagagaactaatgaaaat 15177230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 215
Target Start/End: Original strand, 20108954 - 20109051
Alignment:
Q  118 ataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaat 215  Q
    |||||||| ||||| || ||||| |||||| | | | | || |||||||||||| |||||  ||||||||||| ||||||| |||||||  |||||||    
T  20108954 ataagctagttttagaggaaaagataaaatgaagttaagttgtttttgtatatggtataagctgtttttataagatatattagagaacttttgaaaat 20109051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 118 - 214
Target Start/End: Original strand, 11347723 - 11347819
Alignment:
Q  118 ataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaa 214  Q
    |||| ||| |||||||| ||||| ||||||||   |  || |||||||||||| |||||| || ||||||||| || ||| |||||||| |||||||    
T  11347723 ataaactatttttatagcaaaagataaaataactttagatcatttttgtatatactataagttatttttataagatttatcggagaacttatgaaaa 11347819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 41336682 - 41336773
Alignment:
Q  94 ataagcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgttttt 186  Q
    |||||| |||||| ||| | ||| |||||||| |||||||| ||| | |||||||| | | |||| |||||||||||| ||||| ||||||||    
T  41336682 ataagcacttatgtataggcttgcataagctatttttatagcaaa-gataaaataaagttaaattgtttttgtatatgttataaattgttttt 41336773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 7e-20; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 94 - 216
Target Start/End: Original strand, 32592508 - 32592629
Alignment:
Q  94 ataagcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaat 193  Q
    ||||||||||||| ||||| ||| |||| ||| |||||||| ||||| |||||||||| | |||| |||| ||||| ||||||| ||||||||||||       
T  32592508 ataagcgcttatgtataagcttgcataaactatttttatagaaaaagataaaataatgttaaattgtttt-gtatacgctataagttgtttttataagca 32592606  T
Q  194 atattggagaactaatgaaaata 216  Q
    ||||||||||||| |||||||||    
T  32592607 atattggagaacttatgaaaata 32592629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 267
Target Start/End: Complemental strand, 43279661 - 43279506
Alignment:
Q  109 taagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattggagaactaa 208  Q
    |||| ||| |||||||| |||||||  ||||| ||||||||||   |||| |||||||||  ||||||| ||||||||||||  ||||||||||||||      
T  43279661 taagcttgcataagctatttttatatcaaaagataaaataatgtgaaattgtttttgtat--gctataagttgtttttataagctatattggagaacttg 43279564  T
Q  209 tgaaaatatgttagaaaaatatttataaaaattgttataaggtattttcaaaaattctc 267  Q
    |||||||| ||| ||||||   |||| |||||||| ||||| | |||||| ||||||||    
T  43279563 tgaaaataagtt-gaaaaaagcttatgaaaattgtcataagctgttttcataaattctc 43279506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 108 - 216
Target Start/End: Complemental strand, 39073824 - 39073716
Alignment:
Q  108 ataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattggagaacta 207  Q
    ||||||||| |||||  | ||||| | |||||| |||||||| | | |||| |||||||||||||||||| |  |||||||||  |||||||||||||||    
T  39073824 ataagtttgcataagacatttttacattaaaagataaaataacgttaaattgtttttgtatatgctataagtaatttttataagctatattggagaacta 39073725  T
Q  208 atgaaaata 216  Q
     ||||||||    
T  39073724 gtgaaaata 39073716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 212
Target Start/End: Complemental strand, 39659657 - 39659540
Alignment:
Q  94 ataagcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaat 193  Q
    ||||||||||||| ||||||||| |||  ||| |||||||  ||||| || ||||| | | |||| ||||||| |||| ||||||||||||||||||  |    
T  39659657 ataagcgcttatgtataagtttggatacacta-ttttataacaaaagatacaataacgttaaattgtttttgtctatgttataacttgtttttataagct 39659559  T
Q  194 atattggagaactaatgaa 212  Q
    ||||| ||||||| |||||    
T  39659558 atattagagaacttatgaa 39659540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 118 - 215
Target Start/End: Original strand, 28206212 - 28206309
Alignment:
Q  118 ataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaat 215  Q
    |||||||| |||||||  ||||| |||||  ||| | |||||||||| |||||| ||||| ||||||||||||  |||||||||||||| || |||||    
T  28206212 ataagctatttttatatcaaaagataaaacgatgttaaattatttttttatatgttataaattgtttttataagctatattggagaacttataaaaat 28206309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 266
Target Start/End: Original strand, 26202025 - 26202120
Alignment:
Q  170 tgctataacttgtttttataaaatatattggagaactaatgaaaatatgttagaaaaatatttataaaaattgttataaggtattttcaaaaattct 266  Q
    |||||||| |||||||||||| ||||||||||||||| ||||||||| ||| ||||||   |||| |||||||| ||||| | || ||| |||||||    
T  26202025 tgctataagttgtttttataagatatattggagaacttatgaaaataagtt-gaaaaaagcttatgaaaattgtcataagttgttctcataaattct 26202120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 127 - 214
Target Start/End: Complemental strand, 11201498 - 11201411
Alignment:
Q  127 ttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaa 214  Q
    ||||||| |||||| |||||||| |   |||| ||||||||||| |||||| |||||||| || | |||||||||||||| |||||||    
T  11201498 ttttatattaaaagataaaataaggtaaaattgtttttgtatatactataagttgtttttgtatactatattggagaacttatgaaaa 11201411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 15305579 - 15305661
Alignment:
Q  95 taagcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataa 177  Q
    |||| |||| || ||||| ||| |||||||| |||||||| ||| | |||||||||| | |||||||||||||| ||||||||    
T  15305579 taagtgcttgtgtataagcttgcataagctatttttatagcaaatgataaaataatgttaaattatttttgtatttgctataa 15305661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 20952342 - 20952398
Alignment:
Q  160 tttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaata 216  Q
    ||||| |||||||||||| |||||||||| |  |||||||||||||| |||||||||    
T  20952342 tttttttatatgctataagttgtttttattagctatattggagaacttatgaaaata 20952398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 42868606 - 42868534
Alignment:
