View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2126_low_17 (Length: 311)
Name: NF2126_low_17
Description: NF2126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2126_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 8878871 - 8878564
Alignment:
| Q |
1 |
tgtagatgtacataatttgtttatatattagggttggaccaatgtatttgtaggcttaaaatttggtttacattactgcatgcaattgtcattgatgtt- |
99 |
Q |
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| T |
8878871 |
tgtagaggtacataatttttttataaattagggtcggtccaatgtatttgtaggcttaaaatttggtttacattactgcatgcaattgtcattgatgttc |
8878772 |
T |
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| Q |
100 |
----------taagtggaacagtccaaaaagggattaaaagcgttacgcgtatcatgtgaaggaacaagctatgcatataaaaaagcaggtaaaccattt |
189 |
Q |
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| T |
8878771 |
cataacgtggtaagtggaacagtccaaaaagggattaaaagcgt-------agcatgtgaaggaacaagctatgcatataaaaaagcaggtaaaccattt |
8878679 |
T |
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| Q |
190 |
ttggttcaggttcagcat--tcaaagcaagagtggctaaggtttcgtgtaggacataaaccattctcactcccagaaacttacagtattatatggaccca |
287 |
Q |
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| T |
8878678 |
ttggttcaggttcagcatattcaaagcaagagtggctaaggtttcgtgtaggacataaaccattctcactcccagaaacttacagtattatatggaccca |
8878579 |
T |
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| Q |
288 |
atttaacaccatatt |
302 |
Q |
| |
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||||||||||||||| |
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| T |
8878578 |
atttaacaccatatt |
8878564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 221 - 302
Target Start/End: Original strand, 8863156 - 8863235
Alignment:
| Q |
221 |
ggctaaggtttcgtgtaggacataaaccattctcactcccagaaacttacagtattatatggacccaatttaacaccatatt |
302 |
Q |
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| T |
8863156 |
ggctaaggtgttgtgtaggacacaaaccattccccc--ccggaaatttacagtattatatggacacaatttaacaccatatt |
8863235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 100 - 186
Target Start/End: Original strand, 8862894 - 8862973
Alignment:
| Q |
100 |
taagtggaacagtccaaaaagggattaaaagcgttacgcgtatcatgtgaaggaacaagctatgcatataaaaaagcaggtaaacca |
186 |
Q |
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||||||||||||||||||||||| |||||||||| | |||||||||||||||| |||||||| ||||||||| ||||||| |
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| T |
8862894 |
taagtggaacagtccaaaaagggcttaaaagcgtggc-------atgtgaaggaacaagccatgcatatcaaaaagcagataaacca |
8862973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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