View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2126_low_14 (Length: 333)
Name: NF2126_low_14
Description: NF2126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2126_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 13 - 315
Target Start/End: Complemental strand, 6010971 - 6010669
Alignment:
| Q |
13 |
aatatccccatcaggtccaatcaacccaacattagaagaagatccaattctctctttagtctcatcatcaatagacaaaacaataggaagtgacatatta |
112 |
Q |
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| T |
6010971 |
aatatccccatcaggtccaatcaacccaacattagaagaagatccaattctctctttagtctcatcatcaatagacaaaacaataggaagtgacatatta |
6010872 |
T |
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| Q |
113 |
acaaaagaaccatcattcaacctaagtgaattaaaatgcaaactttgaagatattcattttccctcatgaaacctttcaaaggactagcccaaccttcac |
212 |
Q |
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| T |
6010871 |
acaaaagaaccatcattcaacctaagtgaattaaaatgcaaactttgaagatattcattttccctcatgaaacctttcaaaggactagcccaaccttcac |
6010772 |
T |
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| Q |
213 |
caatcacatgcacccattcataatcaacttttgttagtttcacattaggaagtgacttagcttcaagtaccttggactctctttcattttcaggcaccat |
312 |
Q |
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| T |
6010771 |
caattacatgcacccattcataatcaacttttgttagtttcacattaggaagtgacttagcttcaagtaccttggactctctttcattttcaggcaccat |
6010672 |
T |
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| Q |
313 |
aag |
315 |
Q |
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| T |
6010671 |
aag |
6010669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 46333169 - 46333245
Alignment:
| Q |
74 |
tcatcatcaatagacaaaacaataggaagtgacatattaacaaaagaaccatcattcaacctaagtgaattaaaatg |
150 |
Q |
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||||||||||||| |||||||||||||| |||||||| |||||||| |||||||| | ||||||||||| ||||| |
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| T |
46333169 |
tcatcatcaatagccaaaacaataggaacagacatattcacaaaagacccatcattgagtctaagtgaattgaaatg |
46333245 |
T |
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