Q  98 gcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatat 170  Q
    ||||||||||||||||||  |||||||| ||| |||| ||||| |||||||| | | |||| |||||||||||    
T  42868606 gcgcttatgcataagtttacataagctattttcatagaaaaagataaaataaagttaaattgtttttgtatat 42868534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 177
Target Start/End: Complemental strand, 42659300 - 42659217
Alignment:
Q  94 ataagcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataa 177  Q
    ||||||||||||| ||||| ||  |||||||| |||||| | ||| |||||||||| |   |||| ||||||||||||||||||    
T  42659300 ataagcgcttatgtataagcttacataagctatttttatggaaaatggtaaaataaagtgaaattgtttttgtatatgctataa 42659217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 264 - 298
Target Start/End: Original strand, 13325672 - 13325706
Alignment:
Q  264 tctcacaaaacttatatcaattgataagctcaaat 298  Q
    ||||| |||||||||||||||||||||||||||||    
T  13325672 tctcataaaacttatatcaattgataagctcaaat 13325706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 170
Target Start/End: Complemental strand, 28330448 - 28330372
Alignment:
Q  94 ataagcgcttatgcataagtttgtataagctactt-ttatagtaaaaggtaaaataatgatgaattatttttgtatat 170  Q
    |||||||| |||||||||| |||| ||||||| || || ||| |||||||||||||| | | ||||||||||||||||    
T  28330448 ataagcgcatatgcataagcttgtgtaagctatttgttttag-aaaaggtaaaataaagtttaattatttttgtatat 28330372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 42420421 - 42420360
Alignment:
Q  116 gtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataa 177  Q
    |||||||||| |||||||| ||||| |||||||| | | |||| |||||||||||| |||||    
T  42420421 gtataagctatttttatagcaaaagataaaataacgttaaattgtttttgtatatgatataa 42420360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 12289784 - 12289840
Alignment:
Q  160 tttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaata 216  Q
    |||| ||| ||| ||||| ||||||||||||  |||||||||||||| |||||||||    
T  12289784 ttttggtacatgttataagttgtttttataatttatattggagaacttatgaaaata 12289840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 30331755 - 30331803
Alignment:
Q  168 tatgctataacttgtttttataaaatatattggagaactaatgaaaata 216  Q
    ||||||||||  | ||||||||| ||||||||||||||| |||||||||    
T  30331755 tatgctataagctatttttataagatatattggagaacttatgaaaata 30331803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 33319895 - 33319839
Alignment:
Q  160 tttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaata 216  Q
    ||||||||||| ||||||  |||||| ||||| ||| |||||||||| |||||||||    
T  33319895 tttttgtatatactataaactgttttcataaactatcttggagaacttatgaaaata 33319839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 96 - 216
Target Start/End: Original strand, 420283 - 420403
Alignment:
Q  96 aagcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatat 195  Q
    ||||| ||||| ||||| ||| ||||||||  ||||||| ||||| |||||||||| | |||| |||||||||||||||||| ||||||   |||  |||    
T  420283 aagcgtttatgtataagcttgcataagctatgtttatagcaaaagataaaataatgttcaattgtttttgtatatgctataagttgtttccgtaagctat 420382  T
Q  196 attggagaactaatgaaaata 216  Q
    ||||||||||| |||||||||    
T  420383 attggagaacttatgaaaata 420403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 213
Target Start/End: Complemental strand, 30571056 - 30570961
Alignment:
Q  118 ataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaa 213  Q
    ||||||||||| |||||  ||||||||||||| | | |||||||||||||||||||||||  | |||||||||  || ||||||||||| ||||||    
T  30571056 ataagctacttatatagcgaaaggtaaaataaagttaaattatttttgtatatgctataagctatttttataacctacattggagaacttatgaaa 30570961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 94 - 216
Target Start/End: Complemental strand, 4970937 - 4970820
Alignment:
Q  94 ataagcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaat 193  Q
    ||||||| ||||| ||||| ||  |||||||| || ||||| ||||| ||||||||     |||| |||||||||||||||||| || ||||||||| ||    
T  4970937 ataagcggttatgtataagcttacataagctatttctatagcaaaagataaaataa-----aattgtttttgtatatgctataagttctttttataagat 4970843  T
Q  194 atattggagaactaatgaaaata 216  Q
    ||||| ||||||| |||||||||    
T  4970842 atattagagaacttatgaaaata 4970820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 216
Target Start/End: Original strand, 20526395 - 20526489
Alignment:
Q  122 gctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaata 216  Q
    ||||||| ||||| ||||| |||||||| | | |||||| |||||| |||||||||  |||||| ||||  ||| ||||||||||||||||||||    
T  20526395 gctacttatatagcaaaagataaaataaagttaaattatgtttgtacatgctataagctgttttcataagctattttggagaactaatgaaaata 20526489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 46280360 - 46280299
Alignment:
Q  155 aattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaata 216  Q
    |||| ||||||||||||||||||  |||||||||||  |||||||||||||| |||||||||    
T  46280360 aattgtttttgtatatgctataagctgtttttataagctatattggagaacttatgaaaata 46280299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 190
Target Start/End: Original strand, 9210549 - 9210644
Alignment:
Q  94 ataagcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataa 190  Q
    |||| |||||||| ||||| ||| ||||||||||||||||| ||||  |||||| ||| | |||| ||||| |||||||||||| ||||||| ||||    
T  9210549 ataatcgcttatgtataagcttgcataagctacttttatagaaaaaaataaaatgatgttaaattcttttt-tatatgctataagttgttttaataa 9210644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 169 - 272
Target Start/End: Complemental strand, 19022659 - 19022557
Alignment:
Q  169 atgctataacttgtttttataaaatatattggagaactaatgaaaatatgttagaaaaatatttataaaaattgttataaggtattttcaaaaattctca 268  Q
    ||||||||| ||||||||||||  |||||||||||||| ||||||||| ||| ||| |  | |||| |||||||| ||||| | |||||| ||||||||     
T  19022659 atgctataagttgtttttataagctatattggagaacttatgaaaataagtt-gaagacaacttatgaaaattgtcataagttgttttcataaattctcc 19022561  T
