View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2126_low_10 (Length: 384)
Name: NF2126_low_10
Description: NF2126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2126_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 47 - 377
Target Start/End: Original strand, 39789298 - 39789628
Alignment:
| Q |
47 |
tcacgccagctaataattccattttgttttatgaatcttctacattttcaagttgagaacccgtgttgatatgcatatatcttataaaagacaaattctt |
146 |
Q |
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| T |
39789298 |
tcacgccagctaataattccattttgttttatgagtcttctacattttcaagttgagaacccgtgttgatatgcatatatcttataaaagataaattctt |
39789397 |
T |
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| Q |
147 |
cttcttcactaagaaccaggaaaaggaagaagaatttttgtctcattacaagttacatcattatcaacttcttctaaaaactaatttatctcaatattct |
246 |
Q |
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| T |
39789398 |
cttcttcactaagaaccaggaaaaggaagaagaatttttgtctcattacaggttacatcattatcaacttcttctaaaaactaatttatctcaatattct |
39789497 |
T |
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| Q |
247 |
aactagaagacacaaggctttctttttcaatacttccaattttatcaccttcttacacgtcttttgccaccatatttcgatcaaaatgctcgccagttgt |
346 |
Q |
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| T |
39789498 |
aactagaagacacaaggctttctttttcaatacttccaattttatcaccttcttacacgtcttttgccaccatatttcgatcaaaatgctcgccagttgt |
39789597 |
T |
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| Q |
347 |
atctgaataatcattcttcggagaattatct |
377 |
Q |
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| T |
39789598 |
atctgaataatcattcttcggagaaatatct |
39789628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 99 - 161
Target Start/End: Complemental strand, 2481561 - 2481499
Alignment:
| Q |
99 |
ttgagaacccgtgttgatatgcatatatcttataaaagacaaattcttcttcttcactaagaa |
161 |
Q |
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| T |
2481561 |
ttgagaacccttgttgataagcatatctcttataaaagacataggcttcttcttcactaagaa |
2481499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 99 - 161
Target Start/End: Original strand, 12632556 - 12632618
Alignment:
| Q |
99 |
ttgagaacccgtgttgatatgcatatatcttataaaagacaaattcttcttcttcactaagaa |
161 |
Q |
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| T |
12632556 |
ttgagaacccttgttgataagcatatctcttataaaagacataggcttcttcttcactaagaa |
12632618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 99 - 161
Target Start/End: Original strand, 27108263 - 27108325
Alignment:
| Q |
99 |
ttgagaacccgtgttgatatgcatatatcttataaaagacaaattcttcttcttcactaagaa |
161 |
Q |
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| T |
27108263 |
ttgagaacccttgttgataagcatatctcttataaaagacataggcttcttcttcactaagaa |
27108325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 99 - 161
Target Start/End: Original strand, 23272118 - 23272180
Alignment:
| Q |
99 |
ttgagaacccgtgttgatatgcatatatcttataaaagacaaattcttcttcttcactaagaa |
161 |
Q |
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| T |
23272118 |
ttgagaacccttgttgataagcatatctcttataaaagacataagcttcttcttcactaagaa |
23272180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 99 - 161
Target Start/End: Original strand, 44680876 - 44680938
Alignment:
| Q |
99 |
ttgagaacccgtgttgatatgcatatatcttataaaagacaaattcttcttcttcactaagaa |
161 |
Q |
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| T |
44680876 |
ttgagaacccttgttgataagcatatctcttataaaagacataggcttcttcttcactaagaa |
44680938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 4709064 - 4709112
Alignment:
| Q |
113 |
tgatatgcatatatcttataaaagacaaattcttcttcttcactaagaa |
161 |
Q |
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| T |
4709064 |
tgataagcatatctcttataaaagacatatccttcttcttcactaagaa |
4709112 |
T |
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