View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2126_low_18 (Length: 300)
Name: NF2126_low_18
Description: NF2126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2126_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 10027691 - 10027849
Alignment:
| Q |
1 |
aatctggtatattacacttatgtaatttgattgaaattgcattgacgtcagatctacattgatgacagctaggacatttgctctccaagaattttcataa |
100 |
Q |
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| T |
10027691 |
aatctggtatattacacttatgtaatttgattgaaattgcattgacgtcagatctacattgatgacagctaggacatttgctctccaagaattttcataa |
10027790 |
T |
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| Q |
101 |
cgttgttcaatagtgtaatagtattcaagtattacaccattgtaagttgatcgctccta |
159 |
Q |
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| T |
10027791 |
cgttgttcaacagtgtaatagtattcaagtattacaccattgtaagttgatcgctccta |
10027849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 10047544 - 10047702
Alignment:
| Q |
1 |
aatctggtatattacacttatgtaatttgattgaaattgcattgacgtcagatctacattgatgacagctaggacatttgctctccaagaattttcataa |
100 |
Q |
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| T |
10047544 |
aatctggtatattacacttatgtaatttgattgaaattgcattgacgtcagatctacattgatgacagctaggacatttgctctccaagaattttcataa |
10047643 |
T |
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| Q |
101 |
cgttgttcaatagtgtaatagtattcaagtattacaccattgtaagttgatcgctccta |
159 |
Q |
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| T |
10047644 |
cgttgttcaacagtgtaatagtattcaagtattacaccattgtaagttgatcgctccta |
10047702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 10027910 - 10027965
Alignment:
| Q |
220 |
gtactaattcatgataaaataatttcagcgtagaaatgagatatagctgtgttatg |
275 |
Q |
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| T |
10027910 |
gtactaattcatgatcaaataatttcagcgtagaaatgagatatagctgtgttatg |
10027965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 10047763 - 10047818
Alignment:
| Q |
220 |
gtactaattcatgataaaataatttcagcgtagaaatgagatatagctgtgttatg |
275 |
Q |
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| T |
10047763 |
gtactaattcatgatcaaataatttcagcgtagaaatgagatatagctgtgttatg |
10047818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 85
Target Start/End: Original strand, 10061387 - 10061426
Alignment:
| Q |
46 |
cgtcagatctacattgatgacagctaggacatttgctctc |
85 |
Q |
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| T |
10061387 |
cgtcagatctacattgatgacatcgaggacatttgctctc |
10061426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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