Q  269 caaa 272  Q
    ||||    
T  19022560 caaa 19022557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 21201554 - 21201612
Alignment:
Q  130 tatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttat 188  Q
    |||||| |||| |||||||| | | ||||||||| ||||||||||||||||||||||||    
T  21201554 tatagttaaagataaaataacgttaaattattttcgtatatgctataacttgtttttat 21201612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 216
Target Start/End: Complemental strand, 38138620 - 38138506
Alignment:
Q  102 ttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattgga 201  Q
    ||||| ||||| ||| |||||||| |||||||||| ||| |||| ||| | |  |||  ||||||||||||||||| |||||||||| |  |||||||      
T  38138620 ttatgtataaggttggataagctatttttatagtataagataaagtaacgttacattgattttgtatatgctataagttgtttttattagctatattgac 38138521  T
Q  202 gaactaatgaaaata 216  Q
    ||||| |||||||||    
T  38138520 gaacttatgaaaata 38138506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 249
Target Start/End: Original strand, 45338431 - 45338523
Alignment:
Q  155 aattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaatatgttagaaaaatatttataaaaattgttataag 249  Q
    |||| |||||||||||||| ||| |||||||| |||  |||||||||||||| ||||||||| ||| |||||| | | ||||||||||| |||||    
T  45338431 aattgtttttgtatatgctgtaagttgttttt-taagctatattggagaactgatgaaaataagtt-gaaaaaaactaataaaaattgtcataag 45338523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 267
Target Start/End: Complemental strand, 45790502 - 45790403
Alignment:
Q  166 tatatgctataacttgtttttataaaatatattggagaactaatgaaaatatgttagaaaaatatttataaaaattgttataaggtattttcaaaaattc 265  Q
    |||| ||||||| ||||||||||||| ||||||||| |||| ||||||||| | | ||||||  ||| |||||||||| ||||| |||||||| || |||    
T  45790502 tataagctataagttgtttttataaactatattggataacttatgaaaataagct-gaaaaagcttt-taaaaattgtcataagttattttcataagttc 45790405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 155 - 272
Target Start/End: Complemental strand, 19302647 - 19302535
Alignment:
Q  155 aattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaatatgttagaaaaatatttataaaaattgttataaggtatt 254  Q
    |||| |||||||||||| ||||| ||||||||||||  ||||    |||||| ||||||||| ||| ||||||  ||||| |||||||| ||||| | ||    
T  19302647 aattgtttttgtatatgttataagttgtttttataagctata----agaacttatgaaaataagtt-gaaaaaagtttatgaaaattgtcataagctgtt 19302553  T
Q  255 ttcaaaaattctcacaaa 272  Q
    |||| |||||||| ||||    
T  19302552 ttcataaattctcccaaa 19302535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 39907766 - 39907846
Alignment:
Q  136 aaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaata 216  Q
    |||| ||||||||| | | |||| |||||||||| |||||||  |||||| ||||| ||| || |||||||||||||||||    
T  39907766 aaaaagtaaaataaggttaaattgtttttgtataagctataaactgttttcataaactatcttagagaactaatgaaaata 39907846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 93 - 228
Target Start/End: Original strand, 48140136 - 48140269
Alignment:
Q  93 aataagcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaa 192  Q
    |||||||||||||| ||||| ||| |||||||| |||||||  ||||| ||||||||   |  ||| |||||  ||||||||||| |||||||| |||      
T  48140136 aataagcgcttatgtataagcttgcataagctatttttataacaaaagataaaataa--ctagattgtttttcaatatgctataagttgtttttctaatt 48140233  T
Q  193 tatattggagaactaatgaaaatatgttagaaaaat 228  Q
     |||||||| |||| ||||||| || ||| ||||||    
T  48140234 aatattggataacttatgaaaaaatcttataaaaat 48140269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 264 - 307
Target Start/End: Original strand, 18765386 - 18765429
Alignment:
Q  264 tctcacaaaacttatatcaattgataagctcaaattaagcaatc 307  Q
    ||||||||||||||| ||||| ||||||||||||| ||||||||    
T  18765386 tctcacaaaacttatgtcaatagataagctcaaataaagcaatc 18765429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 27863806 - 27863756
Alignment:
Q  162 tttgtatatgctataacttgtttttataaaatatattggagaactaatgaa 212  Q
    |||||||||||||||| ||||||| ||||| |||||| ||||||| |||||    
T  27863806 tttgtatatgctataagttgttttaataaactatattagagaacttatgaa 27863756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 34744010 - 34744071
Alignment:
Q  155 aattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaata 216  Q
    |||| |||||||||||| ||||| ||||||| ||||  |||||||||||||| || ||||||    
T  34744010 aattgtttttgtatatggtataagttgttttcataagctatattggagaacttataaaaata 34744071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 43694658 - 43694597
Alignment:
Q  155 aattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaata 216  Q
    |||| ||||||||||||||||||  |||||||||||  ||||| | |||||| |||||||||    
T  43694658 aattgtttttgtatatgctataagctgtttttataagctatatcgaagaacttatgaaaata 43694597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 190
Target Start/End: Complemental strand, 45806627 - 45806530
Alignment:
Q  93 aataagcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataa 190  Q
    ||||||| |||||| ||||| ||| ||||||||  ||||||| |||||  ||||||| | | |||| ||||| ||  |||||||| ||||||||||||    
T  45806627 aataagcacttatgtataagcttgcataagctatgtttatagcaaaagagaaaataacgttaaattgtttttctaattgctataagttgtttttataa 45806530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 8960728 - 8960656
Alignment:
Q  142 taaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaa 214  Q
    |||||||| | | |||| |||||||||||| ||| | | ||||||||||| |||||| ||||||||| |||||    
T  8960728 taaaataaagttaaattgtttttgtatatgttatgagtagtttttataaactatattagagaactaaagaaaa 8960656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 23989626 - 23989578
Alignment:
Q  101 cttatgcataagtttgtataagctacttttatagtaaaaggtaaaataa 149  Q
    |||||| ||||||||| |||| ||| |||||||||||||| ||||||||    
T  23989626 cttatgtataagtttgcataaactatttttatagtaaaagataaaataa 23989578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 49019855 - 49019911
Alignment:
Q  160 tttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaata 216  Q
    ||||||||||||||||||  | |||||||||  ||||||| |||||| |||||||||    
T  49019855 tttttgtatatgctataagctatttttataagttatattgtagaacttatgaaaata 49019911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 155 - 267
Target Start/End: Complemental strand, 3234103 - 3233992
Alignment:
Q  155 aattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaatatgttagaaaaatatttataaaaattgttataaggtatt 254  Q
    |||| |||||||||||||||||| ||||||||||||  |||||||||||||| ||||||||| | |||||||| | |||| |||| ||||||||| | ||    
T  3234103 aattgtttttgtatatgctataagttgtttttataagctatattggagaacttatgaaaataag-tagaaaaaaacttatgaaaactgttataagttgtt 3234005  T
Q  255 ttcaaaaattctc 267  Q
    |||| || |||||    
T  3234004 ttcataagttctc 3233992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 94 - 221
Target Start/End: Original strand, 42174778 - 42174903
Alignment:
Q  94 ataagcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaat 193  Q
    ||||| ||||||| ||||| ||| ||| |||| |||||||  ||||| |||| ||||| | || |  ||||||||||||||||| ||||||||||||  |    
T  42174778 ataagggcttatgtataagcttgcataggctatttttatatcaaaagataaagtaatgttaaagt--ttttgtatatgctataagttgtttttataagtt 42174875  T
Q  194 atattggagaactaatgaaaatatgtta 221  Q
    ||||||||||||| ||||||||| ||||    
T  42174876 atattggagaacttatgaaaataagtta 42174903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 127 - 258
Target Start/End: Complemental strand, 41184766 - 41184636
Alignment:
Q  127 ttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaatatgttagaaaa 226  Q
    |||||||| ||||| |||||||||| | |||| |||||||||||  ||||| ||| ||||||| |  |||||||| |||| ||||||||| ||| |||||    
T  41184766 ttttatagcaaaagataaaataatgttaaattgtttttgtatatattataatttggttttatataccatattggaaaacttatgaaaataagtt-gaaaa 41184668  T
Q  227 atatttataaaaattgttataaggtattttca 258  Q
    | | |||| |||||||| ||||| ||||||||    
T  41184667 aaacttatgaaaattgtcataagctattttca 41184636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 213
Target Start/End: Original strand, 1432457 - 1432555
Alignment:
Q  115 tgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaa 213  Q
    ||||||||||| || ||||||||||| |||||||  | | |||| ||||| |||| ||||||| ||||||| ||||| ||| |||||||||| ||||||    
T  1432457 tgtataagctatttctatagtaaaagataaaatagagttcaattgtttttttataagctataaattgttttcataaactatcttggagaacttatgaaa 1432555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 249
Target Start/End: Complemental strand, 17603472 - 17603379
Alignment:
Q  155 aattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaatatgttagaaaaatatttataaaaattgttataag 249  Q
    |||| |||||||||||||||||| ||||||||||||  ||||||||||||||  |||||||| ||| | ||||  ||||| |||||||| |||||    
T  17603472 aattgtttttgtatatgctataagttgtttttataagctatattggagaacttctgaaaataagtt-gtaaaaagtttatgaaaattgtcataag 17603379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 136 - 273
Target Start/End: Original strand, 473127 - 473262
Alignment:
Q  136 aaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaatatgttagaaaaatatttata 235  Q
    |||||||||||||| | | |||| |||| || |||||||||| ||||||||||||  | |||||||||||| ||||||||| ||| ||||||   ||||     
T  473127 aaaaggtaaaataaagttaaattgttttcgtgtatgctataagttgtttttataagttctattggagaacttatgaaaataagtt-gaaaaaagcttatg 473225  T
Q  236 aaaattgttataaggtattttcaaaaattctcacaaaa 273  Q
    ||||||| |||||| | |||||| || ||||| |||||    
T  473226 aaaattg-tataagcttttttcataagttctcccaaaa 473262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 190
Target Start/End: Original strand, 7861999 - 7862095
Alignment:
Q  94 ataagcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataa 190  Q
    |||||| |||||||||||| ||  |||||||| |||||||| ||||| |||||| ||| | |||| ||||||| ||||||||||  ||||| |||||    
T  7861999 ataagctcttatgcataagctttgataagctatttttatagaaaaagataaaatgatggtaaattgtttttgtctatgctataagctgtttctataa 7862095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 13809961 - 13810041
Alignment:
Q  136 aaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaata 216  Q
    ||||| |||||||| | | |||| |||||||||||||||||  ||||||||||||| |||||| |||||||  ||||||||    
T  13809961 aaaagataaaataaagttaaattgtttttgtatatgctatatattgtttttataaactatattagagaacttgtgaaaata 13810041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 49938734 - 49938790
Alignment:
Q  160 tttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaata 216  Q
    |||||||||||| ||||| ||||||||||||  |||||| ||||||| |||||||||    
T  49938734 tttttgtatatgttataagttgtttttataagctatattagagaacttatgaaaata 49938790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 206
Target Start/End: Complemental strand, 14576765 - 14576690
Alignment:
Q  131 atagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattggagaact 206  Q
    |||||||| | |||||||| | | |||| |||||||||||||||||| || |||||||||  |||||| |||||||    
T  14576765 atagtaaaggataaaataaagttaaattgtttttgtatatgctataatttttttttataagctatattagagaact 14576690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 94 - 216
Target Start/End: Complemental strand, 37631708 - 37631586
Alignment:
Q  94 ataagcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaat 193  Q
    |||||||||||| |||||| ||  ||||||||  |||||||  |||| |||||| | | | |||| ||||||| |||| ||| |  ||||||| |||  |    
T  37631708 ataagcgcttatacataagcttacataagctatctttatagagaaagataaaatgaagctaaattgtttttgtgtatgatattagctgtttttgtaagct 37631609  T
Q  194 atattggagaactaatgaaaata 216  Q
    ||||||||||||| |||||||||    
T  37631608 atattggagaacttatgaaaata 37631586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 115 - 173
Target Start/End: Original strand, 45145168 - 45145226
Alignment:
Q  115 tgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgct 173  Q
    ||||||||||| |||||||| ||||| |||||||||  | |||| ||||||||||||||    
T  45145168 tgtataagctatttttatagcaaaagataaaataatattaaattgtttttgtatatgct 45145226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 118 - 216
Target Start/End: Original strand, 47432041 - 47432138
Alignment:
Q  118 ataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaata 216  Q
    |||||||| |||||||| ||||| |||||||| | | |||| |||||| |||||||||||  || ||||||||  ||||||| |||| | |||||||||    
T  47432041 ataagctatttttatagaaaaagataaaataaagttaaattgtttttgaatatgctataaggtg-ttttataagttatattgaagaatttatgaaaata 47432138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 272
Target Start/End: Complemental strand, 51929627 - 51929511
Alignment:
Q  155 aattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaatatgttagaaaaatatttataaaaattgttataaggtatt 254  Q
    |||| ||||| |||||||  |||  |||||||||||| |||||||||||||| ||| ||||| ||| ||||||   |||| |||||||| ||||| | ||    
T  51929627 aattgtttttatatatgccttaagctgtttttataaactatattggagaacttatggaaataagtt-gaaaaaagcttatgaaaattgtcataagctgtt 51929529  T
Q  255 ttcaaaaattctcacaaa 272  Q
    ||||  ||||||| ||||    
T  51929528 ttcatgaattctcccaaa 51929511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 1510409 - 1510337
Alignment:
Q  144 aaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaata 216  Q
    |||||||| | |||| |||||||||| | ||||| ||||||||||||  | |||||||||||| | |||||||    
T  1510409 aaataatgttcaattgtttttgtataggttataagttgtttttataagctctattggagaacttacgaaaata 1510337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 94 - 190
Target Start/End: Complemental strand, 33541857 - 33541761
Alignment:
Q  94 ataagcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataa 190  Q
    ||||||||||||| ||||| ||| ||||| || ||||||||  || | || ||| ||| | |||| |||||||| ||||| ||| ||||||||||||    
T  33541857 ataagcgcttatgtataagcttgaataagatatttttatagctaaggatataatgatgttaaattctttttgtacatgctctaagttgtttttataa 33541761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 33546541 - 33546469
Alignment:
Q  155 aattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaatatgttagaaaaa 227  Q
    |||| |||||||||||||| ||| ||||||||||||  || |||| ||| || ||||||||| ||| ||||||    
T  33546541 aattctttttgtatatgctctaagttgtttttataagctagattgaagagcttatgaaaatacgtttgaaaaa 33546469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 36872575 - 36872631
Alignment:
Q  160 tttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaata 216  Q
    ||||||||||||||| || ||||||||| ||  || |||| ||||||||||||||||    
T  36872575 tttttgtatatgctacaagttgtttttacaaggtacattgtagaactaatgaaaata 36872631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 118 - 206
Target Start/End: Original strand, 41505632 - 41505719
Alignment:
Q  118 ataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattggagaact 206  Q
    |||||||| |||||||| |||| ||||| ||| | | |||| |||| ||||||| |||||  |||||||||||  ||||||||||||||    
T  41505632 ataagctatttttatag-aaaacgtaaattaaagttaaattgttttcgtatatgttataagctgtttttataagctatattggagaact 41505719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 43230845 - 43230797
Alignment:
Q  168 tatgctataacttgtttttataaaatatattggagaactaatgaaaata 216  Q
    |||||||||| ||||| |||||   ||||||||||||||||||||||||    
T  43230845 tatgctataagttgttcttataggctatattggagaactaatgaaaata 43230797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 94 - 216
Target Start/End: Original strand, 20170444 - 20170566
Alignment:
Q  94 ataagcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaat 193  Q
    ||||||||||||| || || ||| | |||||| |||||  | ||||| |||||||||| | |||| |||||||||||||||||| ||||||||| ||  |    
T  20170444 ataagcgcttatgtatcagcttgcacaagctatttttactgcaaaagataaaataatgttaaattgtttttgtatatgctataagttgtttttacaagtt 20170543  T
Q  194 atattggagaactaatgaaaata 216  Q
    || || |||||||||||||||||    
T  20170544 atttttgagaactaatgaaaata 20170566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 94 - 190
Target Start/End: Complemental strand, 24684972 - 24684876
Alignment:
Q  94 ataagcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataa 190  Q
    |||||||||| |||||||||||  |||||||| |||||||| ||||| ||||||||   | |||| |||||||||||||||||| ||| ||||||||    
T  24684972 ataagcgcttttgcataagtttacataagctatttttatagaaaaagataaaataaattttaattgtttttgtatatgctataagttgcttttataa 24684876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 216
Target Start/End: Original strand, 20880397 - 20880519
Alignment:
Q  93 aataagcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaa 192  Q
    |||||| ||||||| ||||| ||  |||||||| |||||||| ||| | ||||| || | | |||| ||||||||||||||||||  |||||||| ||      
T  20880397 aataagtgcttatgtataagcttacataagctatttttatagcaaatgataaaacaa-gttaaattgtttttgtatatgctataaactgtttttaaaagc 20880495  T
Q  193 tatattggagaactaatgaaaata 216  Q
    |||||||||||||| |||||||||    
T  20880496 tatattggagaacttatgaaaata 20880519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 30443881 - 30443936
Alignment:
Q  161 ttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaata 216  Q
    |||||||||||||||||  |||||||||||| |||||||||||||| |||||||||    
T  30443881 ttttgtatatgctataagctgtttttataaactatattggagaacttatgaaaata 30443936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 216
Target Start/End: Original strand, 39980650 - 39980772
Alignment:
Q  94 ataagcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaat 193  Q
    |||||| |||||| ||||||||| || ||||  |||||||| | ||  || ||||| | | |||| |||||| | ||||||||| ||||||||||||  |    
T  39980650 ataagcacttatgtataagtttgcattagctttttttatagcagaacatacaataacgttaaattgtttttgaacatgctataagttgtttttataagct 39980749  T
Q  194 atattggagaactaatgaaaata 216  Q
    ||||||||||||| |||||||||    
T  39980750 atattggagaacttatgaaaata 39980772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 119 - 216
Target Start/End: Complemental strand, 36631175 - 36631078
Alignment:
Q  119 taagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaata 216  Q
    ||||||| || ||||||||| | |||| ||| | | |||| |||||||| ||||||||| |||||||||| |  |||||||||||||| |||||||||    
T  36631175 taagctatttctatagtaaaggataaagtaaagttaaattgtttttgtacatgctataagttgtttttatgagctatattggagaacttatgaaaata 36631078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 36189529 - 36189609
Alignment:
Q  136 aaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaata 216  Q
    ||||| |||||||| | | |||| |||||||||||| |||||  | ||||||||| ||||||||||||||| |||||||||    
T  36189529 aaaagataaaataaagttaaattgtttttgtatatgatataagctatttttataagatatattggagaacttatgaaaata 36189609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 101 - 221
Target Start/End: Original strand, 4400974 - 4401092
Alignment:
Q  101 cttatgcataagtttgtataagctactttt-atagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattg 199  Q
    |||||| ||||||||| |||||||  |||| |||  ||||||| |||||| | | ||||||||| ||||||||||||| ||||||   |||  |||||||    
T  4400974 cttatgtataagtttgcataagcttttttttataccaaaaggtgaaataacgttaaattattttcgtatatgctataagttgttt---taagttatattg 4401070  T
Q  200 gagaactaatgaaaatatgtta 221  Q
    ||||||| ||||||||| ||||    
T  4401071 gagaacttatgaaaataagtta 4401092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 213
Target Start/End: Complemental strand, 18405979 - 18405861
Alignment:
Q  96 aagcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattattttt-gtatatgctataacttgtttttataaaata 194  Q
    ||||||||||| ||||| ||  ||||| || || ||||| ||||| |||||||  | |||||| ||||| ||||||||||||| ||||||| ||||  ||    
T  18405979 aagcgcttatgtataagcttacataagttatttatataggaaaagataaaatatcgttgaatttttttttgtatatgctataagttgttttcataagcta 18405880  T
Q  195 tattggagaactaatgaaa 213  Q
    | |||||||||| ||||||    
T  18405879 tcttggagaacttatgaaa 18405861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 10704712 - 10704639
Alignment:
Q  104 atgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataa 177  Q
    ||||||||| ||  ||||||||||||||||| ||||| |||||| ||| | |||| ||||||||| ||||||||    
T  10704712 atgcataagcttacataagctacttttatagcaaaagataaaatgatgttaaattgtttttgtatttgctataa 10704639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 47132313 - 47132374
Alignment:
Q  155 aattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaata 216  Q
    |||| |||||||||||||||||  ||||||||||||  |||||||||||| | |||||||||    
T  47132313 aattgtttttgtatatgctataggttgtttttataagctatattggagaagttatgaaaata 47132374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 901907 - 901967
Alignment:
Q  156 attatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaata 216  Q
    ||||||||| |||||| ||||  ||||||||||||  |||||||||||||| |||||||||    
T  901907 attatttttatatatgttatactttgtttttataagctatattggagaacttatgaaaata 901967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 206
Target Start/End: Complemental strand, 30956767 - 30956663
Alignment:
Q  102 ttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattgga 201  Q
    ||||||||||| ||  |||||||| || ||||| ||||| |||||||| | | |||| |||||||||| ||||||| ||||||| | ||  ||| |||||    
T  30956767 ttatgcataagcttacataagctatttctatagcaaaagataaaataaagttaaattgtttttgtataggctataagttgttttcaaaagctatcttgga 30956668  T
Q  202 gaact 206  Q
    |||||    
T  30956667 gaact 30956663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 206
Target Start/End: Complemental strand, 30972579 - 30972475
Alignment:
Q  102 ttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattgga 201  Q
    ||||||||||| ||  |||||||| || ||||| ||||| |||||||| | | |||| |||||||||| ||||||| ||||||| | ||  ||| |||||    
T  30972579 ttatgcataagcttacataagctatttctatagcaaaagataaaataaagttaaattgtttttgtataggctataagttgttttcaaaagctatcttgga 30972480  T
Q  202 gaact 206  Q
    |||||    
T  30972479 gaact 30972475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 49034379 - 49034291
Alignment:
Q  127 ttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaat 215  Q
    |||||||| ||||| |||||||  | | |||| ||| || ||||||||||| ||||||||||||  ||||||||||||||  |||||||    
T  49034379 ttttatagcaaaagataaaataccgttaaattgtttgtgcatatgctataagttgtttttataagctatattggagaacttctgaaaat 49034291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 35959581 - 35959495
Alignment:
Q  118 ataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattggagaa 204  Q
    |||||||| || ||||| ||| | |||||||| | | ||||||||||||||||||| ||| |||||| |||||  |||||| |||||    
T  35959581 ataagctatttctatagaaaaggataaaataaagttaaattatttttgtatatgctgtaagttgtttctataagctatattagagaa 35959495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 115 - 213
Target Start/End: Complemental strand, 44061151 - 44061053
Alignment:
Q  115 tgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaa 213  Q
    ||||||||||| || ||||| ||||| |||||||| | | |||| ||||| |||| ||||||| ||||||| |||  |||| || ||||||| ||||||    
T  44061151 tgtataagctatttctatagcaaaagataaaataaggttaaattgtttttctataagctataagttgttttcatatgatatcttagagaacttatgaaa 44061053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 12862330 - 12862285
Alignment:
Q  161 ttttgtatatgctataacttgtttttataaaatatattggagaact 206  Q
    ||||||||||||||||| ||||||| ||||  ||||||||||||||    
T  12862330 ttttgtatatgctataagttgttttcataagctatattggagaact 12862285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 216
Target Start/End: Original strand, 21335597 - 21335718
Alignment:
Q  96 aagcgcttat-gcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaata 194  Q
    |||||||||| ||||||| ||  |||||||| |||||||| ||||| |||||||| | | | || ||||||||||| || |||  |||||| ||||  ||    
T  21335597 aagcgcttatagcataagcttaaataagctaattttatagaaaaagataaaataaagtttagttgtttttgtatattctgtaagctgttttcataagcta 21335696  T
Q  195 tattggagaactaatgaaaata 216  Q
    || | ||||||| |||||||||    
T  21335697 tactagagaacttatgaaaata 21335718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 33231710 - 33231770
Alignment:
Q  155 aattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaata 216  Q
    ||||||||||||||||| || || |||||||| |||  ||| ||||||||||||||||||||    
T  33231710 aattatttttgtatatggta-aagttgtttttgtaatctatcttggagaactaatgaaaata 33231770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 47587455 - 47587496
Alignment:
Q  160 tttttgtatatgctataacttgtttttataaaatatattgga 201  Q
    |||||||||||| ||||| ||||||||||||| |||||||||    
T  47587455 tttttgtatatgttataagttgtttttataaactatattgga 47587496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 96 - 190
Target Start/End: Original strand, 6521028 - 6521121
Alignment:
Q  96 aagcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataa 190  Q
    ||||||||||||||||| ||  |||| |||||||||||| |||| || |||||| ||| ||||||||||||||||||| |||  |||||||||||    
T  6521028 aagcgcttatgcataagctttcataaactacttttatag-aaaatgttaaataaagataaattatttttgtatatgctgtaagctgtttttataa 6521121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 127 - 243
Target Start/End: Original strand, 32009646 - 32009762
Alignment:
Q  127 ttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaatatgttagaaaa 226  Q
    |||||||| ||||  |||||| | | |||||| || ||||||||||||||| ||||||||||||  |||||||||||||| ||||||| | |||  ||||    
T  32009646 ttttatagaaaaacataaaatgaagttgaattgttcttgtatatgctataaattgtttttataagctatattggagaacttatgaaaacaagttcaaaaa 32009745  T
Q  227 atatttataaaaattgt 243  Q
    |  ||||| ||||||||    
T  32009746 agctttatgaaaattgt 32009762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 216
Target Start/End: Complemental strand, 16458127 - 16458006
Alignment:
Q  94 ataagcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaat 193  Q
    ||||| ||||||  ||||| ||| |||||||| |||||||| ||||| ||||||||   | |||| |||||||||||||||||| |||||||||| |  |    
T  16458127 ataagtgcttatatataagcttgcataagctatttttatagcaaaagataaaataact-taaattgtttttgtatatgctataagttgtttttatgagct 16458029  T
Q  194 atattggagaactaatgaaaata 216  Q
    | |||||||||||  ||||||||    
T  16458028 aaattggagaacttgtgaaaata 16458006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 135 - 216
Target Start/End: Complemental strand, 16937991 - 16937910
Alignment:
Q  135 taaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaata 216  Q
    |||||| |||||||| | | |||| |||||||||||||||||| |||||||||||   |||||||||||||| | |||||||    
T  16937991 taaaagataaaataacgttaaattgtttttgtatatgctataagttgtttttatacgctatattggagaacttaggaaaata 16937910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 136 - 265
Target Start/End: Complemental strand, 34102421 - 34102292
Alignment:
Q  136 aaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaatatgttagaaaaatatttata 235  Q
    ||||| |||||||||| | | || |||||||||||||||||| ||||||||||||   || |||||||||| ||||||| | || |  |||| | ||||     
T  34102421 aaaagataaaataatgttaatttgtttttgtatatgctataagttgtttttataagccatgttggagaactcatgaaaacaagtcaataaaaaagttatg 34102322  T
Q  236 aaaattgttataaggtattttcaaaaattc 265  Q
    ||||||||  |||| |||||||| ||||||    
T  34102321 aaaattgtcttaagctattttcataaattc 34102292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 93 - 216
Target Start/End: Original strand, 29925761 - 29925884
Alignment:
Q  93 aataagcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaa 192  Q
    ||||| |||||| | ||| | ||| |||||||| |||||||| ||||| |||||||  | | |||| ||| ||||| |||||||| ||||||  ||||      
T  29925761 aataaacgcttaagtatatgcttgcataagctatttttatagcaaaagataaaatagcgttaaattgtttctgtatgtgctataagttgtttacataagc 29925860  T
Q  193 tatattggagaactaatgaaaata 216  Q
    |||||||||||||| |||||||||    
T  29925861 tatattggagaacttatgaaaata 29925884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 227
Target Start/End: Original strand, 10639874 - 10640007
Alignment:
Q  94 ataagcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaat 193  Q
    |||||| |||||| |||||| | ||||||||| || ||||| ||||| |||||| |   | |||| ||||||||||||  || | ||||||  ||||| |    
T  10639874 ataagcacttatgtataagtctatataagctatttctatagcaaaagataaaattaaattaaattgtttttgtatatgtgatgagttgtttacataaact 10639973  T
Q  194 atattggagaactaatgaaaatatgttagaaaaa 227  Q
    || |||||||||| ||||||||| | ||||||||    
T  10639974 attttggagaacttatgaaaataagctagaaaaa 10640007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 27298061 - 27298106
Alignment:
Q  161 ttttgtatatgctataacttgtttttataaaatatattggagaact 206  Q
    |||| |||||||||||| |||||||||||| |||||||||||||||    
T  27298061 ttttttatatgctataagttgtttttataagatatattggagaact 27298106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 94 - 216
Target Start/End: Original strand, 25461013 - 25461134
Alignment:
Q  94 ataagcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaat 193  Q
    ||||| ||||||  ||||| |||  ||||||| |||| ||| ||||| |||| ||| | || ||| |||||||||||| ||||| ||||||| ||||  |    
T  25461013 ataagagcttatatataagcttgcgtaagctatttttctagcaaaagataaa-taaagttgtattgtttttgtatatgttataagttgttttcataagct 25461111  T
Q  194 atattggagaactaatgaaaata 216  Q
     |||||||||||| |||||||||    
T  25461112 ctattggagaactgatgaaaata 25461134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 151
Target Start/End: Original strand, 7999127 - 7999184
Alignment:
Q  94 ataagcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatg 151  Q
    ||||||||||||| ||||| ||| ||||| || |||||| | ||||||||||||||||    
T  7999127 ataagcgcttatgtataagcttgcataagttatttttatggcaaaaggtaaaataatg 7999184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 216
Target Start/End: Original strand, 12425513 - 12425614
Alignment:
Q  115 tgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaa 214  Q
    ||||||| ||| || ||||||||||| |||||||| | | |||| |||| ||||| |||||||  |||||| | ||  ||| |||||||||| |||||||    
T  12425513 tgtataaactatttatatagtaaaagataaaataaagttaaattgttttcgtataagctataagctgttttcacaagctatcttggagaacttatgaaaa 12425612  T
Q  215 ta 216  Q
    ||    
T  12425613 ta 12425614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 12554501 - 12554545
Alignment:
Q  155 aattatttttgtatatgctataacttgtttttataaaatatattg 199  Q
    |||| |||||||||||||||||| ||||||||||||  |||||||    
T  12554501 aattgtttttgtatatgctataagttgtttttataacctatattg 12554545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 43300865 - 43300921
Alignment:
Q  160 tttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaata 216  Q
    ||||||||||| |||||| |||||||| |||  ||| |||||||||| |||||||||    
T  43300865 tttttgtatatcctataagttgtttttgtaagctatcttggagaacttatgaaaata 43300921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 190
Target Start/End: Original strand, 38750279 - 38750375
Alignment:
Q  94 ataagcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataa 190  Q
    ||||||||||||| ||||| ||| |||||||| ||||||||  | ||  ||||||||| | || | |||||||||||| ||||| ||||||||||||    
T  38750279 ataagcgcttatgtataagcttgcataagctatttttataggcagagaaaaaataatgttaaaatgtttttgtatatgatataagttgtttttataa 38750375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 11861791 - 11861858
Alignment:
Q  160 tttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaatatgttagaaaaa 227  Q
    |||||||||||||||||| ||||||||||||  |||| | ||||||| ||||||||| |||| |||||    
T  11861791 tttttgtatatgctataagttgtttttataagctataatagagaacttatgaaaatacgttaaaaaaa 11861858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 94 - 213
Target Start/End: Original strand, 12976134 - 12976253
Alignment:
Q  94 ataagcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaat 193  Q
    ||||||||||||| ||||| |   |||||||| || ||||| ||||  |||||||| | | ||||| |||| ||||||||| || ||||||||||||  |    
T  12976134 ataagcgcttatgtataagctcacataagctatttctatagcaaaatataaaataaagttaaattaattttttatatgctacaatttgtttttataagct 12976233  T
Q  194 atattggagaactaatgaaa 213  Q
    ||||| ||||||| ||||||    
T  12976234 atattagagaacttatgaaa 12976253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 96 - 267
Target Start/End: Complemental strand, 16825684 - 16825515
Alignment:
Q  96 aagcgcttatgcataagtttgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatat 195  Q
    ||||||||||| ||||  ||| |||||||| | |||||||||| | |||||||||| | |||| ||||||| || | ||||| |||||| || ||  |||    
T  16825684 aagcgcttatgtataaccttgcataagctattcttatagtaaaggataaaataatgttaaattgtttttgtttacgttataagttgtttctacaagctat 16825585  T
Q  196 attggagaactaatgaaaatatgttagaaaaatatttataaaaattgttataaggtattttcaaaaattctc 267  Q
    ||||  ||||| ||||||||| ||| ||||||   |||| |||||||| ||||| |||||||| || |||||    
T  16825584 attgccgaacttatgaaaataagtt-gaaaaa-gcttatgaaaattgtcataagctattttcataagttctc 16825515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 216
Target Start/End: Original strand, 26771210 - 26771308
Alignment:
Q  118 ataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaata 216  Q
    |||||||| || |||||||||   ||||||||   | |||| ||||||||||||||||||  | ||||||||| ||||||| ||||||| |||||||||    
T  26771210 ataagctatttctatagtaaagcataaaataaacttaaattgtttttgtatatgctataagctttttttataagatatattagagaacttatgaaaata 26771308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 18133644 - 18133699
Alignment:
Q  161 ttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaata 216  Q
    |||||||||| ||||||  || ||||||||| |||||||||||||| |||||||||    
T  18133644 ttttgtatatcctataagctggttttataaactatattggagaacttatgaaaata 18133699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 278
Target Start/End: Original strand, 37945579 - 37945700
Alignment:
Q  155 aattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaatatgttagaaaaatatttataaaaattgttataaggtatt 254  Q
    ||||| ||||||||||||||| | ||||||||||||  ||||||| | ||||  |||||||| |||| ||||||  ||||  ||||||| ||||| | ||    
T  37945579 aattaattttgtatatgctat-agttgtttttataagctatattgtacaacttctgaaaataagtta-aaaaatgcttatggaaattgtcataagctgtt 37945676  T
Q  255 ttcaaaaattctcacaaaacttat 278  Q
    |||| || ||||| ||||||||||    
T  37945677 ttcagaagttctcccaaaacttat 37945700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 216
Target Start/End: Original strand, 10114432 - 10114532
Alignment:
Q  115 tgtataagctacttttatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaa 214  Q
    ||||||||||| || ||||| ||||| |||||||| | |||||| |||| ||||| |||||||  |||||| || |  |||||||||||||  |||||||    
T  10114432 tgtataagctatttctatagcaaaagataaaataa-gttgaattgttttggtataagctataagctgttttcattagctatattggagaacatatgaaaa 10114530  T
Q  215 ta 216  Q
    ||    
T  10114531 ta 10114532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 15180523 - 15180584
Alignment:
Q  155 aattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaata 216  Q
    ||||||||||||| ||| ||||| |||||| |||||  ||||||||||||||  ||||||||    
T  15180523 aattatttttgtaaatgttataagttgtttctataagctatattggagaacttctgaaaata 15180584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 130 - 226
Target Start/End: Original strand, 29205765 - 29205861
Alignment:
Q  130 tatagtaaaaggtaaaataatgatgaattatttttgtatatgctataacttgtttttataaaatatattggagaactaatgaaaatatgttagaaaa 226  Q
    ||||| ||||| |||||| | | | |||| |||||||||||||||||| || |||| ||||| ||| |||||||| | |||||| || |||| ||||    
T  29205765 tatagaaaaagataaaatgaagttaaattgtttttgtatatgctataagttattttcataaactattttggagaatttatgaaagtaggttaaaaaa 29205861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University